Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:86843277-89223288

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213 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kidq4 4 17892616 to 89063979 71171363 QTL kidney weight QTL 4
W6q15 4 17892616 to 89063979 71171363 QTL weight 6 weeks QTL 15
Lvrq9 4 17892616 to 89063979 71171363 QTL liver weight QTL 9
Spir2 4 50682795 to 88592400 37909605 QTL Streptococcus pneumoniae infection resistance 2
Lyr 4 80834208 to 88850951 8016743 QTL lymphoma resistance
Dennd4c 4 86748555 to 86850603 102048 + protein coding gene DENN/MADD domain containing 4C
Tssr37749 4 86844779 to 86844790 11 + TSS region transcription start site region 37749
Tssr37750 4 86844800 to 86844815 15 + TSS region transcription start site region 37750
Rps6 4 86854660 to 86857412 2752 - protein coding gene ribosomal protein S6
Cpgi14422 4 86856593 to 86857979 1386 CpG island CpG island 14422
Tssr42347 4 86857117 to 86857146 29 - TSS region transcription start site region 42347
Tssr42348 4 86857292 to 86857303 11 - TSS region transcription start site region 42348
Tssr42349 4 86857312 to 86857349 37 - TSS region transcription start site region 42349
Tssr42350 4 86857365 to 86857415 50 - TSS region transcription start site region 42350
Tssr37751 4 86857446 to 86857478 32 + TSS region transcription start site region 37751
Cpgi14423 4 86874046 to 86874845 799 CpG island CpG island 14423
Acer2 4 86874340 to 86932490 58150 + protein coding gene alkaline ceramidase 2
Tssr37752 4 86874414 to 86874438 24 + TSS region transcription start site region 37752
Tssr37753 4 86874989 to 86874995 6 + TSS region transcription start site region 37753
Cpgi14424 4 86885815 to 86886504 689 CpG island CpG island 14424
Tssr37754 4 86886013 to 86886039 26 + TSS region transcription start site region 37754
Tssr37755 4 86914272 to 86914276 4 + TSS region transcription start site region 37755
Tssr37756 4 86930704 to 86930713 9 + TSS region transcription start site region 37756
Tssr37757 4 86930714 to 86930726 12 + TSS region transcription start site region 37757
Tssr37758 4 86930733 to 86930742 9 + TSS region transcription start site region 37758
Tssr37759 4 86930749 to 86930759 10 + TSS region transcription start site region 37759
Tssr37760 4 86930762 to 86930773 11 + TSS region transcription start site region 37760
Cpgi14425 4 86930763 to 86931170 407 CpG island CpG island 14425
Slc24a2 4 86983124 to 87230477 247353 - protein coding gene solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
Tssr42351 4 86984197 to 86984208 11 - TSS region transcription start site region 42351
5330421F21Rik 4 87023851 to 87025644 1793 unclassified gene RIKEN cDNA 5330421F21 gene
Cpgi14426 4 87056592 to 87056845 253 CpG island CpG island 14426
Tssr42352 4 87073269 to 87073274 5 - TSS region transcription start site region 42352
Gm34039 4 87100404 to 87104926 4522 + pseudogene predicted gene, 34039
Pgia27 4 87148990 to 87149227 237 QTL proteoglycan induced arthritis 27
D4Mit45 4 87148990 to 87149227 237 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 45
Tssr42353 4 87161618 to 87161629 11 - TSS region transcription start site region 42353
Tssr42354 4 87161681 to 87161692 11 - TSS region transcription start site region 42354
Tssr42355 4 87226771 to 87226775 4 - TSS region transcription start site region 42355
Tssr42356 4 87227590 to 87227596 6 - TSS region transcription start site region 42356
Cpgi14427 4 87229676 to 87230836 1160 CpG island CpG island 14427
Tssr1223 4 87230021 to 87230032 11 - TSS region transcription start site region 1223
Tssr1224 4 87230033 to 87230060 27 - TSS region transcription start site region 1224
Tssr1225 4 87230097 to 87230110 13 - TSS region transcription start site region 1225
Tssr42357 4 87230414 to 87230432 18 - TSS region transcription start site region 42357
Tssr42358 4 87230435 to 87230476 41 - TSS region transcription start site region 42358
Tssr42359 4 87230491 to 87230501 10 - TSS region transcription start site region 42359
Gm12600 4 87298362 to 87301270 2908 + lincRNA gene predicted gene 12600
Gm23154 4 87432272 to 87432336 64 + miRNA gene predicted gene, 23154
D4Dcr9 4 87476076 to 87476171 95 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 9
Gm34180 4 87530893 to 87668521 137628 - lncRNA gene predicted gene, 34180
Gm12604 4 87580780 to 87581308 528 + pseudogene predicted gene 12604
Tssr37761 4 87718445 to 87718451 6 + TSS region transcription start site region 37761
Mllt3 4 87769925 to 88033364 263439 - protein coding gene myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3
D4Mit349 4 87792890 to 87792964 74 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 349
4832441B07Rik 4 87797091 to 87798689 1598 unclassified gene RIKEN cDNA 4832441B07 gene
D4Dcr10 4 87803407 to 87803508 101 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 10
Tssr42360 4 87806263 to 87806274 11 - TSS region transcription start site region 42360
Tssr42361 4 87806276 to 87806292 16 - TSS region transcription start site region 42361
Tssr42362 4 87806296 to 87806325 29 - TSS region transcription start site region 42362
Tssr42363 4 87806332 to 87806345 13 - TSS region transcription start site region 42363
Tssr1226 4 87806346 to 87806353 7 - TSS region transcription start site region 1226
Tssr42364 4 87829519 to 87829524 5 - TSS region transcription start site region 42364
Tssr42365 4 87881737 to 87881762 25 - TSS region transcription start site region 42365
Tssr42366 4 87944663 to 87944667 4 - TSS region transcription start site region 42366
Gm34232 4 87974620 to 87985631 11011 - lncRNA gene predicted gene, 34232
Tssr42367 4 87983282 to 87983306 24 - TSS region transcription start site region 42367
Tssr42368 4 87986262 to 87986266 4 - TSS region transcription start site region 42368
Tssr42369 4 88001710 to 88001732 22 - TSS region transcription start site region 42369
Tssr42370 4 88019527 to 88019531 4 - TSS region transcription start site region 42370
Cpgi14428 4 88031239 to 88033791 2552 CpG island CpG island 14428
Tssr42371 4 88031700 to 88031732 32 - TSS region transcription start site region 42371
Tssr42372 4 88032735 to 88032749 14 - TSS region transcription start site region 42372
Tssr42373 4 88032769 to 88032802 33 - TSS region transcription start site region 42373
Tssr42374 4 88032805 to 88032822 17 - TSS region transcription start site region 42374
Tssr42375 4 88032839 to 88032863 24 - TSS region transcription start site region 42375
Tssr42376 4 88033277 to 88033288 11 - TSS region transcription start site region 42376
Tssr42377 4 88033289 to 88033315 26 - TSS region transcription start site region 42377
Tssr42378 4 88033328 to 88033373 45 - TSS region transcription start site region 42378
Gm12631 4 88033501 to 88034998 1497 + antisense lncRNA gene predicted gene 12631
Gm12646 4 88043804 to 88044041 237 + pseudogene predicted gene 12646
Cpgi14429 4 88094356 to 88095263 907 CpG island CpG island 14429
Tssr37762 4 88094599 to 88094653 54 + TSS region transcription start site region 37762
Focad 4 88094630 to 88411011 316381 + protein coding gene focadhesin
Tssr37763 4 88094660 to 88094672 12 + TSS region transcription start site region 37763
Mir491 4 88122040 to 88122125 85 + miRNA gene microRNA 491
Tssr37764 4 88124432 to 88124441 9 + TSS region transcription start site region 37764
Gm12645 4 88151696 to 88151970 274 + pseudogene predicted gene 12645
Tssr37765 4 88157693 to 88157698 5 + TSS region transcription start site region 37765
Tssr1227 4 88165553 to 88165559 6 + TSS region transcription start site region 1227
Tssr37766 4 88179553 to 88179568 15 + TSS region transcription start site region 37766
Tssr37767 4 88209782 to 88209822 40 + TSS region transcription start site region 37767
Tssr37768 4 88353856 to 88353867 11 + TSS region transcription start site region 37768
Tssr37769 4 88353888 to 88353899 11 + TSS region transcription start site region 37769
Tssr37770 4 88353900 to 88353913 13 + TSS region transcription start site region 37770
Hacd4 4 88407687 to 88438936 31249 - protein coding gene 3-hydroxyacyl-CoA dehydratase 4
Tssr42379 4 88416087 to 88416100 13 - TSS region transcription start site region 42379
Tssr42380 4 88418264 to 88418281 17 - TSS region transcription start site region 42380
Tssr42381 4 88419000 to 88419013 13 - TSS region transcription start site region 42381
Tssr42382 4 88428081 to 88428085 4 - TSS region transcription start site region 42382
Tssr42383 4 88429001 to 88429007 6 - TSS region transcription start site region 42383
Gdap6 4 88431729 to 88432926 1197 unclassified gene ganglioside-induced differentiation-associated-protein 6
Tssr42384 4 88438127 to 88438131 4 - TSS region transcription start site region 42384
Tssr42385 4 88438885 to 88438894 9 - TSS region transcription start site region 42385
Tssr42386 4 88438900 to 88438933 33 - TSS region transcription start site region 42386
Ifnb1 4 88522025 to 88522774 749 - protein coding gene interferon beta 1, fibroblast
Tssr42387 4 88522842 to 88522847 5 - TSS region transcription start site region 42387
Ifna15 4 88557673 to 88558245 572 - protein coding gene interferon alpha 15
Ifna14 4 88571229 to 88571798 569 - protein coding gene interferon alpha 14
Ifna-ps1 4 88578887 to 88580573 1686 - pseudogene interferon alpha gene, pseudogene 1
Ifna9 4 88591813 to 88592385 572 - protein coding gene interferon alpha 9
Mrpl48-ps 4 88599175 to 88599810 635 - pseudogene mitochondrial ribosomal protein L48 pseudogene
Ifna12 4 88602580 to 88603376 796 - protein coding gene interferon alpha 12
Gm12601 4 88612653 to 88614044 1391 - pseudogene predicted gene 12601
C87499 4 88627320 to 88634186 6866 - protein coding gene expressed sequence C87499
Ifna13 4 88643641 to 88644459 818 - protein coding gene interferon alpha 13
Gm13281 4 88648738 to 88649304 566 - pseudogene predicted gene 13281
Ifna16 4 88676287 to 88676856 569 - protein coding gene interferon alpha 16
D4Wsm1 4 88682921 to 88683067 146 DNA segment DNA segment, Chr 4, WSM 1
Tlsr1 4 88682921 to 95069538 6386617 QTL thymic lymphoma suppressor region 1
Ifna2 4 88683207 to 88683779 572 - protein coding gene interferon alpha 2
Ifnab 4 88690599 to 88691268 669 - protein coding gene interferon alpha B
Gm13273 4 88696191 to 88696698 507 - pseudogene predicted gene 13273
Gm13282 4 88707909 to 88708453 544 - pseudogene predicted gene 13282
Klhl9 4 88718292 to 88722465 4173 - protein coding gene kelch-like 9
Tssr42388 4 88719101 to 88719106 5 - TSS region transcription start site region 42388
Tssr42389 4 88720026 to 88720031 5 - TSS region transcription start site region 42389
Cpgi14430 4 88721767 to 88722701 934 CpG island CpG island 14430
Gm26566 4 88721805 to 88722842 1037 + protein coding gene predicted gene, 26566
Tssr42390 4 88722454 to 88722485 31 - TSS region transcription start site region 42390
Tssr42391 4 88722502 to 88722515 13 - TSS region transcription start site region 42391
Tssr1228 4 88722521 to 88722529 8 - TSS region transcription start site region 1228
Gm13274 4 88723681 to 88744717 21036 - antisense lncRNA gene predicted gene 13274
Tssr42392 4 88744348 to 88744353 5 - TSS region transcription start site region 42392
Gm49884 4 88754471 to 88754678 207 + pseudogene predicted gene, 49884
Gm13271 4 88754868 to 88755416 548 + protein coding gene predicted gene 13271
Cpgi14431 4 88757416 to 88757761 345 CpG island CpG island 14431
Gm13286 4 88757844 to 88758380 536 + pseudogene predicted gene 13286
Gm10583 4 88758171 to 88758570 399 - pseudogene predicted gene 10583
Gm13283 4 88760774 to 88761584 810 + protein coding gene predicted gene 13283
Gm10582 4 88761101 to 88761500 399 - pseudogene predicted gene 10582
Gm13284 4 88763709 to 88771606 7897 + pseudogene predicted gene 13284
Gm10581 4 88771550 to 88771784 234 - pseudogene predicted gene 10581
Gm13290 4 88773834 to 88774801 967 + protein coding gene predicted gene 13290
Gm10580 4 88774321 to 88774720 399 - pseudogene predicted gene 10580
Gm13289 4 88776922 to 88777470 548 + protein coding gene predicted gene 13289
Gm13272 4 88779850 to 88780660 810 + protein coding gene predicted gene 13272
Ifnz 4 88782131 to 88783592 1461 + protein coding gene interferon zeta
Gm26525 4 88784455 to 88794391 9936 - lincRNA gene predicted gene, 26525
Gm13276 4 88785709 to 88786257 548 + protein coding gene predicted gene 13276
Gm13277 4 88788632 to 88789180 548 + protein coding gene predicted gene 13277
Gm13278 4 88791550 to 88792098 548 + protein coding gene predicted gene 13278
Gm13275 4 88794487 to 88795035 548 + protein coding gene predicted gene 13275
Gm26867 4 88796143 to 88800224 4081 - lincRNA gene predicted gene, 26867
Gm13279 4 88797397 to 88797945 548 + protein coding gene predicted gene 13279
Gm13285 4 88800320 to 88800868 548 + protein coding gene predicted gene 13285
Gm13287 4 88803254 to 88803802 548 + protein coding gene predicted gene 13287
Gm13288 4 88805531 to 88808380 2849 + protein coding gene predicted gene 13288
Ifna7 4 88816228 to 88816800 572 + protein coding gene interferon alpha 7
Ifna11 4 88819959 to 88820531 572 + protein coding gene interferon alpha 11
Ifna6 4 88827416 to 88827985 569 + protein coding gene interferon alpha 6
Ifna5 4 88835525 to 88836094 569 + protein coding gene interferon alpha 5
Ifna4 4 88841861 to 88842421 560 + protein coding gene interferon alpha 4
Ifna1 4 88850087 to 88850656 569 + protein coding gene interferon alpha 1
Ifna 4 88850617 to 88850951 334 complex/cluster/region interferon alpha
4930553M12Rik 4 88867233 to 88868380 1147 - lincRNA gene RIKEN cDNA 4930553M12 gene
Cpgi14432 4 88868074 to 88868450 376 CpG island CpG island 14432
Tssr37771 4 88868474 to 88868500 26 + TSS region transcription start site region 37771
Gm34457 4 88871741 to 88874895 3154 + lncRNA gene predicted gene, 34457
Ifne 4 88879538 to 88880201 663 - protein coding gene interferon epsilon
Tssr42393 4 88880206 to 88880228 22 - TSS region transcription start site region 42393
Gm49890 4 88909855 to 88938521 28666 - lincRNA gene predicted gene, 49890
Mir31 4 88910557 to 88910662 105 - miRNA gene microRNA 31
Tssr42394 4 88910569 to 88910573 4 - TSS region transcription start site region 42394
Tssr42395 4 88917244 to 88917254 10 - TSS region transcription start site region 42395
Tssr42396 4 88917281 to 88917288 7 - TSS region transcription start site region 42396
Cpgi14433 4 88937811 to 88938913 1102 CpG island CpG island 14433
Tssr42397 4 88938423 to 88938433 10 - TSS region transcription start site region 42397
Tssr42398 4 88938435 to 88938479 44 - TSS region transcription start site region 42398
Tssr42399 4 88938877 to 88938888 11 - TSS region transcription start site region 42399
Tssr42400 4 88942037 to 88942053 16 - TSS region transcription start site region 42400
Gm34568 4 88956416 to 89031301 74885 + lncRNA gene predicted gene, 34568
Tssr42401 4 88982591 to 88982624 33 - TSS region transcription start site region 42401
Gm49891 4 88995118 to 89039192 44074 - lincRNA gene predicted gene, 49891
Tssr37772 4 89050240 to 89050248 8 + TSS region transcription start site region 37772
Tssr37773 4 89050273 to 89050280 7 + TSS region transcription start site region 37773
Tssr37774 4 89050296 to 89050324 28 + TSS region transcription start site region 37774
Wincr1 4 89050307 to 89084610 34303 + lincRNA gene WNT induced non-coding RNA 1
Nss1 4 89063832 to 89063979 147 QTL NOD Sjogren's syndrome 1
Pitm2 4 89063832 to 89063979 147 QTL prion incubation time 2
D4Mit27 4 89063832 to 89063979 147 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 27
Berr4 4 89063832 to 89063979 147 QTL berghei resistance locus 4
D4Mit301 4 89099304 to 89099407 103 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 301
Gm12602 4 89100664 to 89128226 27562 - lncRNA gene predicted gene 12602
Tssr37775 4 89123314 to 89123325 11 + TSS region transcription start site region 37775
Tssr37776 4 89123331 to 89123347 16 + TSS region transcription start site region 37776
Tssr37777 4 89124249 to 89124260 11 + TSS region transcription start site region 37777
Tssr42402 4 89126542 to 89126556 14 - TSS region transcription start site region 42402
Tssr42403 4 89128217 to 89128237 20 - TSS region transcription start site region 42403
Cpgi14434 4 89137113 to 89138007 894 CpG island CpG island 14434