Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:80262333-82642341

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122 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ps 4 43631935 to 80851736 37219801 heritable phenotypic marker polysyndactyly
Ccmp4 4 67182025 to 80851736 13669711 QTL cerebellar cAMP 4
Alcw2 4 75941237 to 81442815 5501578 QTL alcohol withdrawal 2
Gm11406 4 80440398 to 80440881 483 + pseudogene predicted gene 11406
Gm32658 4 80509338 to 80630259 120921 - lncRNA gene predicted gene, 32658
D4Mit347 4 80671333 to 80671443 110 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 347
Pfat1 4 80701289 to 80701448 159 QTL predicted fat percentage 1
D4Mit81 4 80701289 to 80701448 159 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 81
Gm46885 4 80703650 to 80726133 22483 + lncRNA gene predicted gene, 46885
Gm42304 4 80740299 to 80744128 3829 + lncRNA gene predicted gene, 42304
Tssr37665 4 80834204 to 80834221 17 + TSS region transcription start site region 37665
Lyr 4 80834208 to 88850951 8016743 QTL lymphoma resistance
Tyrp1 4 80834208 to 80851736 17528 + protein coding gene tyrosinase-related protein 1
Tssr37666 4 80834286 to 80834295 9 + TSS region transcription start site region 37666
Tssr37667 4 80834298 to 80834313 15 + TSS region transcription start site region 37667
Tssr37668 4 80834330 to 80834355 25 + TSS region transcription start site region 37668
Tssr37669 4 80834363 to 80834376 13 + TSS region transcription start site region 37669
D4Mit174 4 80842723 to 80842854 131 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 174
Tssr37670 4 80910670 to 80910685 15 + TSS region transcription start site region 37670
Lurap1l 4 80910686 to 80954301 43615 + protein coding gene leucine rich adaptor protein 1-like
Tssr37671 4 80910844 to 80910859 15 + TSS region transcription start site region 37671
Cpgi14395 4 80910948 to 80912030 1082 CpG island CpG island 14395
2010003D24Rik 4 80914348 to 80914809 461 unclassified gene RIKEN cDNA 2010003D24 gene
9430051O21Rik 4 80917389 to 80918761 1372 unclassified gene RIKEN cDNA 9430051O21 gene
Tssr37672 4 80932141 to 80932145 4 + TSS region transcription start site region 37672
Gm27452 4 80967444 to 80967539 95 + miRNA gene predicted gene, 27452
Cpgi14396 4 81178730 to 81179014 284 CpG island CpG island 14396
Tsti1 4 81278500 to 81442815 164315 QTL tail suspension test immobility 1
Mpdz 4 81278500 to 81442815 164315 - protein coding gene multiple PDZ domain protein
Berr8 4 81304223 to 81304223 0 QTL berghei resistance locus 8
Gm25803 4 81338274 to 81338404 130 - snoRNA gene predicted gene, 25803
Tssr42214 4 81348722 to 81348736 14 - TSS region transcription start site region 42214
Tssr42215 4 81361463 to 81361500 37 - TSS region transcription start site region 42215
D4Mit173 4 81388780 to 81388878 98 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 173
D4Nds7 4 81388789 to 81388879 90 DNA segment DNA segment, Chr 4, Nuffield Department of Surgery 7
Cpgi14397 4 81442070 to 81443355 1285 CpG island CpG island 14397
Tssr37673 4 81442426 to 81442444 18 + TSS region transcription start site region 37673
Tssr42216 4 81442743 to 81442754 11 - TSS region transcription start site region 42216
Tssr42217 4 81442756 to 81442836 80 - TSS region transcription start site region 42217
Tssr1211 4 81452333 to 81452341 8 - TSS region transcription start site region 1211
Gm11765 4 81455943 to 81461732 5789 - pseudogene predicted gene 11765
Tssr42218 4 81572238 to 81572251 13 - TSS region transcription start site region 42218
Tssr37674 4 81628270 to 81628275 5 + TSS region transcription start site region 37674
D4Mit1003 4 81684487 to 81684615 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 1003
Gm11411 4 81696441 to 81697159 718 + pseudogene predicted gene 11411
Gm11412 4 81743146 to 81746701 3555 + lincRNA gene predicted gene 11412
n-R5s187 4 81918513 to 81918623 110 + rRNA gene nuclear encoded rRNA 5S 187
Gm12914 4 81930478 to 81932374 1896 - lincRNA gene predicted gene 12914
Gm46886 4 81934162 to 81936148 1986 + lncRNA gene predicted gene, 46886
Tssr1212 4 81982043 to 81982085 42 + TSS region transcription start site region 1212
Gm11264 4 82033312 to 82065890 32578 - lincRNA gene predicted gene 11264
Gm22402 4 82061112 to 82061221 109 - miRNA gene predicted gene, 22402
Gm5860 4 82065431 to 82102808 37377 + lincRNA gene predicted gene 5860
Tssr37675 4 82065825 to 82065835 10 + TSS region transcription start site region 37675
Tssr37676 4 82065855 to 82065876 21 + TSS region transcription start site region 37676
Tssr37677 4 82065880 to 82065891 11 + TSS region transcription start site region 37677
Tssr42219 4 82065889 to 82065893 4 - TSS region transcription start site region 42219
Tssr37678 4 82065924 to 82065935 11 + TSS region transcription start site region 37678
D4Mit289 4 82141108 to 82141214 106 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 289
Nfib 4 82290173 to 82505779 215606 - protein coding gene nuclear factor I/B
Tssr42220 4 82291093 to 82291114 21 - TSS region transcription start site region 42220
Tssr42221 4 82293256 to 82293270 14 - TSS region transcription start site region 42221
Tssr42222 4 82293677 to 82293697 20 - TSS region transcription start site region 42222
Tssr42223 4 82293883 to 82293897 14 - TSS region transcription start site region 42223
Tssr42224 4 82294373 to 82294386 13 - TSS region transcription start site region 42224
Tssr42225 4 82294430 to 82294458 28 - TSS region transcription start site region 42225
Tssr42226 4 82294663 to 82294685 22 - TSS region transcription start site region 42226
Tssr42227 4 82294711 to 82294726 15 - TSS region transcription start site region 42227
Tssr42228 4 82294782 to 82294793 11 - TSS region transcription start site region 42228
Tssr42229 4 82294886 to 82294959 73 - TSS region transcription start site region 42229
Tssr42230 4 82295370 to 82295390 20 - TSS region transcription start site region 42230
Tssr42231 4 82295877 to 82295882 5 - TSS region transcription start site region 42231
Tssr42232 4 82296250 to 82296268 18 - TSS region transcription start site region 42232
Tssr42233 4 82296640 to 82296644 4 - TSS region transcription start site region 42233
Tssr42234 4 82296676 to 82296680 4 - TSS region transcription start site region 42234
Tssr42235 4 82314194 to 82314197 3 - TSS region transcription start site region 42235
D830012I16Rik 4 82315586 to 82319896 4310 unclassified gene RIKEN cDNA D830012I16 gene
Tssr37679 4 82315936 to 82315968 32 + TSS region transcription start site region 37679
Tssr42236 4 82362216 to 82362219 3 - TSS region transcription start site region 42236
Tssr1213 4 82373910 to 82373949 39 - TSS region transcription start site region 1213
Tssr42237 4 82374111 to 82374149 38 - TSS region transcription start site region 42237
Tssr42238 4 82386761 to 82386775 14 - TSS region transcription start site region 42238
Tssr42239 4 82422530 to 82422534 4 - TSS region transcription start site region 42239
n-R5s188 4 82439410 to 82439514 104 + rRNA gene nuclear encoded rRNA 5S 188
2310067E19Rik 4 82450058 to 82458093 8035 - unclassified gene RIKEN cDNA 2310067E19 gene
Tssr42240 4 82475066 to 82475070 4 - TSS region transcription start site region 42240
Tssr42241 4 82492817 to 82492851 34 - TSS region transcription start site region 42241
Tssr42242 4 82498389 to 82498401 12 - TSS region transcription start site region 42242
Tssr42243 4 82498422 to 82498433 11 - TSS region transcription start site region 42243
Tssr42244 4 82498518 to 82498535 17 - TSS region transcription start site region 42244
Tssr42245 4 82499292 to 82499325 33 - TSS region transcription start site region 42245
Tssr42246 4 82499328 to 82499355 27 - TSS region transcription start site region 42246
Cpgi14398 4 82504127 to 82507379 3252 CpG island CpG island 14398
Tssr42247 4 82504895 to 82504898 3 - TSS region transcription start site region 42247
Tssr42248 4 82505222 to 82505229 7 - TSS region transcription start site region 42248
Tssr42249 4 82505244 to 82505255 11 - TSS region transcription start site region 42249
Tssr42250 4 82505274 to 82505358 84 - TSS region transcription start site region 42250
Tssr42251 4 82505370 to 82505386 16 - TSS region transcription start site region 42251
Tssr42252 4 82505596 to 82505601 5 - TSS region transcription start site region 42252
Tssr42253 4 82505679 to 82505690 11 - TSS region transcription start site region 42253
Tssr42254 4 82505718 to 82505739 21 - TSS region transcription start site region 42254
Tssr42255 4 82505749 to 82505802 53 - TSS region transcription start site region 42255
Tssr42256 4 82505803 to 82505806 3 - TSS region transcription start site region 42256
Tssr42257 4 82505833 to 82505838 5 - TSS region transcription start site region 42257
Tssr42258 4 82505858 to 82505867 9 - TSS region transcription start site region 42258
Tssr37680 4 82505923 to 82505954 31 + TSS region transcription start site region 37680
Tssr42259 4 82506432 to 82506474 42 - TSS region transcription start site region 42259
Tssr37681 4 82507946 to 82508000 54 + TSS region transcription start site region 37681
Tssr37682 4 82508006 to 82508019 13 + TSS region transcription start site region 37682
Tssr37683 4 82509584 to 82509592 8 + TSS region transcription start site region 37683
Cpgi14399 4 82512712 to 82513633 921 CpG island CpG island 14399
Tssr37684 4 82513366 to 82513408 42 + TSS region transcription start site region 37684
Cpgi14400 4 82536561 to 82537169 608 CpG island CpG island 14400
Cpgi14401 4 82537439 to 82537626 187 CpG island CpG island 14401
Tssr37685 4 82537643 to 82537649 6 + TSS region transcription start site region 37685
Gm11266 4 82540511 to 82547295 6784 + antisense lncRNA gene predicted gene 11266
Tssr42260 4 82561690 to 82561692 2 - TSS region transcription start site region 42260
Gm11267 4 82585048 to 82587319 2271 - sense intronic lncRNA gene predicted gene 11267
Tssr1214 4 82591220 to 82591223 3 + TSS region transcription start site region 1214
Gm42305 4 82605505 to 82606917 1412 + lncRNA gene predicted gene, 42305
n-THgtg10 4 82619623 to 82619694 71 - tRNA gene nuclear encoded tRNA histidine 10 (anticodon GTG)
D4Mit299 4 82638138 to 82638224 86 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 299