Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:83887769-92177802

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472 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lvrq9 4 17892616 to 89063979 71171363 QTL liver weight QTL 9
Kidq4 4 17892616 to 89063979 71171363 QTL kidney weight QTL 4
W6q15 4 17892616 to 89063979 71171363 QTL weight 6 weeks QTL 15
Spir2 4 50682795 to 88592400 37909605 QTL Streptococcus pneumoniae infection resistance 2
Nmf191 4 53550839 to 86450248 32899409 heritable phenotypic marker neuroscience mutagenesis facility, 191
Stmm3 4 63365294 to 91117397 27752103 QTL skin tumor modifier of MSM 3
Lyr 4 80834208 to 88850951 8016743 QTL lymphoma resistance
Gm11415 4 83884738 to 83888858 4120 - lincRNA gene predicted gene 11415
D4Mit143 4 83970208 to 83970351 143 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 143
Mbsyd 4 83970208 to 83970351 143 QTL metabolic syndrome
D4Mit328 4 84000697 to 84000820 123 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 328
6030471H07Rik 4 84042040 to 84044879 2839 - lincRNA gene RIKEN cDNA 6030471H07 gene
Gm33480 4 84072395 to 84081923 9528 - lncRNA gene predicted gene, 33480
Gm33410 4 84072618 to 84101430 28812 + lncRNA gene predicted gene, 33410
Tssr37697 4 84104825 to 84104829 4 + TSS region transcription start site region 37697
Gm12416 4 84104895 to 84105902 1007 + pseudogene predicted gene 12416
Gm42310 4 84110347 to 84113352 3005 + lncRNA gene predicted gene, 42310
Gm12414 4 84126350 to 84130289 3939 - lincRNA gene predicted gene 12414
Gm33597 4 84133256 to 84220733 87477 - lncRNA gene predicted gene, 33597
Bnc2 4 84275095 to 84675275 400180 - protein coding gene basonuclin 2
Tssr42308 4 84357042 to 84357045 3 - TSS region transcription start site region 42308
Tssr42309 4 84383928 to 84383932 4 - TSS region transcription start site region 42309
Gm12421 4 84428818 to 84429124 306 - pseudogene predicted gene 12421
Tssr37698 4 84429454 to 84429472 18 + TSS region transcription start site region 37698
Tssr42310 4 84456182 to 84456199 17 - TSS region transcription start site region 42310
Tssr42311 4 84518564 to 84518569 5 - TSS region transcription start site region 42311
Tssr42312 4 84532255 to 84532256 1 - TSS region transcription start site region 42312
Cpgi14409 4 84545201 to 84546035 834 CpG island CpG island 14409
Tssr42313 4 84546284 to 84546300 16 - TSS region transcription start site region 42313
Tssr42314 4 84546456 to 84546472 16 - TSS region transcription start site region 42314
Tssr42315 4 84548393 to 84548403 10 - TSS region transcription start site region 42315
Cpgi14410 4 84674153 to 84676229 2076 CpG island CpG island 14410
Tssr42316 4 84674989 to 84675006 17 - TSS region transcription start site region 42316
Tssr42317 4 84675376 to 84675394 18 - TSS region transcription start site region 42317
Tssr42318 4 84675396 to 84675411 15 - TSS region transcription start site region 42318
Tssr42319 4 84675413 to 84675428 15 - TSS region transcription start site region 42319
Tssr1219 4 84675693 to 84675730 37 - TSS region transcription start site region 1219
D4Jkn1 4 84688852 to 84688972 120 DNA segment DNA segment, Chr 4, Ian Jackson 1
Gm12420 4 84697863 to 84698910 1047 + pseudogene predicted gene 12420
Tssr37699 4 84698008 to 84698026 18 + TSS region transcription start site region 37699
Tssr37700 4 84698132 to 84698161 29 + TSS region transcription start site region 37700
Tssr37701 4 84698304 to 84698326 22 + TSS region transcription start site region 37701
Gm12415 4 84741475 to 84742291 816 + lincRNA gene predicted gene 12415
Cpgi14411 4 84883858 to 84885099 1241 CpG island CpG island 14411
Tssr37702 4 84884276 to 84884314 38 + TSS region transcription start site region 37702
Cntln 4 84884309 to 85131921 247612 + protein coding gene centlein, centrosomal protein
Tssr37703 4 84884366 to 84884407 41 + TSS region transcription start site region 37703
Tssr37704 4 84884418 to 84884457 39 + TSS region transcription start site region 37704
Gm12418 4 84915896 to 84916837 941 + pseudogene predicted gene 12418
Gm12419 4 84923554 to 84924189 635 - pseudogene predicted gene 12419
Gm2700 4 85176526 to 85177026 500 - pseudogene predicted gene 2700
Gm12417 4 85176527 to 85176929 402 + pseudogene predicted gene 12417
Cpgi14412 4 85205080 to 85206302 1222 CpG island CpG island 14412
Tssr37705 4 85205120 to 85205131 11 + TSS region transcription start site region 37705
Tssr37706 4 85205136 to 85205149 13 + TSS region transcription start site region 37706
Tssr37707 4 85205151 to 85205192 41 + TSS region transcription start site region 37707
Tssr37708 4 85205209 to 85205228 19 + TSS region transcription start site region 37708
Tssr37709 4 85205417 to 85205495 78 + TSS region transcription start site region 37709
Sh3gl2 4 85205456 to 85389380 183924 + protein coding gene SH3-domain GRB2-like 2
Tssr37710 4 85205503 to 85205516 13 + TSS region transcription start site region 37710
Tssr37711 4 85205518 to 85205522 4 + TSS region transcription start site region 37711
Tssr37712 4 85205675 to 85205685 10 + TSS region transcription start site region 37712
Gm12413 4 85245451 to 85245762 311 - pseudogene predicted gene 12413
Tssr42320 4 85373240 to 85373243 3 - TSS region transcription start site region 42320
Tssr37713 4 85379330 to 85379347 17 + TSS region transcription start site region 37713
Tssr37714 4 85388095 to 85388106 11 + TSS region transcription start site region 37714
Tssr37715 4 85388130 to 85388142 12 + TSS region transcription start site region 37715
Tssr37716 4 85388224 to 85388239 15 + TSS region transcription start site region 37716
Tssr37717 4 85388264 to 85388285 21 + TSS region transcription start site region 37717
Tssr37718 4 85388818 to 85388822 4 + TSS region transcription start site region 37718
Tssr37719 4 85413991 to 85413996 5 + TSS region transcription start site region 37719
D4Mit302 4 85504232 to 85504339 107 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 302
Cpgi14413 4 85514143 to 85514698 555 CpG island CpG island 14413
Adamtsl1 4 85514172 to 86428385 914213 + protein coding gene ADAMTS-like 1
Tssr37720 4 85514283 to 85514292 9 + TSS region transcription start site region 37720
Tssr37721 4 85514301 to 85514342 41 + TSS region transcription start site region 37721
Tssr37722 4 85514350 to 85514364 14 + TSS region transcription start site region 37722
Gm26069 4 85909911 to 85910187 276 + unclassified non-coding RNA gene predicted gene, 26069
Gm8949 4 85921109 to 85921944 835 - pseudogene predicted gene 8949
Gm25811 4 86043394 to 86043494 100 - snRNA gene predicted gene, 25811
Tssr37723 4 86053659 to 86053681 22 + TSS region transcription start site region 37723
Tssr37724 4 86053687 to 86053721 34 + TSS region transcription start site region 37724
Tssr37725 4 86053887 to 86053987 100 + TSS region transcription start site region 37725
Tssr37726 4 86053994 to 86054012 18 + TSS region transcription start site region 37726
D4Ertd103e 4 86220521 to 86220720 199 DNA segment DNA segment, Chr 4, ERATO Doi 103, expressed
Cpgi14414 4 86276893 to 86277201 308 CpG island CpG island 14414
Cpgi14415 4 86342052 to 86342335 283 CpG island CpG island 14415
Cpgi14416 4 86342871 to 86343112 241 CpG island CpG island 14416
Gm33730 4 86421254 to 86440949 19695 - lncRNA gene predicted gene, 33730
Cpgi14417 4 86426495 to 86426725 230 CpG island CpG island 14417
Gm12550 4 86442013 to 86442341 328 - pseudogene predicted gene 12550
Saxo1 4 86444641 to 86558328 113687 - protein coding gene stabilizer of axonemal microtubules 1
D4Mit327 4 86450143 to 86450248 105 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 327
Gm26017 4 86509152 to 86509225 73 + snRNA gene predicted gene, 26017
D4Dcr8 4 86549811 to 86549907 96 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 8
Tssr42321 4 86558266 to 86558307 41 - TSS region transcription start site region 42321
Tssr42322 4 86558310 to 86558332 22 - TSS region transcription start site region 42322
Tssr1220 4 86558394 to 86558398 4 + TSS region transcription start site region 1220
Tssr37727 4 86558430 to 86558448 18 + TSS region transcription start site region 37727
Saxo1os 4 86558446 to 86559804 1358 + antisense lncRNA gene stabilizer of axonemal microtubules 1, opposite strand
Cpgi14418 4 86575313 to 86576610 1297 CpG island CpG island 14418
Tssr37728 4 86575668 to 86575689 21 + TSS region transcription start site region 37728
Rraga 4 86575673 to 86577285 1612 + protein coding gene Ras-related GTP binding A
Tssr37729 4 86575696 to 86575718 22 + TSS region transcription start site region 37729
Tssr37730 4 86575720 to 86575731 11 + TSS region transcription start site region 37730
Tssr37731 4 86575740 to 86575751 11 + TSS region transcription start site region 37731
Tssr37732 4 86575783 to 86575794 11 + TSS region transcription start site region 37732
Tssr37733 4 86575796 to 86575807 11 + TSS region transcription start site region 37733
Tssr37734 4 86576910 to 86576921 11 + TSS region transcription start site region 37734
Tssr37735 4 86577103 to 86577116 13 + TSS region transcription start site region 37735
Haus6 4 86578855 to 86612055 33200 - protein coding gene HAUS augmin-like complex, subunit 6
Tssr42323 4 86581796 to 86581800 4 - TSS region transcription start site region 42323
Scarna8 4 86586453 to 86586570 117 - snoRNA gene small Cajal body-specific RNA 8
Cpgi14419 4 86611463 to 86612239 776 CpG island CpG island 14419
Tssr42324 4 86611962 to 86611973 11 - TSS region transcription start site region 42324
Tssr42325 4 86611987 to 86612001 14 - TSS region transcription start site region 42325
Tssr42326 4 86612009 to 86612062 53 - TSS region transcription start site region 42326
Gm12551 4 86627075 to 86631251 4176 - pseudogene predicted gene 12551
Tssr42327 4 86633160 to 86633165 5 - TSS region transcription start site region 42327
Tssr42328 4 86648203 to 86648214 11 - TSS region transcription start site region 42328
Cocrb5 4 86648386 to 86670060 21674 QTL cocaine related behavior 5
Plin2 4 86648386 to 86670060 21674 - protein coding gene perilipin 2
Tssr42329 4 86655503 to 86655519 16 - TSS region transcription start site region 42329
Tssr42330 4 86655520 to 86655531 11 - TSS region transcription start site region 42330
Tssr42331 4 86656152 to 86656164 12 - TSS region transcription start site region 42331
Tssr42332 4 86657023 to 86657048 25 - TSS region transcription start site region 42332
Tssr37736 4 86657258 to 86657317 59 + TSS region transcription start site region 37736
Tssr42333 4 86657369 to 86657387 18 - TSS region transcription start site region 42333
Tssr37737 4 86658606 to 86658635 29 + TSS region transcription start site region 37737
Tssr42334 4 86660164 to 86660254 90 - TSS region transcription start site region 42334
Tssr42335 4 86668487 to 86668560 73 - TSS region transcription start site region 42335
Tssr42336 4 86668702 to 86668743 41 - TSS region transcription start site region 42336
Tssr42337 4 86669450 to 86669461 11 - TSS region transcription start site region 42337
Tssr42338 4 86669472 to 86669485 13 - TSS region transcription start site region 42338
Tssr42339 4 86669492 to 86669507 15 - TSS region transcription start site region 42339
Cpgi14420 4 86669909 to 86670174 265 CpG island CpG island 14420
Tssr42340 4 86669986 to 86670025 39 - TSS region transcription start site region 42340
Tssr42341 4 86670030 to 86670043 13 - TSS region transcription start site region 42341
Tssr37738 4 86670193 to 86670204 11 + TSS region transcription start site region 37738
Tssr1221 4 86670249 to 86670253 4 + TSS region transcription start site region 1221
Tssr42342 4 86672399 to 86672404 5 - TSS region transcription start site region 42342
Tssr42343 4 86672558 to 86672563 5 - TSS region transcription start site region 42343
Tssr37739 4 86689598 to 86689605 7 + TSS region transcription start site region 37739
Tssr42344 4 86691440 to 86691450 10 - TSS region transcription start site region 42344
Tssr42345 4 86691464 to 86691480 16 - TSS region transcription start site region 42345
Gm42312 4 86710969 to 86743814 32845 + lncRNA gene predicted gene, 42312
Tssr37740 4 86711089 to 86711114 25 + TSS region transcription start site region 37740
Tssr37741 4 86711138 to 86711151 13 + TSS region transcription start site region 37741
Gm6521 4 86747526 to 86752316 4790 unclassified gene predicted gene 6521
Cpgi14421 4 86748294 to 86749353 1059 CpG island CpG island 14421
Tssr37742 4 86748526 to 86748558 32 + TSS region transcription start site region 37742
Dennd4c 4 86748555 to 86850603 102048 + protein coding gene DENN/MADD domain containing 4C
Tssr37743 4 86748561 to 86748572 11 + TSS region transcription start site region 37743
Tssr37744 4 86748583 to 86748598 15 + TSS region transcription start site region 37744
Tssr37745 4 86748618 to 86748623 5 + TSS region transcription start site region 37745
Tssr37746 4 86748635 to 86748645 10 + TSS region transcription start site region 37746
Tssr37747 4 86748851 to 86748862 11 + TSS region transcription start site region 37747
Tssr42346 4 86749396 to 86749410 14 - TSS region transcription start site region 42346
4833420L08Rik 4 86768487 to 86769802 1315 unclassified gene RIKEN cDNA 4833420L08 gene
Tssr1222 4 86796565 to 86796568 3 + TSS region transcription start site region 1222
Gm12630 4 86817794 to 86818577 783 - pseudogene predicted gene 12630
Tssr37748 4 86823904 to 86823910 6 + TSS region transcription start site region 37748
Tssr37749 4 86844779 to 86844790 11 + TSS region transcription start site region 37749
Tssr37750 4 86844800 to 86844815 15 + TSS region transcription start site region 37750
Rps6 4 86854660 to 86857412 2752 - protein coding gene ribosomal protein S6
Cpgi14422 4 86856593 to 86857979 1386 CpG island CpG island 14422
Tssr42347 4 86857117 to 86857146 29 - TSS region transcription start site region 42347
Tssr42348 4 86857292 to 86857303 11 - TSS region transcription start site region 42348
Tssr42349 4 86857312 to 86857349 37 - TSS region transcription start site region 42349
Tssr42350 4 86857365 to 86857415 50 - TSS region transcription start site region 42350
Tssr37751 4 86857446 to 86857478 32 + TSS region transcription start site region 37751
Cpgi14423 4 86874046 to 86874845 799 CpG island CpG island 14423
Acer2 4 86874340 to 86932490 58150 + protein coding gene alkaline ceramidase 2
Tssr37752 4 86874414 to 86874438 24 + TSS region transcription start site region 37752
Tssr37753 4 86874989 to 86874995 6 + TSS region transcription start site region 37753
Cpgi14424 4 86885815 to 86886504 689 CpG island CpG island 14424
Tssr37754 4 86886013 to 86886039 26 + TSS region transcription start site region 37754
Tssr37755 4 86914272 to 86914276 4 + TSS region transcription start site region 37755
Tssr37756 4 86930704 to 86930713 9 + TSS region transcription start site region 37756
Tssr37757 4 86930714 to 86930726 12 + TSS region transcription start site region 37757
Tssr37758 4 86930733 to 86930742 9 + TSS region transcription start site region 37758
Tssr37759 4 86930749 to 86930759 10 + TSS region transcription start site region 37759
Tssr37760 4 86930762 to 86930773 11 + TSS region transcription start site region 37760
Cpgi14425 4 86930763 to 86931170 407 CpG island CpG island 14425
Slc24a2 4 86983124 to 87230477 247353 - protein coding gene solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
Tssr42351 4 86984197 to 86984208 11 - TSS region transcription start site region 42351
5330421F21Rik 4 87023851 to 87025644 1793 unclassified gene RIKEN cDNA 5330421F21 gene
Cpgi14426 4 87056592 to 87056845 253 CpG island CpG island 14426
Tssr42352 4 87073269 to 87073274 5 - TSS region transcription start site region 42352
Gm34039 4 87100404 to 87104926 4522 + pseudogene predicted gene, 34039
Pgia27 4 87148990 to 87149227 237 QTL proteoglycan induced arthritis 27
D4Mit45 4 87148990 to 87149227 237 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 45
Tssr42353 4 87161618 to 87161629 11 - TSS region transcription start site region 42353
Tssr42354 4 87161681 to 87161692 11 - TSS region transcription start site region 42354
Tssr42355 4 87226771 to 87226775 4 - TSS region transcription start site region 42355
Tssr42356 4 87227590 to 87227596 6 - TSS region transcription start site region 42356
Cpgi14427 4 87229676 to 87230836 1160 CpG island CpG island 14427
Tssr1223 4 87230021 to 87230032 11 - TSS region transcription start site region 1223
Tssr1224 4 87230033 to 87230060 27 - TSS region transcription start site region 1224
Tssr1225 4 87230097 to 87230110 13 - TSS region transcription start site region 1225