Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:8535544-13935565

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376 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Whl 4 8426721 to 9574055 1147334 heritable phenotypic marker wheels
Cpgi14005 4 8535445 to 8536494 1049 CpG island CpG island 14005
Rab2a 4 8535587 to 8607702 72115 + protein coding gene RAB2A, member RAS oncogene family
Tssr36410 4 8535604 to 8535717 113 + TSS region transcription start site region 36410
Tssr36411 4 8535729 to 8535738 9 + TSS region transcription start site region 36411
Tssr36412 4 8535818 to 8535851 33 + TSS region transcription start site region 36412
Tssr36413 4 8553747 to 8553751 4 + TSS region transcription start site region 36413
D130047N11Rik 4 8582775 to 8586326 3551 unclassified gene RIKEN cDNA D130047N11 gene
C530036F05Rik 4 8596992 to 8599711 2719 unclassified gene RIKEN cDNA C530036F05 gene
Tssr1114 4 8625733 to 8625735 2 + TSS region transcription start site region 1114
Gm42253 4 8635181 to 8646297 11116 - lncRNA gene predicted gene, 42253
Tssr40887 4 8642812 to 8642816 4 - TSS region transcription start site region 40887
Cpgi14006 4 8646904 to 8647795 891 CpG island CpG island 14006
Gm8273 4 8646963 to 8649081 2118 - unclassified gene predicted gene 8273
Cpgi14007 4 8648083 to 8648583 500 CpG island CpG island 14007
Tssr40888 4 8648438 to 8648459 21 - TSS region transcription start site region 40888
Gm11809 4 8672636 to 8673582 946 - pseudogene predicted gene 11809
Tssr40889 4 8673720 to 8673729 9 - TSS region transcription start site region 40889
Cpgi14008 4 8689636 to 8692377 2741 CpG island CpG island 14008
Tssr36414 4 8690399 to 8690453 54 + TSS region transcription start site region 36414
Chd7 4 8690406 to 8867659 177253 + protein coding gene chromodomain helicase DNA binding protein 7
Tssr36415 4 8690537 to 8690583 46 + TSS region transcription start site region 36415
Tssr36416 4 8691303 to 8691380 77 + TSS region transcription start site region 36416
Tssr36417 4 8711764 to 8711767 3 + TSS region transcription start site region 36417
Gm46841 4 8720972 to 8731950 10978 + protein coding gene predicted gene, 46841
Tssr36418 4 8731997 to 8732000 3 + TSS region transcription start site region 36418
Tssr36419 4 8735931 to 8735942 11 + TSS region transcription start site region 36419
Tssr36420 4 8735946 to 8735963 17 + TSS region transcription start site region 36420
Tssr36421 4 8735969 to 8736085 116 + TSS region transcription start site region 36421
Tssr1115 4 8736088 to 8736099 11 + TSS region transcription start site region 1115
Cpgi14009 4 8751730 to 8752288 558 CpG island CpG island 14009
Tssr36422 4 8752330 to 8752351 21 + TSS region transcription start site region 36422
Tssr36423 4 8785543 to 8785550 7 + TSS region transcription start site region 36423
Tssr36424 4 8785651 to 8785688 37 + TSS region transcription start site region 36424
Tssr36425 4 8800212 to 8800237 25 + TSS region transcription start site region 36425
Tssr36426 4 8803427 to 8803441 14 + TSS region transcription start site region 36426
Tssr36427 4 8806245 to 8806252 7 + TSS region transcription start site region 36427
Tssr36428 4 8811279 to 8811290 11 + TSS region transcription start site region 36428
Tssr36429 4 8811323 to 8811339 16 + TSS region transcription start site region 36429
Tssr36430 4 8811341 to 8811342 1 + TSS region transcription start site region 36430
Tssr36431 4 8811346 to 8811357 11 + TSS region transcription start site region 36431
Tssr36432 4 8811363 to 8811377 14 + TSS region transcription start site region 36432
Tssr36433 4 8811421 to 8811440 19 + TSS region transcription start site region 36433
Tssr36434 4 8821771 to 8821780 9 + TSS region transcription start site region 36434
Tssr36435 4 8821783 to 8821802 19 + TSS region transcription start site region 36435
Tssr1116 4 8822135 to 8822139 4 + TSS region transcription start site region 1116
Tssr40890 4 8822627 to 8822634 7 - TSS region transcription start site region 40890
Tssr36436 4 8822782 to 8822804 22 + TSS region transcription start site region 36436
Tssr36437 4 8822809 to 8822818 9 + TSS region transcription start site region 36437
Tssr40891 4 8823241 to 8823251 10 - TSS region transcription start site region 40891
Tssr36438 4 8837710 to 8837722 12 + TSS region transcription start site region 36438
Tssr36439 4 8837728 to 8837754 26 + TSS region transcription start site region 36439
Tssr36440 4 8837825 to 8837836 11 + TSS region transcription start site region 36440
Tssr36441 4 8838989 to 8839003 14 + TSS region transcription start site region 36441
Tssr36442 4 8840334 to 8840347 13 + TSS region transcription start site region 36442
Tssr36443 4 8840365 to 8840391 26 + TSS region transcription start site region 36443
Tssr36444 4 8840483 to 8840493 10 + TSS region transcription start site region 36444
Tssr36445 4 8842377 to 8842381 4 + TSS region transcription start site region 36445
Tssr36446 4 8842711 to 8842714 3 + TSS region transcription start site region 36446
Tssr1117 4 8843035 to 8843038 3 + TSS region transcription start site region 1117
Tssr36447 4 8854198 to 8854204 6 + TSS region transcription start site region 36447
Cpgi14010 4 8865760 to 8866532 772 CpG island CpG island 14010
Gm46842 4 8901941 to 8910658 8717 - lncRNA gene predicted gene, 46842
D4Mit360 4 8905620 to 8905732 112 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology-360
Cpgi14011 4 8911114 to 8911939 825 CpG island CpG island 14011
Tssr40892 4 8912860 to 8912892 32 - TSS region transcription start site region 40892
Tssr36448 4 8913007 to 8913018 11 + TSS region transcription start site region 36448
Tssr36449 4 8913019 to 8913029 10 + TSS region transcription start site region 36449
Tssr40893 4 8913686 to 8913689 3 - TSS region transcription start site region 40893
Tssr36450 4 8913812 to 8913846 34 + TSS region transcription start site region 36450
Tssr36451 4 8915755 to 8915791 36 + TSS region transcription start site region 36451
Cpgi14012 4 8922079 to 8922361 282 CpG island CpG island 14012
Tssr40894 4 8926733 to 8926758 25 - TSS region transcription start site region 40894
Tssr1118 4 8939228 to 8939239 11 + TSS region transcription start site region 1118
Tssr36452 4 8939749 to 8939768 19 + TSS region transcription start site region 36452
Rps18-ps2 4 8941259 to 8941656 397 + pseudogene ribosomal protein S18, pseudogene 2
Tssr40895 4 8980268 to 8980270 2 - TSS region transcription start site region 40895
Gm34428 4 9006056 to 9008559 2503 - lncRNA gene predicted gene, 34428
Cpgi14013 4 9027839 to 9028341 502 CpG island CpG island 14013
Gm34288 4 9128924 to 9142887 13963 - lncRNA gene predicted gene, 34288
Cpgi14014 4 9135901 to 9136073 172 CpG island CpG island 14014
Gm23423 4 9210003 to 9210108 105 + snRNA gene predicted gene, 23423
Gm26548 4 9267323 to 9269915 2592 - lincRNA gene predicted gene, 26548
Tssr36453 4 9269285 to 9269335 50 + TSS region transcription start site region 36453
Clvs1 4 9269293 to 9451691 182398 + protein coding gene clavesin 1
Cpgi14015 4 9269309 to 9269814 505 CpG island CpG island 14015
Tssr36454 4 9269338 to 9269362 24 + TSS region transcription start site region 36454
Gm11816 4 9283972 to 9287391 3419 - antisense lncRNA gene predicted gene 11816
Tssr40896 4 9287317 to 9287350 33 - TSS region transcription start site region 40896
D4Mit317 4 9327517 to 9327609 92 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 317
Cpgi14016 4 9337605 to 9337813 208 CpG island CpG island 14016
D130060J02Rik 4 9395378 to 9400974 5596 unclassified non-coding RNA gene RIKEN cDNA D130060J02 gene
Ksc2 4 9395525 to 9574055 178530 QTL keratinocyte stem cell locus 2
Bbaa13 4 9395525 to 9395649 124 QTL B.burgdorferi-associated arthritis 13
D4Mit264 4 9395525 to 9395649 124 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 264
Gm11817 4 9431961 to 9447199 15238 - antisense lncRNA gene predicted gene 11817
Asph 4 9449085 to 9669344 220259 - protein coding gene aspartate-beta-hydroxylase
Tssr40897 4 9451152 to 9451158 6 - TSS region transcription start site region 40897
Cpgi14017 4 9502619 to 9502861 242 CpG island CpG island 14017
Tssr40898 4 9526214 to 9526223 9 - TSS region transcription start site region 40898
D4Mit263 4 9569846 to 9569955 109 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 263
Gm19130 4 9569963 to 9570493 530 - pseudogene predicted gene, 19130
D4Mit181 4 9573923 to 9574055 132 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 181
Tssr40899 4 9602044 to 9602080 36 - TSS region transcription start site region 40899
Tssr40900 4 9613890 to 9613924 34 - TSS region transcription start site region 40900
Tssr40901 4 9643622 to 9643633 11 - TSS region transcription start site region 40901
Tssr40902 4 9643638 to 9643714 76 - TSS region transcription start site region 40902
Tssr40903 4 9651333 to 9651336 3 - TSS region transcription start site region 40903
Tssr40904 4 9652565 to 9652569 4 - TSS region transcription start site region 40904
Tssr40905 4 9661094 to 9661105 11 - TSS region transcription start site region 40905
Cpgi14018 4 9668408 to 9669499 1091 CpG island CpG island 14018
Tssr40906 4 9669068 to 9669113 45 - TSS region transcription start site region 40906
Gm25677 4 9669279 to 9669350 71 + miRNA gene predicted gene, 25677
Gm24152 4 9695645 to 9695807 162 - snRNA gene predicted gene, 24152
D4Mit101 4 9702613 to 9702715 102 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 101
Gm34947 4 9748386 to 9751427 3041 + lncRNA gene predicted gene, 34947
Cpgi14019 4 9770493 to 9771078 585 CpG island CpG island 14019
4930412C18Rik 4 9770585 to 9823411 52826 + lncRNA gene RIKEN cDNA 4930412C18 gene
Tssr36455 4 9770625 to 9770689 64 + TSS region transcription start site region 36455
Cpgi14020 4 9775018 to 9775213 195 CpG island CpG island 14020
Cpgi14021 4 9825824 to 9826009 185 CpG island CpG island 14021
Gm42254 4 9830338 to 9840397 10059 - lncRNA gene predicted gene, 42254
Cpgi14022 4 9843161 to 9843366 205 CpG island CpG island 14022
Cpgi14023 4 9843606 to 9844896 1290 CpG island CpG island 14023
Tssr36456 4 9844349 to 9844368 19 + TSS region transcription start site region 36456
Gdf6 4 9844372 to 9862345 17973 + protein coding gene growth differentiation factor 6
Cpgi14024 4 9846770 to 9847651 881 CpG island CpG island 14024
Cpgi14025 4 9859143 to 9860434 1291 CpG island CpG island 14025
Cpgi14026 4 9874627 to 9874969 342 CpG island CpG island 14026
4930448K20Rik 4 9915965 to 9917397 1432 - pseudogene RIKEN cDNA 4930448K20 gene
Tssr40907 4 9917377 to 9917400 23 - TSS region transcription start site region 40907
Tssr36457 4 9952979 to 9952981 2 + TSS region transcription start site region 36457
Gm11834 4 9958208 to 9959130 922 + pseudogene predicted gene 11834
Gm11835 4 9959354 to 9960016 662 + pseudogene predicted gene 11835
D4Mit227 4 10000496 to 10000676 180 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 227
Gm35008 4 10147612 to 10158241 10629 + lncRNA gene predicted gene, 35008
Gm46879 4 10392712 to 10409934 17222 - lncRNA gene predicted gene, 46879
Gm11814 4 10438815 to 10439743 928 - pseudogene predicted gene 11814
Gm11815 4 10487956 to 10489362 1406 - lincRNA gene predicted gene 11815
1700123O12Rik 4 10508031 to 10797802 289771 - lincRNA gene RIKEN cDNA 1700123O12 gene
Gm11813 4 10580812 to 10581102 290 + pseudogene predicted gene 11813
Tssr40908 4 10797792 to 10797802 10 - TSS region transcription start site region 40908
Tssr40909 4 10797807 to 10797814 7 - TSS region transcription start site region 40909
Gm12920 4 10813543 to 10814728 1185 + pseudogene predicted gene 12920
Mir3471-1 4 10845500 to 10845630 130 - miRNA gene microRNA 3471-1
Gm12918 4 10848420 to 10849055 635 + pseudogene predicted gene 12918
Gm12919 4 10853843 to 10855436 1593 + pseudogene predicted gene 12919
Cpgi14027 4 10874048 to 10875164 1116 CpG island CpG island 14027
n-TSaga9 4 10874064 to 10874145 81 + tRNA gene nuclear encoded tRNA serine 9 (anticodon AGA)
2610301B20Rik 4 10874498 to 10899425 24927 + protein coding gene RIKEN cDNA 2610301B20 gene
Tssr1119 4 10874507 to 10874526 19 + TSS region transcription start site region 1119
Tssr36458 4 10874538 to 10874607 69 + TSS region transcription start site region 36458
Tssr36459 4 10877336 to 10877339 3 + TSS region transcription start site region 36459
Tssr36460 4 10932677 to 10932688 11 + TSS region transcription start site region 36460
Tssr36461 4 10946584 to 10946598 14 + TSS region transcription start site region 36461
Rps11-ps3 4 10946608 to 10947093 485 + pseudogene ribosomal protein S11, pseudogene 3
Gm2401 4 10987740 to 10990315 2575 + pseudogene predicted gene 2401
Tssr40910 4 10988251 to 10988252 1 - TSS region transcription start site region 40910
Plekhf2 4 10988662 to 11007619 18957 - protein coding gene pleckstrin homology domain containing, family F (with FYVE domain) member 2
Tssr40911 4 10989115 to 10989120 5 - TSS region transcription start site region 40911
Tssr40912 4 10998648 to 10998652 4 - TSS region transcription start site region 40912
Cpgi14028 4 11006946 to 11008247 1301 CpG island CpG island 14028
Tssr40913 4 11007522 to 11007533 11 - TSS region transcription start site region 40913
Tssr40914 4 11007541 to 11007634 93 - TSS region transcription start site region 40914
Tssr40915 4 11007635 to 11007655 20 - TSS region transcription start site region 40915
Gm46843 4 11010449 to 11026700 16251 - lncRNA gene predicted gene, 46843
Gm35429 4 11031796 to 11049868 18072 - lncRNA gene predicted gene, 35429
Ndufaf6 4 11051045 to 11076205 25160 - protein coding gene NADH:ubiquinone oxidoreductase complex assembly factor 6
Cpgi14029 4 11075747 to 11076484 737 CpG island CpG island 14029
Tssr40916 4 11076160 to 11076211 51 - TSS region transcription start site region 40916
Tssr1120 4 11105395 to 11105397 2 + TSS region transcription start site region 1120
Gm11827 4 11123350 to 11126998 3648 + lincRNA gene predicted gene 11827
Tssr36462 4 11123950 to 11123980 30 + TSS region transcription start site region 36462
Gm11829 4 11133327 to 11133608 281 + pseudogene predicted gene 11829
Mir684-2 4 11134097 to 11134182 85 + miRNA gene microRNA 684-2
Gm11830 4 11144710 to 11145270 560 + pseudogene predicted gene 11830
Tssr40917 4 11147717 to 11147730 13 - TSS region transcription start site region 40917
Tssr36463 4 11155184 to 11155202 18 + TSS region transcription start site region 36463
Cpgi14030 4 11155994 to 11156966 972 CpG island CpG island 14030
Tssr40918 4 11156209 to 11156224 15 - TSS region transcription start site region 40918
Tssr40919 4 11156242 to 11156258 16 - TSS region transcription start site region 40919
Tssr36464 4 11156411 to 11156453 42 + TSS region transcription start site region 36464
Trp53inp1 4 11156441 to 11174377 17936 + protein coding gene transformation related protein 53 inducible nuclear protein 1
Tssr36465 4 11156468 to 11156483 15 + TSS region transcription start site region 36465
Tssr36466 4 11156765 to 11156778 13 + TSS region transcription start site region 36466
Tssr36467 4 11156828 to 11156837 9 + TSS region transcription start site region 36467
Tssr36468 4 11159316 to 11159321 5 + TSS region transcription start site region 36468
Tssr36469 4 11165259 to 11165286 27 + TSS region transcription start site region 36469
Tssr36470 4 11169799 to 11169808 9 + TSS region transcription start site region 36470
Tssr36471 4 11169913 to 11169942 29 + TSS region transcription start site region 36471
Tssr36472 4 11171898 to 11171964 66 + TSS region transcription start site region 36472
Tssr36473 4 11173832 to 11173881 49 + TSS region transcription start site region 36473
A630034I12Rik 4 11175962 to 11191230 15268 - lncRNA gene RIKEN cDNA A630034I12 gene
Cpgi14031 4 11190312 to 11192465 2153 CpG island CpG island 14031
Tssr40920 4 11191214 to 11191233 19 - TSS region transcription start site region 40920
Ccne2 4 11191351 to 11204779 13428 + protein coding gene cyclin E2
Tssr36474 4 11191417 to 11191424 7 + TSS region transcription start site region 36474
Tssr36475 4 11191776 to 11191789 13 + TSS region transcription start site region 36475
Ints8 4 11199158 to 11254258 55100 - protein coding gene integrator complex subunit 8
Tssr36476 4 11202410 to 11202413 3 + TSS region transcription start site region 36476