Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:8740003-9680108

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Whl 4 8426721 to 9574055 1147334 heritable phenotypic marker wheels
Chd7 4 8690406 to 8867659 177253 + protein coding gene chromodomain helicase DNA binding protein 7
Cpgi14009 4 8751730 to 8752288 558 CpG island CpG island 14009
Tssr36422 4 8752330 to 8752351 21 + TSS region transcription start site region 36422
Tssr36423 4 8785543 to 8785550 7 + TSS region transcription start site region 36423
Tssr36424 4 8785651 to 8785688 37 + TSS region transcription start site region 36424
Tssr36425 4 8800212 to 8800237 25 + TSS region transcription start site region 36425
Tssr36426 4 8803427 to 8803441 14 + TSS region transcription start site region 36426
Tssr36427 4 8806245 to 8806252 7 + TSS region transcription start site region 36427
Tssr36428 4 8811279 to 8811290 11 + TSS region transcription start site region 36428
Tssr36429 4 8811323 to 8811339 16 + TSS region transcription start site region 36429
Tssr36430 4 8811341 to 8811342 1 + TSS region transcription start site region 36430
Tssr36431 4 8811346 to 8811357 11 + TSS region transcription start site region 36431
Tssr36432 4 8811363 to 8811377 14 + TSS region transcription start site region 36432
Tssr36433 4 8811421 to 8811440 19 + TSS region transcription start site region 36433
Tssr36434 4 8821771 to 8821780 9 + TSS region transcription start site region 36434
Tssr36435 4 8821783 to 8821802 19 + TSS region transcription start site region 36435
Tssr1116 4 8822135 to 8822139 4 + TSS region transcription start site region 1116
Tssr40890 4 8822627 to 8822634 7 - TSS region transcription start site region 40890
Tssr36436 4 8822782 to 8822804 22 + TSS region transcription start site region 36436
Tssr36437 4 8822809 to 8822818 9 + TSS region transcription start site region 36437
Tssr40891 4 8823241 to 8823251 10 - TSS region transcription start site region 40891
Tssr36438 4 8837710 to 8837722 12 + TSS region transcription start site region 36438
Tssr36439 4 8837728 to 8837754 26 + TSS region transcription start site region 36439
Tssr36440 4 8837825 to 8837836 11 + TSS region transcription start site region 36440
Tssr36441 4 8838989 to 8839003 14 + TSS region transcription start site region 36441
Tssr36442 4 8840334 to 8840347 13 + TSS region transcription start site region 36442
Tssr36443 4 8840365 to 8840391 26 + TSS region transcription start site region 36443
Tssr36444 4 8840483 to 8840493 10 + TSS region transcription start site region 36444
Tssr36445 4 8842377 to 8842381 4 + TSS region transcription start site region 36445
Tssr36446 4 8842711 to 8842714 3 + TSS region transcription start site region 36446
Tssr1117 4 8843035 to 8843038 3 + TSS region transcription start site region 1117
Tssr36447 4 8854198 to 8854204 6 + TSS region transcription start site region 36447
Cpgi14010 4 8865760 to 8866532 772 CpG island CpG island 14010
Gm46842 4 8901941 to 8910658 8717 - lncRNA gene predicted gene, 46842
D4Mit360 4 8905620 to 8905732 112 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology-360
Cpgi14011 4 8911114 to 8911939 825 CpG island CpG island 14011
Tssr40892 4 8912860 to 8912892 32 - TSS region transcription start site region 40892
Tssr36448 4 8913007 to 8913018 11 + TSS region transcription start site region 36448
Tssr36449 4 8913019 to 8913029 10 + TSS region transcription start site region 36449
Tssr40893 4 8913686 to 8913689 3 - TSS region transcription start site region 40893
Tssr36450 4 8913812 to 8913846 34 + TSS region transcription start site region 36450
Tssr36451 4 8915755 to 8915791 36 + TSS region transcription start site region 36451
Cpgi14012 4 8922079 to 8922361 282 CpG island CpG island 14012
Tssr40894 4 8926733 to 8926758 25 - TSS region transcription start site region 40894
Tssr1118 4 8939228 to 8939239 11 + TSS region transcription start site region 1118
Tssr36452 4 8939749 to 8939768 19 + TSS region transcription start site region 36452
Rps18-ps2 4 8941259 to 8941656 397 + pseudogene ribosomal protein S18, pseudogene 2
Tssr40895 4 8980268 to 8980270 2 - TSS region transcription start site region 40895
Gm34428 4 9006056 to 9008559 2503 - lncRNA gene predicted gene, 34428
Cpgi14013 4 9027839 to 9028341 502 CpG island CpG island 14013
Gm34288 4 9128924 to 9142887 13963 - lncRNA gene predicted gene, 34288
Cpgi14014 4 9135901 to 9136073 172 CpG island CpG island 14014
Gm23423 4 9210003 to 9210108 105 + snRNA gene predicted gene, 23423
Gm26548 4 9267323 to 9269915 2592 - lincRNA gene predicted gene, 26548
Tssr36453 4 9269285 to 9269335 50 + TSS region transcription start site region 36453
Clvs1 4 9269293 to 9451691 182398 + protein coding gene clavesin 1
Cpgi14015 4 9269309 to 9269814 505 CpG island CpG island 14015
Tssr36454 4 9269338 to 9269362 24 + TSS region transcription start site region 36454
Gm11816 4 9283972 to 9287391 3419 - antisense lncRNA gene predicted gene 11816
Tssr40896 4 9287317 to 9287350 33 - TSS region transcription start site region 40896
D4Mit317 4 9327517 to 9327609 92 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 317
Cpgi14016 4 9337605 to 9337813 208 CpG island CpG island 14016
D130060J02Rik 4 9395378 to 9400974 5596 unclassified non-coding RNA gene RIKEN cDNA D130060J02 gene
D4Mit264 4 9395525 to 9395649 124 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 264
Ksc2 4 9395525 to 9574055 178530 QTL keratinocyte stem cell locus 2
Bbaa13 4 9395525 to 9395649 124 QTL B.burgdorferi-associated arthritis 13
Gm11817 4 9431961 to 9447199 15238 - antisense lncRNA gene predicted gene 11817
Asph 4 9449085 to 9669344 220259 - protein coding gene aspartate-beta-hydroxylase
Tssr40897 4 9451152 to 9451158 6 - TSS region transcription start site region 40897
Cpgi14017 4 9502619 to 9502861 242 CpG island CpG island 14017
Tssr40898 4 9526214 to 9526223 9 - TSS region transcription start site region 40898
D4Mit263 4 9569846 to 9569955 109 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 263
Gm19130 4 9569963 to 9570493 530 - pseudogene predicted gene, 19130
D4Mit181 4 9573923 to 9574055 132 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 181
Tssr40899 4 9602044 to 9602080 36 - TSS region transcription start site region 40899
Tssr40900 4 9613890 to 9613924 34 - TSS region transcription start site region 40900
Tssr40901 4 9643622 to 9643633 11 - TSS region transcription start site region 40901
Tssr40902 4 9643638 to 9643714 76 - TSS region transcription start site region 40902
Tssr40903 4 9651333 to 9651336 3 - TSS region transcription start site region 40903
Tssr40904 4 9652565 to 9652569 4 - TSS region transcription start site region 40904
Tssr40905 4 9661094 to 9661105 11 - TSS region transcription start site region 40905
Cpgi14018 4 9668408 to 9669499 1091 CpG island CpG island 14018
Tssr40906 4 9669068 to 9669113 45 - TSS region transcription start site region 40906
Gm25677 4 9669279 to 9669350 71 + miRNA gene predicted gene, 25677
Sicd3 4 43760862 to 9395525 -34365337 QTL seizure-induced cell death 3