Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:87497839-88567863

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm34180 4 87530893 to 87668521 137628 - lncRNA gene predicted gene, 34180
Gm12604 4 87580780 to 87581308 528 + pseudogene predicted gene 12604
Tssr37761 4 87718445 to 87718451 6 + TSS region transcription start site region 37761
Mllt3 4 87769925 to 88033364 263439 - protein coding gene myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3
D4Mit349 4 87792890 to 87792964 74 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 349
4832441B07Rik 4 87797091 to 87798689 1598 unclassified gene RIKEN cDNA 4832441B07 gene
D4Dcr10 4 87803407 to 87803508 101 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 10
Tssr42360 4 87806263 to 87806274 11 - TSS region transcription start site region 42360
Tssr42361 4 87806276 to 87806292 16 - TSS region transcription start site region 42361
Tssr42362 4 87806296 to 87806325 29 - TSS region transcription start site region 42362
Tssr42363 4 87806332 to 87806345 13 - TSS region transcription start site region 42363
Tssr1226 4 87806346 to 87806353 7 - TSS region transcription start site region 1226
Tssr42364 4 87829519 to 87829524 5 - TSS region transcription start site region 42364
Tssr42365 4 87881737 to 87881762 25 - TSS region transcription start site region 42365
Tssr42366 4 87944663 to 87944667 4 - TSS region transcription start site region 42366
Gm34232 4 87974620 to 87985631 11011 - lncRNA gene predicted gene, 34232
Tssr42367 4 87983282 to 87983306 24 - TSS region transcription start site region 42367
Tssr42368 4 87986262 to 87986266 4 - TSS region transcription start site region 42368
Tssr42369 4 88001710 to 88001732 22 - TSS region transcription start site region 42369
Tssr42370 4 88019527 to 88019531 4 - TSS region transcription start site region 42370
Cpgi14428 4 88031239 to 88033791 2552 CpG island CpG island 14428
Tssr42371 4 88031700 to 88031732 32 - TSS region transcription start site region 42371
Tssr42372 4 88032735 to 88032749 14 - TSS region transcription start site region 42372
Tssr42373 4 88032769 to 88032802 33 - TSS region transcription start site region 42373
Tssr42374 4 88032805 to 88032822 17 - TSS region transcription start site region 42374
Tssr42375 4 88032839 to 88032863 24 - TSS region transcription start site region 42375
Tssr42376 4 88033277 to 88033288 11 - TSS region transcription start site region 42376
Tssr42377 4 88033289 to 88033315 26 - TSS region transcription start site region 42377
Tssr42378 4 88033328 to 88033373 45 - TSS region transcription start site region 42378
Gm12631 4 88033501 to 88034998 1497 + antisense lncRNA gene predicted gene 12631
Gm12646 4 88043804 to 88044041 237 + pseudogene predicted gene 12646
Cpgi14429 4 88094356 to 88095263 907 CpG island CpG island 14429
Tssr37762 4 88094599 to 88094653 54 + TSS region transcription start site region 37762
Focad 4 88094630 to 88411011 316381 + protein coding gene focadhesin
Tssr37763 4 88094660 to 88094672 12 + TSS region transcription start site region 37763
Mir491 4 88122040 to 88122125 85 + miRNA gene microRNA 491
Tssr37764 4 88124432 to 88124441 9 + TSS region transcription start site region 37764
Gm12645 4 88151696 to 88151970 274 + pseudogene predicted gene 12645
Tssr37765 4 88157693 to 88157698 5 + TSS region transcription start site region 37765
Tssr1227 4 88165553 to 88165559 6 + TSS region transcription start site region 1227
Tssr37766 4 88179553 to 88179568 15 + TSS region transcription start site region 37766
Tssr37767 4 88209782 to 88209822 40 + TSS region transcription start site region 37767
Tssr37768 4 88353856 to 88353867 11 + TSS region transcription start site region 37768
Tssr37769 4 88353888 to 88353899 11 + TSS region transcription start site region 37769
Tssr37770 4 88353900 to 88353913 13 + TSS region transcription start site region 37770
Hacd4 4 88407687 to 88438936 31249 - protein coding gene 3-hydroxyacyl-CoA dehydratase 4
Tssr42379 4 88416087 to 88416100 13 - TSS region transcription start site region 42379
Tssr42380 4 88418264 to 88418281 17 - TSS region transcription start site region 42380
Tssr42381 4 88419000 to 88419013 13 - TSS region transcription start site region 42381
Tssr42382 4 88428081 to 88428085 4 - TSS region transcription start site region 42382
Tssr42383 4 88429001 to 88429007 6 - TSS region transcription start site region 42383
Gdap6 4 88431729 to 88432926 1197 unclassified gene ganglioside-induced differentiation-associated-protein 6
Tssr42384 4 88438127 to 88438131 4 - TSS region transcription start site region 42384
Tssr42385 4 88438885 to 88438894 9 - TSS region transcription start site region 42385
Tssr42386 4 88438900 to 88438933 33 - TSS region transcription start site region 42386
Ifnb1 4 88522025 to 88522774 749 - protein coding gene interferon beta 1, fibroblast
Tssr42387 4 88522842 to 88522847 5 - TSS region transcription start site region 42387
Ifna15 4 88557673 to 88558245 572 - protein coding gene interferon alpha 15