Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:81540679-83470690

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159 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mmtg1 4 45658442 to 83180920 37522478 QTL modifier of mammary tumor growth 1
Tssr42218 4 81572238 to 81572251 13 - TSS region transcription start site region 42218
Tssr37674 4 81628270 to 81628275 5 + TSS region transcription start site region 37674
D4Mit1003 4 81684487 to 81684615 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 1003
Gm11411 4 81696441 to 81697159 718 + pseudogene predicted gene 11411
Gm11412 4 81743146 to 81746701 3555 + lincRNA gene predicted gene 11412
n-R5s187 4 81918513 to 81918623 110 + rRNA gene nuclear encoded rRNA 5S 187
Gm12914 4 81930478 to 81932374 1896 - lincRNA gene predicted gene 12914
Gm46886 4 81934162 to 81936148 1986 + lncRNA gene predicted gene, 46886
Tssr1212 4 81982043 to 81982085 42 + TSS region transcription start site region 1212
Gm11264 4 82033312 to 82065890 32578 - lincRNA gene predicted gene 11264
Gm22402 4 82061112 to 82061221 109 - miRNA gene predicted gene, 22402
Gm5860 4 82065431 to 82102808 37377 + lincRNA gene predicted gene 5860
Tssr37675 4 82065825 to 82065835 10 + TSS region transcription start site region 37675
Tssr37676 4 82065855 to 82065876 21 + TSS region transcription start site region 37676
Tssr37677 4 82065880 to 82065891 11 + TSS region transcription start site region 37677
Tssr42219 4 82065889 to 82065893 4 - TSS region transcription start site region 42219
Tssr37678 4 82065924 to 82065935 11 + TSS region transcription start site region 37678
D4Mit289 4 82141108 to 82141214 106 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 289
Nfib 4 82290173 to 82505779 215606 - protein coding gene nuclear factor I/B
Tssr42220 4 82291093 to 82291114 21 - TSS region transcription start site region 42220
Tssr42221 4 82293256 to 82293270 14 - TSS region transcription start site region 42221
Tssr42222 4 82293677 to 82293697 20 - TSS region transcription start site region 42222
Tssr42223 4 82293883 to 82293897 14 - TSS region transcription start site region 42223
Tssr42224 4 82294373 to 82294386 13 - TSS region transcription start site region 42224
Tssr42225 4 82294430 to 82294458 28 - TSS region transcription start site region 42225
Tssr42226 4 82294663 to 82294685 22 - TSS region transcription start site region 42226
Tssr42227 4 82294711 to 82294726 15 - TSS region transcription start site region 42227
Tssr42228 4 82294782 to 82294793 11 - TSS region transcription start site region 42228
Tssr42229 4 82294886 to 82294959 73 - TSS region transcription start site region 42229
Tssr42230 4 82295370 to 82295390 20 - TSS region transcription start site region 42230
Tssr42231 4 82295877 to 82295882 5 - TSS region transcription start site region 42231
Tssr42232 4 82296250 to 82296268 18 - TSS region transcription start site region 42232
Tssr42233 4 82296640 to 82296644 4 - TSS region transcription start site region 42233
Tssr42234 4 82296676 to 82296680 4 - TSS region transcription start site region 42234
Tssr42235 4 82314194 to 82314197 3 - TSS region transcription start site region 42235
D830012I16Rik 4 82315586 to 82319896 4310 unclassified gene RIKEN cDNA D830012I16 gene
Tssr37679 4 82315936 to 82315968 32 + TSS region transcription start site region 37679
Tssr42236 4 82362216 to 82362219 3 - TSS region transcription start site region 42236
Tssr1213 4 82373910 to 82373949 39 - TSS region transcription start site region 1213
Tssr42237 4 82374111 to 82374149 38 - TSS region transcription start site region 42237
Tssr42238 4 82386761 to 82386775 14 - TSS region transcription start site region 42238
Tssr42239 4 82422530 to 82422534 4 - TSS region transcription start site region 42239
n-R5s188 4 82439410 to 82439514 104 + rRNA gene nuclear encoded rRNA 5S 188
2310067E19Rik 4 82450058 to 82458093 8035 - unclassified gene RIKEN cDNA 2310067E19 gene
Tssr42240 4 82475066 to 82475070 4 - TSS region transcription start site region 42240
Tssr42241 4 82492817 to 82492851 34 - TSS region transcription start site region 42241
Tssr42242 4 82498389 to 82498401 12 - TSS region transcription start site region 42242
Tssr42243 4 82498422 to 82498433 11 - TSS region transcription start site region 42243
Tssr42244 4 82498518 to 82498535 17 - TSS region transcription start site region 42244
Tssr42245 4 82499292 to 82499325 33 - TSS region transcription start site region 42245
Tssr42246 4 82499328 to 82499355 27 - TSS region transcription start site region 42246
Cpgi14398 4 82504127 to 82507379 3252 CpG island CpG island 14398
Tssr42247 4 82504895 to 82504898 3 - TSS region transcription start site region 42247
Tssr42248 4 82505222 to 82505229 7 - TSS region transcription start site region 42248
Tssr42249 4 82505244 to 82505255 11 - TSS region transcription start site region 42249
Tssr42250 4 82505274 to 82505358 84 - TSS region transcription start site region 42250
Tssr42251 4 82505370 to 82505386 16 - TSS region transcription start site region 42251
Tssr42252 4 82505596 to 82505601 5 - TSS region transcription start site region 42252
Tssr42253 4 82505679 to 82505690 11 - TSS region transcription start site region 42253
Tssr42254 4 82505718 to 82505739 21 - TSS region transcription start site region 42254
Tssr42255 4 82505749 to 82505802 53 - TSS region transcription start site region 42255
Tssr42256 4 82505803 to 82505806 3 - TSS region transcription start site region 42256
Tssr42257 4 82505833 to 82505838 5 - TSS region transcription start site region 42257
Tssr42258 4 82505858 to 82505867 9 - TSS region transcription start site region 42258
Tssr37680 4 82505923 to 82505954 31 + TSS region transcription start site region 37680
Tssr42259 4 82506432 to 82506474 42 - TSS region transcription start site region 42259
Tssr37681 4 82507946 to 82508000 54 + TSS region transcription start site region 37681
Tssr37682 4 82508006 to 82508019 13 + TSS region transcription start site region 37682
Tssr37683 4 82509584 to 82509592 8 + TSS region transcription start site region 37683
Cpgi14399 4 82512712 to 82513633 921 CpG island CpG island 14399
Tssr37684 4 82513366 to 82513408 42 + TSS region transcription start site region 37684
Cpgi14400 4 82536561 to 82537169 608 CpG island CpG island 14400
Cpgi14401 4 82537439 to 82537626 187 CpG island CpG island 14401
Tssr37685 4 82537643 to 82537649 6 + TSS region transcription start site region 37685
Gm11266 4 82540511 to 82547295 6784 + antisense lncRNA gene predicted gene 11266
Tssr42260 4 82561690 to 82561692 2 - TSS region transcription start site region 42260
Gm11267 4 82585048 to 82587319 2271 - sense intronic lncRNA gene predicted gene 11267
Tssr1214 4 82591220 to 82591223 3 + TSS region transcription start site region 1214
Gm42305 4 82605505 to 82606917 1412 + lncRNA gene predicted gene, 42305
n-THgtg10 4 82619623 to 82619694 71 - tRNA gene nuclear encoded tRNA histidine 10 (anticodon GTG)
D4Mit299 4 82638138 to 82638224 86 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 299
Gm11268 4 82642400 to 82642666 266 + pseudogene predicted gene 11268
Tssr42261 4 82687821 to 82687822 1 - TSS region transcription start site region 42261
Tssr37686 4 82692751 to 82692767 16 + TSS region transcription start site region 37686
Tssr37687 4 82692768 to 82692776 8 + TSS region transcription start site region 37687
Gm11269 4 82692805 to 82693711 906 + antisense lncRNA gene predicted gene 11269
Tssr42262 4 82705623 to 82705637 14 - TSS region transcription start site region 42262
Tssr42263 4 82705640 to 82705659 19 - TSS region transcription start site region 42263
Tssr42264 4 82705662 to 82705703 41 - TSS region transcription start site region 42264
Tssr42265 4 82705735 to 82705754 19 - TSS region transcription start site region 42265
Tssr42266 4 82705900 to 82705909 9 - TSS region transcription start site region 42266
Cpgi14402 4 82734791 to 82734982 191 CpG island CpG island 14402
Zdhhc21 4 82798738 to 82859944 61206 - protein coding gene zinc finger, DHHC domain containing 21
Cytrq1 4 82799849 to 82799849 0 QTL cytokine response QTL 1
Tssr42267 4 82800259 to 82800279 20 - TSS region transcription start site region 42267
Tssr42268 4 82850642 to 82850659 17 - TSS region transcription start site region 42268
Tssr42269 4 82850698 to 82850706 8 - TSS region transcription start site region 42269
Tssr42270 4 82850721 to 82850733 12 - TSS region transcription start site region 42270
Cpgi14403 4 82859124 to 82859986 862 CpG island CpG island 14403
Tssr42271 4 82859516 to 82859570 54 - TSS region transcription start site region 42271
Tssr42272 4 82859571 to 82859679 108 - TSS region transcription start site region 42272
Tssr42273 4 82859796 to 82859817 21 - TSS region transcription start site region 42273
Tssr42274 4 82859830 to 82859855 25 - TSS region transcription start site region 42274
Cer1 4 82881751 to 82885148 3397 - protein coding gene cerberus 1, DAN family BMP antagonist
Tssr1215 4 82882647 to 82882650 3 - TSS region transcription start site region 1215
Tssr42275 4 82882812 to 82882827 15 - TSS region transcription start site region 42275
Tssr42276 4 82885103 to 82885110 7 - TSS region transcription start site region 42276
Tssr42277 4 82885147 to 82885152 5 - TSS region transcription start site region 42277
D4Mit298 4 82888026 to 82888148 122 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 298
Frem1 4 82897920 to 83052339 154419 - protein coding gene Fras1 related extracellular matrix protein 1
Gm33260 4 82922313 to 82940309 17996 + lncRNA gene predicted gene, 33260
D4Mit79 4 82990787 to 82990923 136 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 79
Tssr42278 4 83003061 to 83003065 4 - TSS region transcription start site region 42278
Tssr42279 4 83021129 to 83021135 6 - TSS region transcription start site region 42279
Tssr37688 4 83023797 to 83023802 5 + TSS region transcription start site region 37688
4930441N18Rik 4 83023798 to 83024239 441 unclassified gene RIKEN cDNA 4930441N18 gene
Tssr42280 4 83052147 to 83052185 38 - TSS region transcription start site region 42280
Tssr42281 4 83052186 to 83052197 11 - TSS region transcription start site region 42281
Tssr42282 4 83052229 to 83052241 12 - TSS region transcription start site region 42282
Gm24884 4 83078511 to 83078629 118 + snoRNA gene predicted gene, 24884
Tssr37689 4 83121518 to 83121525 7 + TSS region transcription start site region 37689
Gm11248 4 83121541 to 83121741 200 + pseudogene predicted gene 11248
Gm46887 4 83178401 to 83186545 8144 - lncRNA gene predicted gene, 46887
D4Mit348 4 83180747 to 83180920 173 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 348
Gm11185 4 83193988 to 83194994 1006 + pseudogene predicted gene 11185
Tssr42283 4 83203776 to 83203777 1 - TSS region transcription start site region 42283
Ttc39b 4 83220300 to 83324255 103955 - protein coding gene tetratricopeptide repeat domain 39B
Tssr42284 4 83233165 to 83233177 12 - TSS region transcription start site region 42284
Tssr42285 4 83256774 to 83256780 6 - TSS region transcription start site region 42285
Tssr42286 4 83266038 to 83266081 43 - TSS region transcription start site region 42286
Cpgi14404 4 83273643 to 83273835 192 CpG island CpG island 14404
Tssr42287 4 83273746 to 83273797 51 - TSS region transcription start site region 42287
Gm42307 4 83283094 to 83287822 4728 + lncRNA gene predicted gene, 42307
Tssr42288 4 83285125 to 83285138 13 - TSS region transcription start site region 42288
Tssr42289 4 83285141 to 83285169 28 - TSS region transcription start site region 42289
Tssr42290 4 83285171 to 83285214 43 - TSS region transcription start site region 42290
Gm23412 4 83285804 to 83285910 106 - snRNA gene predicted gene, 23412
Tssr42291 4 83316278 to 83316282 4 - TSS region transcription start site region 42291
Cpgi14405 4 83323362 to 83324621 1259 CpG island CpG island 14405
Tssr42292 4 83324135 to 83324205 70 - TSS region transcription start site region 42292
Tssr42293 4 83324254 to 83324269 15 - TSS region transcription start site region 42293
Gm42306 4 83324418 to 83330554 6136 + lncRNA gene predicted gene, 42306
Tssr37690 4 83342247 to 83342264 17 + TSS region transcription start site region 37690
D4Mit152 4 83357535 to 83357676 141 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 152
Gm11413 4 83378317 to 83390668 12351 - antisense lncRNA gene predicted gene 11413
Gm11184 4 83383064 to 83392205 9141 + lincRNA gene predicted gene 11184
Tssr42294 4 83389983 to 83390020 37 - TSS region transcription start site region 42294
Cpgi14406 4 83417274 to 83418233 959 CpG island CpG island 14406
Tssr42295 4 83417553 to 83417577 24 - TSS region transcription start site region 42295
Tssr37691 4 83417715 to 83417758 43 + TSS region transcription start site region 37691
Snapc3 4 83417724 to 83467676 49952 + protein coding gene small nuclear RNA activating complex, polypeptide 3
Tssr37692 4 83435088 to 83435096 8 + TSS region transcription start site region 37692
Psip1 4 83455680 to 83486459 30779 - protein coding gene PC4 and SFRS1 interacting protein 1
Tssr42296 4 83462174 to 83462183 9 - TSS region transcription start site region 42296
Tssr1216 4 83465040 to 83465081 41 + TSS region transcription start site region 1216
Tssr1217 4 83465098 to 83465116 18 + TSS region transcription start site region 1217
Tssr42297 4 83467209 to 83467218 9 - TSS region transcription start site region 42297
Tssr42298 4 83468632 to 83468652 20 - TSS region transcription start site region 42298