Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:80672333-82232341

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ps 4 43631935 to 80851736 37219801 heritable phenotypic marker polysyndactyly
Ccmp4 4 67182025 to 80851736 13669711 QTL cerebellar cAMP 4
Alcw2 4 75941237 to 81442815 5501578 QTL alcohol withdrawal 2
D4Mit81 4 80701289 to 80701448 159 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 81
Pfat1 4 80701289 to 80701448 159 QTL predicted fat percentage 1
Gm46885 4 80703650 to 80726133 22483 + lncRNA gene predicted gene, 46885
Gm42304 4 80740299 to 80744128 3829 + lncRNA gene predicted gene, 42304
Tssr37665 4 80834204 to 80834221 17 + TSS region transcription start site region 37665
Lyr 4 80834208 to 88850951 8016743 QTL lymphoma resistance
Tyrp1 4 80834208 to 80851736 17528 + protein coding gene tyrosinase-related protein 1
Tssr37666 4 80834286 to 80834295 9 + TSS region transcription start site region 37666
Tssr37667 4 80834298 to 80834313 15 + TSS region transcription start site region 37667
Tssr37668 4 80834330 to 80834355 25 + TSS region transcription start site region 37668
Tssr37669 4 80834363 to 80834376 13 + TSS region transcription start site region 37669
D4Mit174 4 80842723 to 80842854 131 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 174
Tssr37670 4 80910670 to 80910685 15 + TSS region transcription start site region 37670
Lurap1l 4 80910686 to 80954301 43615 + protein coding gene leucine rich adaptor protein 1-like
Tssr37671 4 80910844 to 80910859 15 + TSS region transcription start site region 37671
Cpgi14395 4 80910948 to 80912030 1082 CpG island CpG island 14395
2010003D24Rik 4 80914348 to 80914809 461 unclassified gene RIKEN cDNA 2010003D24 gene
9430051O21Rik 4 80917389 to 80918761 1372 unclassified gene RIKEN cDNA 9430051O21 gene
Tssr37672 4 80932141 to 80932145 4 + TSS region transcription start site region 37672
Gm27452 4 80967444 to 80967539 95 + miRNA gene predicted gene, 27452
Cpgi14396 4 81178730 to 81179014 284 CpG island CpG island 14396
Tsti1 4 81278500 to 81442815 164315 QTL tail suspension test immobility 1
Mpdz 4 81278500 to 81442815 164315 - protein coding gene multiple PDZ domain protein
Berr8 4 81304223 to 81304223 0 QTL berghei resistance locus 8
Gm25803 4 81338274 to 81338404 130 - snoRNA gene predicted gene, 25803
Tssr42214 4 81348722 to 81348736 14 - TSS region transcription start site region 42214
Tssr42215 4 81361463 to 81361500 37 - TSS region transcription start site region 42215
D4Mit173 4 81388780 to 81388878 98 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 173
D4Nds7 4 81388789 to 81388879 90 DNA segment DNA segment, Chr 4, Nuffield Department of Surgery 7
Cpgi14397 4 81442070 to 81443355 1285 CpG island CpG island 14397
Tssr37673 4 81442426 to 81442444 18 + TSS region transcription start site region 37673
Tssr42216 4 81442743 to 81442754 11 - TSS region transcription start site region 42216
Tssr42217 4 81442756 to 81442836 80 - TSS region transcription start site region 42217
Tssr1211 4 81452333 to 81452341 8 - TSS region transcription start site region 1211
Gm11765 4 81455943 to 81461732 5789 - pseudogene predicted gene 11765
Tssr42218 4 81572238 to 81572251 13 - TSS region transcription start site region 42218
Tssr37674 4 81628270 to 81628275 5 + TSS region transcription start site region 37674
D4Mit1003 4 81684487 to 81684615 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 1003
Gm11411 4 81696441 to 81697159 718 + pseudogene predicted gene 11411
Gm11412 4 81743146 to 81746701 3555 + lincRNA gene predicted gene 11412
n-R5s187 4 81918513 to 81918623 110 + rRNA gene nuclear encoded rRNA 5S 187
Gm12914 4 81930478 to 81932374 1896 - lincRNA gene predicted gene 12914
Gm46886 4 81934162 to 81936148 1986 + lncRNA gene predicted gene, 46886
Tssr1212 4 81982043 to 81982085 42 + TSS region transcription start site region 1212
Gm11264 4 82033312 to 82065890 32578 - lincRNA gene predicted gene 11264
Gm22402 4 82061112 to 82061221 109 - miRNA gene predicted gene, 22402
Gm5860 4 82065431 to 82102808 37377 + lincRNA gene predicted gene 5860
Tssr37675 4 82065825 to 82065835 10 + TSS region transcription start site region 37675
Tssr37676 4 82065855 to 82065876 21 + TSS region transcription start site region 37676
Tssr37677 4 82065880 to 82065891 11 + TSS region transcription start site region 37677
Tssr42219 4 82065889 to 82065893 4 - TSS region transcription start site region 42219
Tssr37678 4 82065924 to 82065935 11 + TSS region transcription start site region 37678
D4Mit289 4 82141108 to 82141214 106 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 289