Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:7596894-8737353

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm33752 4 7581585 to 7648909 67324 - lncRNA gene predicted gene, 33752
Tssr36408 4 7669955 to 7669958 3 + TSS region transcription start site region 36408
Tssr40879 4 7687356 to 7687365 9 - TSS region transcription start site region 40879
Gm11795 4 7759670 to 7763930 4260 + lincRNA gene predicted gene 11795
Gm11794 4 7763264 to 7763500 236 - pseudogene predicted gene 11794
Gm23860 4 7820916 to 7821047 131 + snoRNA gene predicted gene, 23860
Tssr40880 4 7898001 to 7898018 17 - TSS region transcription start site region 40880
Tssr40881 4 7912031 to 7912042 11 - TSS region transcription start site region 40881
Tssr40882 4 7912057 to 7912071 14 - TSS region transcription start site region 40882
Gm11800 4 8118620 to 8119736 1116 + pseudogene predicted gene 11800
Tssr40883 4 8142818 to 8142821 3 - TSS region transcription start site region 40883
Car8 4 8143362 to 8239041 95679 - protein coding gene carbonic anhydrase 8
Gm11799 4 8166894 to 8167353 459 - pseudogene predicted gene 11799
Gm25355 4 8235582 to 8235682 100 + miRNA gene predicted gene, 25355
Tssr40884 4 8238091 to 8238102 11 - TSS region transcription start site region 40884
Cpgi14004 4 8238642 to 8239282 640 CpG island CpG island 14004
Tssr40885 4 8239034 to 8239047 13 - TSS region transcription start site region 40885
D4Mit235 4 8328955 to 8329070 115 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 235
D4Mit235.1 4 8329044 to 8329159 115 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 235.1
Gm42252 4 8374934 to 8419717 44783 - lncRNA gene predicted gene, 42252
D4Mit104 4 8426721 to 8426963 242 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 104
Whl 4 8426721 to 9574055 1147334 heritable phenotypic marker wheels
D4Mit104.1 4 8426747 to 8426860 113 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 104.1
Gm37386 4 8438522 to 8454247 15725 - unclassified gene predicted gene, 37386
Gm11810 4 8456166 to 8456498 332 - pseudogene predicted gene 11810
Tssr40886 4 8456557 to 8456558 1 - TSS region transcription start site region 40886
Tssr36409 4 8461427 to 8461461 34 + TSS region transcription start site region 36409
Gm18098 4 8461492 to 8467480 5988 + pseudogene predicted gene, 18098
Cpgi14005 4 8535445 to 8536494 1049 CpG island CpG island 14005
Rab2a 4 8535587 to 8607702 72115 + protein coding gene RAB2A, member RAS oncogene family
Tssr36410 4 8535604 to 8535717 113 + TSS region transcription start site region 36410
Tssr36411 4 8535729 to 8535738 9 + TSS region transcription start site region 36411
Tssr36412 4 8535818 to 8535851 33 + TSS region transcription start site region 36412
Tssr36413 4 8553747 to 8553751 4 + TSS region transcription start site region 36413
D130047N11Rik 4 8582775 to 8586326 3551 unclassified gene RIKEN cDNA D130047N11 gene
C530036F05Rik 4 8596992 to 8599711 2719 unclassified gene RIKEN cDNA C530036F05 gene
Tssr1114 4 8625733 to 8625735 2 + TSS region transcription start site region 1114
Gm42253 4 8635181 to 8646297 11116 - lncRNA gene predicted gene, 42253
Tssr40887 4 8642812 to 8642816 4 - TSS region transcription start site region 40887
Cpgi14006 4 8646904 to 8647795 891 CpG island CpG island 14006
Gm8273 4 8646963 to 8649081 2118 - unclassified gene predicted gene 8273
Cpgi14007 4 8648083 to 8648583 500 CpG island CpG island 14007
Tssr40888 4 8648438 to 8648459 21 - TSS region transcription start site region 40888
Gm11809 4 8672636 to 8673582 946 - pseudogene predicted gene 11809
Tssr40889 4 8673720 to 8673729 9 - TSS region transcription start site region 40889
Cpgi14008 4 8689636 to 8692377 2741 CpG island CpG island 14008
Tssr36414 4 8690399 to 8690453 54 + TSS region transcription start site region 36414
Chd7 4 8690406 to 8867659 177253 + protein coding gene chromodomain helicase DNA binding protein 7
Tssr36415 4 8690537 to 8690583 46 + TSS region transcription start site region 36415
Tssr36416 4 8691303 to 8691380 77 + TSS region transcription start site region 36416
Tssr36417 4 8711764 to 8711767 3 + TSS region transcription start site region 36417
Gm46841 4 8720972 to 8731950 10978 + protein coding gene predicted gene, 46841
Tssr36418 4 8731997 to 8732000 3 + TSS region transcription start site region 36418
Tssr36419 4 8735931 to 8735942 11 + TSS region transcription start site region 36419
Tssr36420 4 8735946 to 8735963 17 + TSS region transcription start site region 36420
Tssr36421 4 8735969 to 8736085 116 + TSS region transcription start site region 36421
Tssr1115 4 8736088 to 8736099 11 + TSS region transcription start site region 1115