Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:83448304-85948326

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110 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Snapc3 4 83417724 to 83467676 49952 + protein coding gene small nuclear RNA activating complex, polypeptide 3
Psip1 4 83455680 to 83486459 30779 - protein coding gene PC4 and SFRS1 interacting protein 1
Tssr42296 4 83462174 to 83462183 9 - TSS region transcription start site region 42296
Tssr1216 4 83465040 to 83465081 41 + TSS region transcription start site region 1216
Tssr1217 4 83465098 to 83465116 18 + TSS region transcription start site region 1217
Tssr42297 4 83467209 to 83467218 9 - TSS region transcription start site region 42297
Tssr42298 4 83468632 to 83468652 20 - TSS region transcription start site region 42298
A930007D18Rik 4 83471742 to 83473017 1275 unclassified gene RIKEN cDNA A930007D18 gene
Cpgi14407 4 83485652 to 83486942 1290 CpG island CpG island 14407
Tssr42299 4 83485786 to 83485824 38 - TSS region transcription start site region 42299
Tssr42300 4 83485845 to 83485890 45 - TSS region transcription start site region 42300
Tssr42301 4 83485914 to 83485934 20 - TSS region transcription start site region 42301
Tssr42302 4 83486241 to 83486276 35 - TSS region transcription start site region 42302
Tssr42303 4 83486391 to 83486402 11 - TSS region transcription start site region 42303
Tssr42304 4 83486415 to 83486439 24 - TSS region transcription start site region 42304
Tssr42305 4 83486457 to 83486478 21 - TSS region transcription start site region 42305
Gm11414 4 83500499 to 83500761 262 - pseudogene predicted gene 11414
Gm10154 4 83505185 to 83505538 353 - pseudogene predicted gene 10154
Gm42308 4 83508280 to 83511290 3010 - lncRNA gene predicted gene, 42308
D4Mit185 4 83508596 to 83508700 104 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 185
Cpgi14408 4 83524995 to 83526029 1034 CpG island CpG island 14408
Tssr42306 4 83525280 to 83525322 42 - TSS region transcription start site region 42306
Tssr37693 4 83525540 to 83525616 76 + TSS region transcription start site region 37693
Ccdc171 4 83525545 to 83864670 339125 + protein coding gene coiled-coil domain containing 171
Tssr37694 4 83525617 to 83525629 12 + TSS region transcription start site region 37694
Gm25899 4 83527628 to 83527768 140 - snRNA gene predicted gene, 25899
Tssr1218 4 83527642 to 83527645 3 + TSS region transcription start site region 1218
Tssr42307 4 83527765 to 83527767 2 - TSS region transcription start site region 42307
Tssr37695 4 83597278 to 83597287 9 + TSS region transcription start site region 37695
Gm27046 4 83597303 to 83597765 462 + pseudogene predicted gene, 27046
Gm18687 4 83611016 to 83612219 1203 - pseudogene predicted gene, 18687
Cbx3-ps3 4 83701084 to 83702036 952 + pseudogene chromobox 3, pseudogene 3
Gm26968 4 83743677 to 83744157 480 + sense intronic lncRNA gene predicted gene, 26968
Tssr37696 4 83773638 to 83773642 4 + TSS region transcription start site region 37696
Gm42309 4 83826128 to 83842051 15923 - lncRNA gene predicted gene, 42309
D4Mit116 4 83838893 to 83839021 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 116
Habiir3 4 83838893 to 94405503 10566610 QTL hyperoxic acute lung injury imprinted region 3
Tlsr4 4 83838893 to 83839021 128 QTL thymic lymphoma suppressor region 4
Gm11415 4 83884738 to 83888858 4120 - lincRNA gene predicted gene 11415
D4Mit143 4 83970208 to 83970351 143 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 143
Mbsyd 4 83970208 to 83970351 143 QTL metabolic syndrome
D4Mit328 4 84000697 to 84000820 123 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 328
6030471H07Rik 4 84042040 to 84044879 2839 - lincRNA gene RIKEN cDNA 6030471H07 gene
Gm33480 4 84072395 to 84081923 9528 - lncRNA gene predicted gene, 33480
Gm33410 4 84072618 to 84101430 28812 + lncRNA gene predicted gene, 33410
Tssr37697 4 84104825 to 84104829 4 + TSS region transcription start site region 37697
Gm12416 4 84104895 to 84105902 1007 + pseudogene predicted gene 12416
Gm42310 4 84110347 to 84113352 3005 + lncRNA gene predicted gene, 42310
Gm12414 4 84126350 to 84130289 3939 - lincRNA gene predicted gene 12414
Gm33597 4 84133256 to 84220733 87477 - lncRNA gene predicted gene, 33597
Bnc2 4 84275095 to 84675275 400180 - protein coding gene basonuclin 2
Tssr42308 4 84357042 to 84357045 3 - TSS region transcription start site region 42308
Tssr42309 4 84383928 to 84383932 4 - TSS region transcription start site region 42309
Gm12421 4 84428818 to 84429124 306 - pseudogene predicted gene 12421
Tssr37698 4 84429454 to 84429472 18 + TSS region transcription start site region 37698
Tssr42310 4 84456182 to 84456199 17 - TSS region transcription start site region 42310
Tssr42311 4 84518564 to 84518569 5 - TSS region transcription start site region 42311
Tssr42312 4 84532255 to 84532256 1 - TSS region transcription start site region 42312
Cpgi14409 4 84545201 to 84546035 834 CpG island CpG island 14409
Tssr42313 4 84546284 to 84546300 16 - TSS region transcription start site region 42313
Tssr42314 4 84546456 to 84546472 16 - TSS region transcription start site region 42314
Tssr42315 4 84548393 to 84548403 10 - TSS region transcription start site region 42315
Cpgi14410 4 84674153 to 84676229 2076 CpG island CpG island 14410
Tssr42316 4 84674989 to 84675006 17 - TSS region transcription start site region 42316
Tssr42317 4 84675376 to 84675394 18 - TSS region transcription start site region 42317
Tssr42318 4 84675396 to 84675411 15 - TSS region transcription start site region 42318
Tssr42319 4 84675413 to 84675428 15 - TSS region transcription start site region 42319
Tssr1219 4 84675693 to 84675730 37 - TSS region transcription start site region 1219
D4Jkn1 4 84688852 to 84688972 120 DNA segment DNA segment, Chr 4, Ian Jackson 1
Gm12420 4 84697863 to 84698910 1047 + pseudogene predicted gene 12420
Tssr37699 4 84698008 to 84698026 18 + TSS region transcription start site region 37699
Tssr37700 4 84698132 to 84698161 29 + TSS region transcription start site region 37700
Tssr37701 4 84698304 to 84698326 22 + TSS region transcription start site region 37701
Gm12415 4 84741475 to 84742291 816 + lincRNA gene predicted gene 12415
Cpgi14411 4 84883858 to 84885099 1241 CpG island CpG island 14411
Tssr37702 4 84884276 to 84884314 38 + TSS region transcription start site region 37702
Cntln 4 84884309 to 85131921 247612 + protein coding gene centlein, centrosomal protein
Tssr37703 4 84884366 to 84884407 41 + TSS region transcription start site region 37703
Tssr37704 4 84884418 to 84884457 39 + TSS region transcription start site region 37704
Gm12418 4 84915896 to 84916837 941 + pseudogene predicted gene 12418
Gm12419 4 84923554 to 84924189 635 - pseudogene predicted gene 12419
Gm2700 4 85176526 to 85177026 500 - pseudogene predicted gene 2700
Gm12417 4 85176527 to 85176929 402 + pseudogene predicted gene 12417
Cpgi14412 4 85205080 to 85206302 1222 CpG island CpG island 14412
Tssr37705 4 85205120 to 85205131 11 + TSS region transcription start site region 37705
Tssr37706 4 85205136 to 85205149 13 + TSS region transcription start site region 37706
Tssr37707 4 85205151 to 85205192 41 + TSS region transcription start site region 37707
Tssr37708 4 85205209 to 85205228 19 + TSS region transcription start site region 37708
Tssr37709 4 85205417 to 85205495 78 + TSS region transcription start site region 37709
Sh3gl2 4 85205456 to 85389380 183924 + protein coding gene SH3-domain GRB2-like 2
Tssr37710 4 85205503 to 85205516 13 + TSS region transcription start site region 37710
Tssr37711 4 85205518 to 85205522 4 + TSS region transcription start site region 37711
Tssr37712 4 85205675 to 85205685 10 + TSS region transcription start site region 37712
Gm12413 4 85245451 to 85245762 311 - pseudogene predicted gene 12413
Tssr42320 4 85373240 to 85373243 3 - TSS region transcription start site region 42320
Tssr37713 4 85379330 to 85379347 17 + TSS region transcription start site region 37713
Tssr37714 4 85388095 to 85388106 11 + TSS region transcription start site region 37714
Tssr37715 4 85388130 to 85388142 12 + TSS region transcription start site region 37715
Tssr37716 4 85388224 to 85388239 15 + TSS region transcription start site region 37716
Tssr37717 4 85388264 to 85388285 21 + TSS region transcription start site region 37717
Tssr37718 4 85388818 to 85388822 4 + TSS region transcription start site region 37718
Tssr37719 4 85413991 to 85413996 5 + TSS region transcription start site region 37719
D4Mit302 4 85504232 to 85504339 107 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 302
Cpgi14413 4 85514143 to 85514698 555 CpG island CpG island 14413
Adamtsl1 4 85514172 to 86428385 914213 + protein coding gene ADAMTS-like 1
Tssr37720 4 85514283 to 85514292 9 + TSS region transcription start site region 37720
Tssr37721 4 85514301 to 85514342 41 + TSS region transcription start site region 37721
Tssr37722 4 85514350 to 85514364 14 + TSS region transcription start site region 37722
Gm26069 4 85909911 to 85910187 276 + unclassified non-coding RNA gene predicted gene, 26069
Gm8949 4 85921109 to 85921944 835 - pseudogene predicted gene 8949