Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:75536237-78616895

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr37646 4 75549717 to 75549722 5 + TSS region transcription start site region 37646
Gm42300 4 75559631 to 75588755 29124 - lncRNA gene predicted gene, 42300
Gm42299 4 75567293 to 75583723 16430 - lncRNA gene predicted gene, 42299
Gm11256 4 75854603 to 75855394 791 + pseudogene predicted gene 11256
Gm11241 4 75902263 to 75903155 892 - pseudogene predicted gene 11241
Alcw2 4 75941237 to 81442815 5501578 QTL alcohol withdrawal 2
Ptprd 4 75941237 to 78211895 2270658 - protein coding gene protein tyrosine phosphatase, receptor type, D
Tssr42151 4 75982765 to 75982788 23 - TSS region transcription start site region 42151
Tssr42152 4 76102844 to 76102849 5 - TSS region transcription start site region 42152
Tssr42153 4 76104356 to 76104368 12 - TSS region transcription start site region 42153
Obq26 4 76129014 to 76129014 0 QTL obesity QTL 26
Tssr42154 4 76142075 to 76142086 11 - TSS region transcription start site region 42154
A230006I23Rik 4 76192512 to 76196633 4121 unclassified gene RIKEN cDNA A230006I23 gene
Tssr42155 4 76222559 to 76222566 7 - TSS region transcription start site region 42155
Tssr42156 4 76332465 to 76332467 2 - TSS region transcription start site region 42156
Gm46893 4 76338163 to 76345386 7223 + lncRNA gene predicted gene, 46893
Tssr42157 4 76344162 to 76344221 59 - TSS region transcription start site region 42157
Tssr42158 4 76344227 to 76344250 23 - TSS region transcription start site region 42158
Tssr42159 4 76358231 to 76358234 3 - TSS region transcription start site region 42159
Gm11252 4 76393154 to 76394092 938 + pseudogene predicted gene 11252
Tssr42160 4 76435792 to 76435796 4 - TSS region transcription start site region 42160
Tssr42161 4 76435863 to 76435878 15 - TSS region transcription start site region 42161
Cpgi14391 4 76449328 to 76450773 1445 CpG island CpG island 14391
Tssr42162 4 76449768 to 76449785 17 - TSS region transcription start site region 42162
Tssr42163 4 76450478 to 76450496 18 - TSS region transcription start site region 42163
Tssr42164 4 76450590 to 76450615 25 - TSS region transcription start site region 42164
Tssr37647 4 76450884 to 76450911 27 + TSS region transcription start site region 37647
Gm42303 4 76451231 to 76490113 38882 + antisense lncRNA gene predicted gene, 42303
Tssr37648 4 76451453 to 76451463 10 + TSS region transcription start site region 37648
Tssr42165 4 76487356 to 76487367 11 - TSS region transcription start site region 42165
Tssr42166 4 76536411 to 76536415 4 - TSS region transcription start site region 42166
Tssr42167 4 76557037 to 76557040 3 - TSS region transcription start site region 42167
Tssr42168 4 76559047 to 76559071 24 - TSS region transcription start site region 42168
Tssr42169 4 76570347 to 76570351 4 - TSS region transcription start site region 42169
Gm11242 4 76692240 to 76694632 2392 + pseudogene predicted gene 11242
Tssr42170 4 76748228 to 76748244 16 - TSS region transcription start site region 42170
Gm42302 4 76791191 to 76813718 22527 + lncRNA gene predicted gene, 42302
Gm11243 4 76793729 to 76794122 393 + pseudogene predicted gene 11243
Tssr42171 4 76800675 to 76800681 6 - TSS region transcription start site region 42171
Gm11244 4 76811555 to 76811791 236 - pseudogene predicted gene 11244
Gm11245 4 76837779 to 76838815 1036 + pseudogene predicted gene 11245
Tssr42172 4 76854316 to 76854320 4 - TSS region transcription start site region 42172
Tssr42173 4 76854483 to 76854485 2 - TSS region transcription start site region 42173
Tssr1207 4 76864180 to 76864186 6 - TSS region transcription start site region 1207
Tssr42174 4 76877573 to 76877576 3 - TSS region transcription start site region 42174
Tssr42175 4 76914706 to 76914755 49 - TSS region transcription start site region 42175
Gm11246 4 76927311 to 76927655 344 + pseudogene predicted gene 11246
Gm23159 4 76958422 to 76958498 76 - miRNA gene predicted gene, 23159
Tssr42176 4 76959112 to 76959135 23 - TSS region transcription start site region 42176
Tssr37649 4 76995707 to 76995709 2 + TSS region transcription start site region 37649
Tssr42177 4 77137830 to 77137831 1 - TSS region transcription start site region 42177
Tssr42178 4 77151961 to 77151974 13 - TSS region transcription start site region 42178
Tssr42179 4 77154605 to 77154618 13 - TSS region transcription start site region 42179
Tssr42180 4 77154741 to 77154750 9 - TSS region transcription start site region 42180
Tssr42181 4 77168748 to 77168783 35 - TSS region transcription start site region 42181
Tssr42182 4 77168822 to 77168836 14 - TSS region transcription start site region 42182
Cd4ts2 4 77227040 to 77227187 147 QTL CD4 T cell subset 2
D4Mit84 4 77227040 to 77227187 147 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 84
Synch2 4 77227040 to 77227187 147 QTL synechia 2
Tssr1208 4 77310727 to 77310732 5 + TSS region transcription start site region 1208
Gm38646 4 77310822 to 77314607 3785 + lncRNA gene predicted gene, 38646
Tssr42183 4 77426986 to 77426988 2 - TSS region transcription start site region 42183
Tssr42184 4 77454109 to 77454120 11 - TSS region transcription start site region 42184
Tssr42185 4 77454176 to 77454184 8 - TSS region transcription start site region 42185
Tssr42186 4 77525962 to 77525966 4 - TSS region transcription start site region 42186
Tssr42187 4 77701073 to 77701100 27 - TSS region transcription start site region 42187
Tssr42188 4 77764375 to 77764379 4 - TSS region transcription start site region 42188
Tssr42189 4 77775328 to 77775333 5 - TSS region transcription start site region 42189
Tssr42190 4 77784751 to 77784777 26 - TSS region transcription start site region 42190
Tssr42191 4 77787163 to 77787178 15 - TSS region transcription start site region 42191
Tssr42192 4 77788567 to 77788571 4 - TSS region transcription start site region 42192
Tssr42193 4 77822917 to 77822919 2 - TSS region transcription start site region 42193
Tssr42194 4 77823564 to 77823567 3 - TSS region transcription start site region 42194
Tssr42195 4 77826246 to 77826260 14 - TSS region transcription start site region 42195
Tssr42196 4 77856776 to 77856782 6 - TSS region transcription start site region 42196
Tssr42197 4 77891698 to 77891699 1 - TSS region transcription start site region 42197
Tssr42198 4 77893397 to 77893401 4 - TSS region transcription start site region 42198
Tssr42199 4 77905018 to 77905031 13 - TSS region transcription start site region 42199
Tssr42200 4 77916024 to 77916048 24 - TSS region transcription start site region 42200
Tssr42201 4 78003583 to 78003586 3 - TSS region transcription start site region 42201
Fkbp1a-ps4 4 78011434 to 78012670 1236 - pseudogene FK506 binding protein 1a, pseudogene 4
Tssr42202 4 78043811 to 78043820 9 - TSS region transcription start site region 42202
Tssr42203 4 78048896 to 78048907 11 - TSS region transcription start site region 42203
Tssr42204 4 78060413 to 78060418 5 - TSS region transcription start site region 42204
Tssr42205 4 78069484 to 78069496 12 - TSS region transcription start site region 42205
Tssr42206 4 78078434 to 78078454 20 - TSS region transcription start site region 42206
Tssr1209 4 78092208 to 78092212 4 - TSS region transcription start site region 1209
6430598H11Rik 4 78159885 to 78161534 1649 unclassified gene RIKEN cDNA 6430598H11 gene
Tssr42207 4 78180889 to 78180892 3 - TSS region transcription start site region 42207
Cpgi14392 4 78211277 to 78212593 1316 CpG island CpG island 14392
Tssr42208 4 78211685 to 78211696 11 - TSS region transcription start site region 42208
Tssr42209 4 78211732 to 78211754 22 - TSS region transcription start site region 42209
Tssr42210 4 78211758 to 78211790 32 - TSS region transcription start site region 42210
Tssr42211 4 78211827 to 78211889 62 - TSS region transcription start site region 42211
Tssr42212 4 78211949 to 78211999 50 - TSS region transcription start site region 42212
B230208B08Rik 4 78211955 to 78214177 2222 + unclassified non-coding RNA gene RIKEN cDNA B230208B08 gene
Tssr37650 4 78212014 to 78212049 35 + TSS region transcription start site region 37650
Gm11260 4 78234001 to 78234766 765 + pseudogene predicted gene 11260
Gm32545 4 78267867 to 78382708 114841 + lncRNA gene predicted gene, 32545
A430085M09Rik 4 78594047 to 78597484 3437 + lncRNA gene RIKEN cDNA A430085M09 gene