Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:86660033-87800060

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cocrb5 4 86648386 to 86670060 21674 QTL cocaine related behavior 5
Plin2 4 86648386 to 86670060 21674 - protein coding gene perilipin 2
Tssr42334 4 86660164 to 86660254 90 - TSS region transcription start site region 42334
Tssr42335 4 86668487 to 86668560 73 - TSS region transcription start site region 42335
Tssr42336 4 86668702 to 86668743 41 - TSS region transcription start site region 42336
Tssr42337 4 86669450 to 86669461 11 - TSS region transcription start site region 42337
Tssr42338 4 86669472 to 86669485 13 - TSS region transcription start site region 42338
Tssr42339 4 86669492 to 86669507 15 - TSS region transcription start site region 42339
Cpgi14420 4 86669909 to 86670174 265 CpG island CpG island 14420
Tssr42340 4 86669986 to 86670025 39 - TSS region transcription start site region 42340
Tssr42341 4 86670030 to 86670043 13 - TSS region transcription start site region 42341
Tssr37738 4 86670193 to 86670204 11 + TSS region transcription start site region 37738
Tssr1221 4 86670249 to 86670253 4 + TSS region transcription start site region 1221
Tssr42342 4 86672399 to 86672404 5 - TSS region transcription start site region 42342
Tssr42343 4 86672558 to 86672563 5 - TSS region transcription start site region 42343
Tssr37739 4 86689598 to 86689605 7 + TSS region transcription start site region 37739
Tssr42344 4 86691440 to 86691450 10 - TSS region transcription start site region 42344
Tssr42345 4 86691464 to 86691480 16 - TSS region transcription start site region 42345
Gm42312 4 86710969 to 86743814 32845 + lncRNA gene predicted gene, 42312
Tssr37740 4 86711089 to 86711114 25 + TSS region transcription start site region 37740
Tssr37741 4 86711138 to 86711151 13 + TSS region transcription start site region 37741
Gm6521 4 86747526 to 86752316 4790 unclassified gene predicted gene 6521
Cpgi14421 4 86748294 to 86749353 1059 CpG island CpG island 14421
Tssr37742 4 86748526 to 86748558 32 + TSS region transcription start site region 37742
Dennd4c 4 86748555 to 86850603 102048 + protein coding gene DENN/MADD domain containing 4C
Tssr37743 4 86748561 to 86748572 11 + TSS region transcription start site region 37743
Tssr37744 4 86748583 to 86748598 15 + TSS region transcription start site region 37744
Tssr37745 4 86748618 to 86748623 5 + TSS region transcription start site region 37745
Tssr37746 4 86748635 to 86748645 10 + TSS region transcription start site region 37746
Tssr37747 4 86748851 to 86748862 11 + TSS region transcription start site region 37747
Tssr42346 4 86749396 to 86749410 14 - TSS region transcription start site region 42346
4833420L08Rik 4 86768487 to 86769802 1315 unclassified gene RIKEN cDNA 4833420L08 gene
Tssr1222 4 86796565 to 86796568 3 + TSS region transcription start site region 1222
Gm12630 4 86817794 to 86818577 783 - pseudogene predicted gene 12630
Tssr37748 4 86823904 to 86823910 6 + TSS region transcription start site region 37748
Tssr37749 4 86844779 to 86844790 11 + TSS region transcription start site region 37749
Tssr37750 4 86844800 to 86844815 15 + TSS region transcription start site region 37750
Rps6 4 86854660 to 86857412 2752 - protein coding gene ribosomal protein S6
Cpgi14422 4 86856593 to 86857979 1386 CpG island CpG island 14422
Tssr42347 4 86857117 to 86857146 29 - TSS region transcription start site region 42347
Tssr42348 4 86857292 to 86857303 11 - TSS region transcription start site region 42348
Tssr42349 4 86857312 to 86857349 37 - TSS region transcription start site region 42349
Tssr42350 4 86857365 to 86857415 50 - TSS region transcription start site region 42350
Tssr37751 4 86857446 to 86857478 32 + TSS region transcription start site region 37751
Cpgi14423 4 86874046 to 86874845 799 CpG island CpG island 14423
Acer2 4 86874340 to 86932490 58150 + protein coding gene alkaline ceramidase 2
Tssr37752 4 86874414 to 86874438 24 + TSS region transcription start site region 37752
Tssr37753 4 86874989 to 86874995 6 + TSS region transcription start site region 37753
Cpgi14424 4 86885815 to 86886504 689 CpG island CpG island 14424
Tssr37754 4 86886013 to 86886039 26 + TSS region transcription start site region 37754
Tssr37755 4 86914272 to 86914276 4 + TSS region transcription start site region 37755
Tssr37756 4 86930704 to 86930713 9 + TSS region transcription start site region 37756
Tssr37757 4 86930714 to 86930726 12 + TSS region transcription start site region 37757
Tssr37758 4 86930733 to 86930742 9 + TSS region transcription start site region 37758
Tssr37759 4 86930749 to 86930759 10 + TSS region transcription start site region 37759
Tssr37760 4 86930762 to 86930773 11 + TSS region transcription start site region 37760
Cpgi14425 4 86930763 to 86931170 407 CpG island CpG island 14425
Slc24a2 4 86983124 to 87230477 247353 - protein coding gene solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
Tssr42351 4 86984197 to 86984208 11 - TSS region transcription start site region 42351
5330421F21Rik 4 87023851 to 87025644 1793 unclassified gene RIKEN cDNA 5330421F21 gene
Cpgi14426 4 87056592 to 87056845 253 CpG island CpG island 14426
Tssr42352 4 87073269 to 87073274 5 - TSS region transcription start site region 42352
Gm34039 4 87100404 to 87104926 4522 + pseudogene predicted gene, 34039
Pgia27 4 87148990 to 87149227 237 QTL proteoglycan induced arthritis 27
D4Mit45 4 87148990 to 87149227 237 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 45
Tssr42353 4 87161618 to 87161629 11 - TSS region transcription start site region 42353
Tssr42354 4 87161681 to 87161692 11 - TSS region transcription start site region 42354
Tssr42355 4 87226771 to 87226775 4 - TSS region transcription start site region 42355
Tssr42356 4 87227590 to 87227596 6 - TSS region transcription start site region 42356
Cpgi14427 4 87229676 to 87230836 1160 CpG island CpG island 14427
Tssr1223 4 87230021 to 87230032 11 - TSS region transcription start site region 1223
Tssr1224 4 87230033 to 87230060 27 - TSS region transcription start site region 1224
Tssr1225 4 87230097 to 87230110 13 - TSS region transcription start site region 1225
Tssr42357 4 87230414 to 87230432 18 - TSS region transcription start site region 42357
Tssr42358 4 87230435 to 87230476 41 - TSS region transcription start site region 42358
Tssr42359 4 87230491 to 87230501 10 - TSS region transcription start site region 42359
Gm12600 4 87298362 to 87301270 2908 + lincRNA gene predicted gene 12600
Gm23154 4 87432272 to 87432336 64 + miRNA gene predicted gene, 23154
D4Dcr9 4 87476076 to 87476171 95 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 9
Gm34180 4 87530893 to 87668521 137628 - lncRNA gene predicted gene, 34180
Gm12604 4 87580780 to 87581308 528 + pseudogene predicted gene 12604
Tssr37761 4 87718445 to 87718451 6 + TSS region transcription start site region 37761
Mllt3 4 87769925 to 88033364 263439 - protein coding gene myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3
D4Mit349 4 87792890 to 87792964 74 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 349
4832441B07Rik 4 87797091 to 87798689 1598 unclassified gene RIKEN cDNA 4832441B07 gene