Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:83511350-84745289

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi14408 4 83524995 to 83526029 1034 CpG island CpG island 14408
Tssr42306 4 83525280 to 83525322 42 - TSS region transcription start site region 42306
Tssr37693 4 83525540 to 83525616 76 + TSS region transcription start site region 37693
Ccdc171 4 83525545 to 83864670 339125 + protein coding gene coiled-coil domain containing 171
Tssr37694 4 83525617 to 83525629 12 + TSS region transcription start site region 37694
Gm25899 4 83527628 to 83527768 140 - snRNA gene predicted gene, 25899
Tssr1218 4 83527642 to 83527645 3 + TSS region transcription start site region 1218
Tssr42307 4 83527765 to 83527767 2 - TSS region transcription start site region 42307
Tssr37695 4 83597278 to 83597287 9 + TSS region transcription start site region 37695
Gm27046 4 83597303 to 83597765 462 + pseudogene predicted gene, 27046
Gm18687 4 83611016 to 83612219 1203 - pseudogene predicted gene, 18687
Cbx3-ps3 4 83701084 to 83702036 952 + pseudogene chromobox 3, pseudogene 3
Gm26968 4 83743677 to 83744157 480 + sense intronic lncRNA gene predicted gene, 26968
Tssr37696 4 83773638 to 83773642 4 + TSS region transcription start site region 37696
Gm42309 4 83826128 to 83842051 15923 - lncRNA gene predicted gene, 42309
Tlsr4 4 83838893 to 83839021 128 QTL thymic lymphoma suppressor region 4
D4Mit116 4 83838893 to 83839021 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 116
Habiir3 4 83838893 to 94405503 10566610 QTL hyperoxic acute lung injury imprinted region 3
Gm11415 4 83884738 to 83888858 4120 - lincRNA gene predicted gene 11415
Mbsyd 4 83970208 to 83970351 143 QTL metabolic syndrome
D4Mit143 4 83970208 to 83970351 143 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 143
D4Mit328 4 84000697 to 84000820 123 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 328
6030471H07Rik 4 84042040 to 84044879 2839 - lincRNA gene RIKEN cDNA 6030471H07 gene
Gm33480 4 84072395 to 84081923 9528 - lncRNA gene predicted gene, 33480
Gm33410 4 84072618 to 84101430 28812 + lncRNA gene predicted gene, 33410
Tssr37697 4 84104825 to 84104829 4 + TSS region transcription start site region 37697
Gm12416 4 84104895 to 84105902 1007 + pseudogene predicted gene 12416
Gm42310 4 84110347 to 84113352 3005 + lncRNA gene predicted gene, 42310
Gm12414 4 84126350 to 84130289 3939 - lincRNA gene predicted gene 12414
Gm33597 4 84133256 to 84220733 87477 - lncRNA gene predicted gene, 33597
Bnc2 4 84275095 to 84675275 400180 - protein coding gene basonuclin 2
Tssr42308 4 84357042 to 84357045 3 - TSS region transcription start site region 42308
Tssr42309 4 84383928 to 84383932 4 - TSS region transcription start site region 42309
Gm12421 4 84428818 to 84429124 306 - pseudogene predicted gene 12421
Tssr37698 4 84429454 to 84429472 18 + TSS region transcription start site region 37698
Tssr42310 4 84456182 to 84456199 17 - TSS region transcription start site region 42310
Tssr42311 4 84518564 to 84518569 5 - TSS region transcription start site region 42311
Tssr42312 4 84532255 to 84532256 1 - TSS region transcription start site region 42312
Cpgi14409 4 84545201 to 84546035 834 CpG island CpG island 14409
Tssr42313 4 84546284 to 84546300 16 - TSS region transcription start site region 42313
Tssr42314 4 84546456 to 84546472 16 - TSS region transcription start site region 42314
Tssr42315 4 84548393 to 84548403 10 - TSS region transcription start site region 42315
Cpgi14410 4 84674153 to 84676229 2076 CpG island CpG island 14410
Tssr42316 4 84674989 to 84675006 17 - TSS region transcription start site region 42316
Tssr42317 4 84675376 to 84675394 18 - TSS region transcription start site region 42317
Tssr42318 4 84675396 to 84675411 15 - TSS region transcription start site region 42318
Tssr42319 4 84675413 to 84675428 15 - TSS region transcription start site region 42319
Tssr1219 4 84675693 to 84675730 37 - TSS region transcription start site region 1219
D4Jkn1 4 84688852 to 84688972 120 DNA segment DNA segment, Chr 4, Ian Jackson 1
Gm12420 4 84697863 to 84698910 1047 + pseudogene predicted gene 12420
Tssr37699 4 84698008 to 84698026 18 + TSS region transcription start site region 37699
Tssr37700 4 84698132 to 84698161 29 + TSS region transcription start site region 37700
Tssr37701 4 84698304 to 84698326 22 + TSS region transcription start site region 37701
Gm12415 4 84741475 to 84742291 816 + lincRNA gene predicted gene 12415