Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:82546751-83220148

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mmtg1 4 45658442 to 83180920 37522478 QTL modifier of mammary tumor growth 1
Gm11266 4 82540511 to 82547295 6784 + antisense lncRNA gene predicted gene 11266
Tssr42260 4 82561690 to 82561692 2 - TSS region transcription start site region 42260
Gm11267 4 82585048 to 82587319 2271 - sense intronic lncRNA gene predicted gene 11267
Tssr1214 4 82591220 to 82591223 3 + TSS region transcription start site region 1214
Gm42305 4 82605505 to 82606917 1412 + lncRNA gene predicted gene, 42305
n-THgtg10 4 82619623 to 82619694 71 - tRNA gene nuclear encoded tRNA histidine 10 (anticodon GTG)
D4Mit299 4 82638138 to 82638224 86 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 299
Gm11268 4 82642400 to 82642666 266 + pseudogene predicted gene 11268
Tssr42261 4 82687821 to 82687822 1 - TSS region transcription start site region 42261
Tssr37686 4 82692751 to 82692767 16 + TSS region transcription start site region 37686
Tssr37687 4 82692768 to 82692776 8 + TSS region transcription start site region 37687
Gm11269 4 82692805 to 82693711 906 + antisense lncRNA gene predicted gene 11269
Tssr42262 4 82705623 to 82705637 14 - TSS region transcription start site region 42262
Tssr42263 4 82705640 to 82705659 19 - TSS region transcription start site region 42263
Tssr42264 4 82705662 to 82705703 41 - TSS region transcription start site region 42264
Tssr42265 4 82705735 to 82705754 19 - TSS region transcription start site region 42265
Tssr42266 4 82705900 to 82705909 9 - TSS region transcription start site region 42266
Cpgi14402 4 82734791 to 82734982 191 CpG island CpG island 14402
Zdhhc21 4 82798738 to 82859944 61206 - protein coding gene zinc finger, DHHC domain containing 21
Cytrq1 4 82799849 to 82799849 0 QTL cytokine response QTL 1
Tssr42267 4 82800259 to 82800279 20 - TSS region transcription start site region 42267
Tssr42268 4 82850642 to 82850659 17 - TSS region transcription start site region 42268
Tssr42269 4 82850698 to 82850706 8 - TSS region transcription start site region 42269
Tssr42270 4 82850721 to 82850733 12 - TSS region transcription start site region 42270
Cpgi14403 4 82859124 to 82859986 862 CpG island CpG island 14403
Tssr42271 4 82859516 to 82859570 54 - TSS region transcription start site region 42271
Tssr42272 4 82859571 to 82859679 108 - TSS region transcription start site region 42272
Tssr42273 4 82859796 to 82859817 21 - TSS region transcription start site region 42273
Tssr42274 4 82859830 to 82859855 25 - TSS region transcription start site region 42274
Cer1 4 82881751 to 82885148 3397 - protein coding gene cerberus 1, DAN family BMP antagonist
Tssr1215 4 82882647 to 82882650 3 - TSS region transcription start site region 1215
Tssr42275 4 82882812 to 82882827 15 - TSS region transcription start site region 42275
Tssr42276 4 82885103 to 82885110 7 - TSS region transcription start site region 42276
Tssr42277 4 82885147 to 82885152 5 - TSS region transcription start site region 42277
D4Mit298 4 82888026 to 82888148 122 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 298
Frem1 4 82897920 to 83052339 154419 - protein coding gene Fras1 related extracellular matrix protein 1
Gm33260 4 82922313 to 82940309 17996 + lncRNA gene predicted gene, 33260
D4Mit79 4 82990787 to 82990923 136 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 79
Tssr42278 4 83003061 to 83003065 4 - TSS region transcription start site region 42278
Tssr42279 4 83021129 to 83021135 6 - TSS region transcription start site region 42279
Tssr37688 4 83023797 to 83023802 5 + TSS region transcription start site region 37688
4930441N18Rik 4 83023798 to 83024239 441 unclassified gene RIKEN cDNA 4930441N18 gene
Tssr42280 4 83052147 to 83052185 38 - TSS region transcription start site region 42280
Tssr42281 4 83052186 to 83052197 11 - TSS region transcription start site region 42281
Tssr42282 4 83052229 to 83052241 12 - TSS region transcription start site region 42282
Gm24884 4 83078511 to 83078629 118 + snoRNA gene predicted gene, 24884
Tssr37689 4 83121518 to 83121525 7 + TSS region transcription start site region 37689
Gm11248 4 83121541 to 83121741 200 + pseudogene predicted gene 11248
Gm46887 4 83178401 to 83186545 8144 - lncRNA gene predicted gene, 46887
D4Mit348 4 83180747 to 83180920 173 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 348
Gm11185 4 83193988 to 83194994 1006 + pseudogene predicted gene 11185
Tssr42283 4 83203776 to 83203777 1 - TSS region transcription start site region 42283