Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:75791237-81592815

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168 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ps 4 43631935 to 80851736 37219801 heritable phenotypic marker polysyndactyly
nmf111 4 53550839 to 79603773 26052934 heritable phenotypic marker neuroscience mutagenesis facility, 111
Ccmp4 4 67182025 to 80851736 13669711 QTL cerebellar cAMP 4
Gm11256 4 75854603 to 75855394 791 + pseudogene predicted gene 11256
Gm11241 4 75902263 to 75903155 892 - pseudogene predicted gene 11241
Alcw2 4 75941237 to 81442815 5501578 QTL alcohol withdrawal 2
Ptprd 4 75941237 to 78211895 2270658 - protein coding gene protein tyrosine phosphatase, receptor type, D
Tssr42151 4 75982765 to 75982788 23 - TSS region transcription start site region 42151
Tssr42152 4 76102844 to 76102849 5 - TSS region transcription start site region 42152
Tssr42153 4 76104356 to 76104368 12 - TSS region transcription start site region 42153
Obq26 4 76129014 to 76129014 0 QTL obesity QTL 26
Tssr42154 4 76142075 to 76142086 11 - TSS region transcription start site region 42154
A230006I23Rik 4 76192512 to 76196633 4121 unclassified gene RIKEN cDNA A230006I23 gene
Tssr42155 4 76222559 to 76222566 7 - TSS region transcription start site region 42155
Tssr42156 4 76332465 to 76332467 2 - TSS region transcription start site region 42156
Gm46893 4 76338163 to 76345386 7223 + lncRNA gene predicted gene, 46893
Tssr42157 4 76344162 to 76344221 59 - TSS region transcription start site region 42157
Tssr42158 4 76344227 to 76344250 23 - TSS region transcription start site region 42158
Tssr42159 4 76358231 to 76358234 3 - TSS region transcription start site region 42159
Gm11252 4 76393154 to 76394092 938 + pseudogene predicted gene 11252
Tssr42160 4 76435792 to 76435796 4 - TSS region transcription start site region 42160
Tssr42161 4 76435863 to 76435878 15 - TSS region transcription start site region 42161
Cpgi14391 4 76449328 to 76450773 1445 CpG island CpG island 14391
Tssr42162 4 76449768 to 76449785 17 - TSS region transcription start site region 42162
Tssr42163 4 76450478 to 76450496 18 - TSS region transcription start site region 42163
Tssr42164 4 76450590 to 76450615 25 - TSS region transcription start site region 42164
Tssr37647 4 76450884 to 76450911 27 + TSS region transcription start site region 37647
Gm42303 4 76451231 to 76490113 38882 + antisense lncRNA gene predicted gene, 42303
Tssr37648 4 76451453 to 76451463 10 + TSS region transcription start site region 37648
Tssr42165 4 76487356 to 76487367 11 - TSS region transcription start site region 42165
Tssr42166 4 76536411 to 76536415 4 - TSS region transcription start site region 42166
Tssr42167 4 76557037 to 76557040 3 - TSS region transcription start site region 42167
Tssr42168 4 76559047 to 76559071 24 - TSS region transcription start site region 42168
Tssr42169 4 76570347 to 76570351 4 - TSS region transcription start site region 42169
Gm11242 4 76692240 to 76694632 2392 + pseudogene predicted gene 11242
Tssr42170 4 76748228 to 76748244 16 - TSS region transcription start site region 42170
Gm42302 4 76791191 to 76813718 22527 + lncRNA gene predicted gene, 42302
Gm11243 4 76793729 to 76794122 393 + pseudogene predicted gene 11243
Tssr42171 4 76800675 to 76800681 6 - TSS region transcription start site region 42171
Gm11244 4 76811555 to 76811791 236 - pseudogene predicted gene 11244
Gm11245 4 76837779 to 76838815 1036 + pseudogene predicted gene 11245
Tssr42172 4 76854316 to 76854320 4 - TSS region transcription start site region 42172
Tssr42173 4 76854483 to 76854485 2 - TSS region transcription start site region 42173
Tssr1207 4 76864180 to 76864186 6 - TSS region transcription start site region 1207
Tssr42174 4 76877573 to 76877576 3 - TSS region transcription start site region 42174
Tssr42175 4 76914706 to 76914755 49 - TSS region transcription start site region 42175
Gm11246 4 76927311 to 76927655 344 + pseudogene predicted gene 11246
Gm23159 4 76958422 to 76958498 76 - miRNA gene predicted gene, 23159
Tssr42176 4 76959112 to 76959135 23 - TSS region transcription start site region 42176
Tssr37649 4 76995707 to 76995709 2 + TSS region transcription start site region 37649
Tssr42177 4 77137830 to 77137831 1 - TSS region transcription start site region 42177
Tssr42178 4 77151961 to 77151974 13 - TSS region transcription start site region 42178
Tssr42179 4 77154605 to 77154618 13 - TSS region transcription start site region 42179
Tssr42180 4 77154741 to 77154750 9 - TSS region transcription start site region 42180
Tssr42181 4 77168748 to 77168783 35 - TSS region transcription start site region 42181
Tssr42182 4 77168822 to 77168836 14 - TSS region transcription start site region 42182
D4Mit84 4 77227040 to 77227187 147 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 84
Cd4ts2 4 77227040 to 77227187 147 QTL CD4 T cell subset 2
Synch2 4 77227040 to 77227187 147 QTL synechia 2
Tssr1208 4 77310727 to 77310732 5 + TSS region transcription start site region 1208
Gm38646 4 77310822 to 77314607 3785 + lncRNA gene predicted gene, 38646
Tssr42183 4 77426986 to 77426988 2 - TSS region transcription start site region 42183
Tssr42184 4 77454109 to 77454120 11 - TSS region transcription start site region 42184
Tssr42185 4 77454176 to 77454184 8 - TSS region transcription start site region 42185
Tssr42186 4 77525962 to 77525966 4 - TSS region transcription start site region 42186
Tssr42187 4 77701073 to 77701100 27 - TSS region transcription start site region 42187
Tssr42188 4 77764375 to 77764379 4 - TSS region transcription start site region 42188
Tssr42189 4 77775328 to 77775333 5 - TSS region transcription start site region 42189
Tssr42190 4 77784751 to 77784777 26 - TSS region transcription start site region 42190
Tssr42191 4 77787163 to 77787178 15 - TSS region transcription start site region 42191
Tssr42192 4 77788567 to 77788571 4 - TSS region transcription start site region 42192
Tssr42193 4 77822917 to 77822919 2 - TSS region transcription start site region 42193
Tssr42194 4 77823564 to 77823567 3 - TSS region transcription start site region 42194
Tssr42195 4 77826246 to 77826260 14 - TSS region transcription start site region 42195
Tssr42196 4 77856776 to 77856782 6 - TSS region transcription start site region 42196
Tssr42197 4 77891698 to 77891699 1 - TSS region transcription start site region 42197
Tssr42198 4 77893397 to 77893401 4 - TSS region transcription start site region 42198
Tssr42199 4 77905018 to 77905031 13 - TSS region transcription start site region 42199
Tssr42200 4 77916024 to 77916048 24 - TSS region transcription start site region 42200
Tssr42201 4 78003583 to 78003586 3 - TSS region transcription start site region 42201
Fkbp1a-ps4 4 78011434 to 78012670 1236 - pseudogene FK506 binding protein 1a, pseudogene 4
Tssr42202 4 78043811 to 78043820 9 - TSS region transcription start site region 42202
Tssr42203 4 78048896 to 78048907 11 - TSS region transcription start site region 42203
Tssr42204 4 78060413 to 78060418 5 - TSS region transcription start site region 42204
Tssr42205 4 78069484 to 78069496 12 - TSS region transcription start site region 42205
Tssr42206 4 78078434 to 78078454 20 - TSS region transcription start site region 42206
Tssr1209 4 78092208 to 78092212 4 - TSS region transcription start site region 1209
6430598H11Rik 4 78159885 to 78161534 1649 unclassified gene RIKEN cDNA 6430598H11 gene
Tssr42207 4 78180889 to 78180892 3 - TSS region transcription start site region 42207
Cpgi14392 4 78211277 to 78212593 1316 CpG island CpG island 14392
Tssr42208 4 78211685 to 78211696 11 - TSS region transcription start site region 42208
Tssr42209 4 78211732 to 78211754 22 - TSS region transcription start site region 42209
Tssr42210 4 78211758 to 78211790 32 - TSS region transcription start site region 42210
Tssr42211 4 78211827 to 78211889 62 - TSS region transcription start site region 42211
Tssr42212 4 78211949 to 78211999 50 - TSS region transcription start site region 42212
B230208B08Rik 4 78211955 to 78214177 2222 + unclassified non-coding RNA gene RIKEN cDNA B230208B08 gene
Tssr37650 4 78212014 to 78212049 35 + TSS region transcription start site region 37650
Gm11260 4 78234001 to 78234766 765 + pseudogene predicted gene 11260
Gm32545 4 78267867 to 78382708 114841 + lncRNA gene predicted gene, 32545
A430085M09Rik 4 78594047 to 78597484 3437 + lncRNA gene RIKEN cDNA A430085M09 gene
Gm11261 4 78659858 to 78661588 1730 - lincRNA gene predicted gene 11261
Gm22262 4 78670147 to 78670232 85 + unclassified non-coding RNA gene predicted gene, 22262
Gm11262 4 78697652 to 78698928 1276 + pseudogene predicted gene 11262
Tssr37651 4 78773690 to 78773724 34 + TSS region transcription start site region 37651
Tssr37652 4 78773814 to 78773846 32 + TSS region transcription start site region 37652
Tssr37653 4 78774041 to 78774054 13 + TSS region transcription start site region 37653
Gm25836 4 79244587 to 79244709 122 - snoRNA gene predicted gene, 25836
Tssr37654 4 79327663 to 79327665 2 + TSS region transcription start site region 37654
Gm11263 4 79327708 to 79328453 745 + pseudogene predicted gene 11263
D4Mit80 4 79603605 to 79603773 168 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 80
Tssr1210 4 79737196 to 79737200 4 - TSS region transcription start site region 1210
Tssr37655 4 79768769 to 79768770 1 + TSS region transcription start site region 37655
Gm11409 4 79874351 to 79874753 402 + pseudogene predicted gene 11409
D4Mit114 4 79973034 to 79973183 149 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 114
Gm11407 4 80002331 to 80003388 1057 + pseudogene predicted gene 11407
Cpgi14393 4 80002499 to 80002988 489 CpG island CpG island 14393
Tssr37656 4 80002655 to 80002669 14 + TSS region transcription start site region 37656
Tssr37657 4 80002702 to 80002752 50 + TSS region transcription start site region 37657
Tssr37658 4 80002822 to 80002843 21 + TSS region transcription start site region 37658
Tssr37659 4 80003164 to 80003172 8 + TSS region transcription start site region 37659
Gm11408 4 80003396 to 80003914 518 - pseudogene predicted gene 11408
Tssr37660 4 80003426 to 80003460 34 + TSS region transcription start site region 37660
Tssr42213 4 80003464 to 80003497 33 - TSS region transcription start site region 42213
Tssr37661 4 80003469 to 80003499 30 + TSS region transcription start site region 37661
Cpgi14394 4 80003912 to 80005057 1145 CpG island CpG island 14394
Gm11410 4 80003989 to 80005131 1142 + pseudogene predicted gene 11410
Tssr37662 4 80003990 to 80003992 2 + TSS region transcription start site region 37662
Tssr37663 4 80004453 to 80004482 29 + TSS region transcription start site region 37663
Tssr37664 4 80004511 to 80004519 8 + TSS region transcription start site region 37664
Gm11406 4 80440398 to 80440881 483 + pseudogene predicted gene 11406
Gm32658 4 80509338 to 80630259 120921 - lncRNA gene predicted gene, 32658
D4Mit347 4 80671333 to 80671443 110 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 347
Pfat1 4 80701289 to 80701448 159 QTL predicted fat percentage 1
D4Mit81 4 80701289 to 80701448 159 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 81
Gm46885 4 80703650 to 80726133 22483 + lncRNA gene predicted gene, 46885
Gm42304 4 80740299 to 80744128 3829 + lncRNA gene predicted gene, 42304
Tssr37665 4 80834204 to 80834221 17 + TSS region transcription start site region 37665
Tyrp1 4 80834208 to 80851736 17528 + protein coding gene tyrosinase-related protein 1
Lyr 4 80834208 to 88850951 8016743 QTL lymphoma resistance
Tssr37666 4 80834286 to 80834295 9 + TSS region transcription start site region 37666
Tssr37667 4 80834298 to 80834313 15 + TSS region transcription start site region 37667
Tssr37668 4 80834330 to 80834355 25 + TSS region transcription start site region 37668
Tssr37669 4 80834363 to 80834376 13 + TSS region transcription start site region 37669
D4Mit174 4 80842723 to 80842854 131 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 174
Tssr37670 4 80910670 to 80910685 15 + TSS region transcription start site region 37670
Lurap1l 4 80910686 to 80954301 43615 + protein coding gene leucine rich adaptor protein 1-like
Tssr37671 4 80910844 to 80910859 15 + TSS region transcription start site region 37671
Cpgi14395 4 80910948 to 80912030 1082 CpG island CpG island 14395
2010003D24Rik 4 80914348 to 80914809 461 unclassified gene RIKEN cDNA 2010003D24 gene
9430051O21Rik 4 80917389 to 80918761 1372 unclassified gene RIKEN cDNA 9430051O21 gene
Tssr37672 4 80932141 to 80932145 4 + TSS region transcription start site region 37672
Gm27452 4 80967444 to 80967539 95 + miRNA gene predicted gene, 27452
Cpgi14396 4 81178730 to 81179014 284 CpG island CpG island 14396
Mpdz 4 81278500 to 81442815 164315 - protein coding gene multiple PDZ domain protein
Tsti1 4 81278500 to 81442815 164315 QTL tail suspension test immobility 1
Berr8 4 81304223 to 81304223 0 QTL berghei resistance locus 8
Gm25803 4 81338274 to 81338404 130 - snoRNA gene predicted gene, 25803
Tssr42214 4 81348722 to 81348736 14 - TSS region transcription start site region 42214
Tssr42215 4 81361463 to 81361500 37 - TSS region transcription start site region 42215
D4Mit173 4 81388780 to 81388878 98 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 173
D4Nds7 4 81388789 to 81388879 90 DNA segment DNA segment, Chr 4, Nuffield Department of Surgery 7
Cpgi14397 4 81442070 to 81443355 1285 CpG island CpG island 14397
Tssr37673 4 81442426 to 81442444 18 + TSS region transcription start site region 37673
Tssr42216 4 81442743 to 81442754 11 - TSS region transcription start site region 42216
Tssr42217 4 81442756 to 81442836 80 - TSS region transcription start site region 42217
Tssr1211 4 81452333 to 81452341 8 - TSS region transcription start site region 1211
Gm11765 4 81455943 to 81461732 5789 - pseudogene predicted gene 11765
Tssr42218 4 81572238 to 81572251 13 - TSS region transcription start site region 42218