Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:83258677-84229157

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ttc39b 4 83220300 to 83324255 103955 - protein coding gene tetratricopeptide repeat domain 39B
Tssr42286 4 83266038 to 83266081 43 - TSS region transcription start site region 42286
Cpgi14404 4 83273643 to 83273835 192 CpG island CpG island 14404
Tssr42287 4 83273746 to 83273797 51 - TSS region transcription start site region 42287
Gm42307 4 83283094 to 83287822 4728 + lncRNA gene predicted gene, 42307
Tssr42288 4 83285125 to 83285138 13 - TSS region transcription start site region 42288
Tssr42289 4 83285141 to 83285169 28 - TSS region transcription start site region 42289
Tssr42290 4 83285171 to 83285214 43 - TSS region transcription start site region 42290
Gm23412 4 83285804 to 83285910 106 - snRNA gene predicted gene, 23412
Tssr42291 4 83316278 to 83316282 4 - TSS region transcription start site region 42291
Cpgi14405 4 83323362 to 83324621 1259 CpG island CpG island 14405
Tssr42292 4 83324135 to 83324205 70 - TSS region transcription start site region 42292
Tssr42293 4 83324254 to 83324269 15 - TSS region transcription start site region 42293
Gm42306 4 83324418 to 83330554 6136 + lncRNA gene predicted gene, 42306
Tssr37690 4 83342247 to 83342264 17 + TSS region transcription start site region 37690
D4Mit152 4 83357535 to 83357676 141 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 152
Gm11413 4 83378317 to 83390668 12351 - antisense lncRNA gene predicted gene 11413
Gm11184 4 83383064 to 83392205 9141 + lincRNA gene predicted gene 11184
Tssr42294 4 83389983 to 83390020 37 - TSS region transcription start site region 42294
Cpgi14406 4 83417274 to 83418233 959 CpG island CpG island 14406
Tssr42295 4 83417553 to 83417577 24 - TSS region transcription start site region 42295
Tssr37691 4 83417715 to 83417758 43 + TSS region transcription start site region 37691
Snapc3 4 83417724 to 83467676 49952 + protein coding gene small nuclear RNA activating complex, polypeptide 3
Tssr37692 4 83435088 to 83435096 8 + TSS region transcription start site region 37692
Psip1 4 83455680 to 83486459 30779 - protein coding gene PC4 and SFRS1 interacting protein 1
Tssr42296 4 83462174 to 83462183 9 - TSS region transcription start site region 42296
Tssr1216 4 83465040 to 83465081 41 + TSS region transcription start site region 1216
Tssr1217 4 83465098 to 83465116 18 + TSS region transcription start site region 1217
Tssr42297 4 83467209 to 83467218 9 - TSS region transcription start site region 42297
Tssr42298 4 83468632 to 83468652 20 - TSS region transcription start site region 42298
A930007D18Rik 4 83471742 to 83473017 1275 unclassified gene RIKEN cDNA A930007D18 gene
Cpgi14407 4 83485652 to 83486942 1290 CpG island CpG island 14407
Tssr42299 4 83485786 to 83485824 38 - TSS region transcription start site region 42299
Tssr42300 4 83485845 to 83485890 45 - TSS region transcription start site region 42300
Tssr42301 4 83485914 to 83485934 20 - TSS region transcription start site region 42301
Tssr42302 4 83486241 to 83486276 35 - TSS region transcription start site region 42302
Tssr42303 4 83486391 to 83486402 11 - TSS region transcription start site region 42303
Tssr42304 4 83486415 to 83486439 24 - TSS region transcription start site region 42304
Tssr42305 4 83486457 to 83486478 21 - TSS region transcription start site region 42305
Gm11414 4 83500499 to 83500761 262 - pseudogene predicted gene 11414
Gm10154 4 83505185 to 83505538 353 - pseudogene predicted gene 10154
Gm42308 4 83508280 to 83511290 3010 - lncRNA gene predicted gene, 42308
D4Mit185 4 83508596 to 83508700 104 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 185
Cpgi14408 4 83524995 to 83526029 1034 CpG island CpG island 14408
Tssr42306 4 83525280 to 83525322 42 - TSS region transcription start site region 42306
Tssr37693 4 83525540 to 83525616 76 + TSS region transcription start site region 37693
Ccdc171 4 83525545 to 83864670 339125 + protein coding gene coiled-coil domain containing 171
Tssr37694 4 83525617 to 83525629 12 + TSS region transcription start site region 37694
Gm25899 4 83527628 to 83527768 140 - snRNA gene predicted gene, 25899
Tssr1218 4 83527642 to 83527645 3 + TSS region transcription start site region 1218
Tssr42307 4 83527765 to 83527767 2 - TSS region transcription start site region 42307
Tssr37695 4 83597278 to 83597287 9 + TSS region transcription start site region 37695
Gm27046 4 83597303 to 83597765 462 + pseudogene predicted gene, 27046
Gm18687 4 83611016 to 83612219 1203 - pseudogene predicted gene, 18687
Cbx3-ps3 4 83701084 to 83702036 952 + pseudogene chromobox 3, pseudogene 3
Gm26968 4 83743677 to 83744157 480 + sense intronic lncRNA gene predicted gene, 26968
Tssr37696 4 83773638 to 83773642 4 + TSS region transcription start site region 37696
Gm42309 4 83826128 to 83842051 15923 - lncRNA gene predicted gene, 42309
Tlsr4 4 83838893 to 83839021 128 QTL thymic lymphoma suppressor region 4
Habiir3 4 83838893 to 94405503 10566610 QTL hyperoxic acute lung injury imprinted region 3
D4Mit116 4 83838893 to 83839021 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 116
Gm11415 4 83884738 to 83888858 4120 - lincRNA gene predicted gene 11415
Mbsyd 4 83970208 to 83970351 143 QTL metabolic syndrome
D4Mit143 4 83970208 to 83970351 143 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 143
D4Mit328 4 84000697 to 84000820 123 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 328
6030471H07Rik 4 84042040 to 84044879 2839 - lincRNA gene RIKEN cDNA 6030471H07 gene
Gm33480 4 84072395 to 84081923 9528 - lncRNA gene predicted gene, 33480
Gm33410 4 84072618 to 84101430 28812 + lncRNA gene predicted gene, 33410
Tssr37697 4 84104825 to 84104829 4 + TSS region transcription start site region 37697
Gm12416 4 84104895 to 84105902 1007 + pseudogene predicted gene 12416
Gm42310 4 84110347 to 84113352 3005 + lncRNA gene predicted gene, 42310
Gm12414 4 84126350 to 84130289 3939 - lincRNA gene predicted gene 12414
Gm33597 4 84133256 to 84220733 87477 - lncRNA gene predicted gene, 33597