Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:72013354-75327396

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103 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tle1 4 72117142 to 72200919 83777 - protein coding gene transducin-like enhancer of split 1
Tssr42125 4 72137116 to 72137129 13 - TSS region transcription start site region 42125
Gm11250 4 72168768 to 72169449 681 + antisense lncRNA gene predicted gene 11250
Tssr42126 4 72169546 to 72169549 3 - TSS region transcription start site region 42126
Tssr42127 4 72169580 to 72169585 5 - TSS region transcription start site region 42127
Tssr42128 4 72193341 to 72193353 12 - TSS region transcription start site region 42128
Tssr42129 4 72198308 to 72198319 11 - TSS region transcription start site region 42129
Cpgi14385 4 72198985 to 72199320 335 CpG island CpG island 14385
Tssr42130 4 72199030 to 72199063 33 - TSS region transcription start site region 42130
Tssr42131 4 72199071 to 72199108 37 - TSS region transcription start site region 42131
Cpgi14386 4 72199638 to 72201789 2151 CpG island CpG island 14386
Tssr42132 4 72200739 to 72200746 7 - TSS region transcription start site region 42132
Tssr42133 4 72200833 to 72200928 95 - TSS region transcription start site region 42133
C630043F03Rik 4 72201244 to 72203930 2686 + lncRNA gene RIKEN cDNA C630043F03 gene
Tssr37630 4 72201258 to 72201365 107 + TSS region transcription start site region 37630
D4Mit85 4 72377575 to 72377715 140 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 85
D4Mit275 4 72514689 to 72514887 198 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 275
Gm11235 4 72542666 to 72542998 332 + pseudogene predicted gene 11235
D4Mit322 4 72600290 to 72600413 123 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 322
Aldoart1 4 72850583 to 72852634 2051 - protein coding gene aldolase 1 A, retrogene 1
Tssr42134 4 72852600 to 72852609 9 - TSS region transcription start site region 42134
Tssr42135 4 72852622 to 72852648 26 - TSS region transcription start site region 42135
Gm5287 4 72893781 to 72894378 597 + pseudogene predicted gene 5287
Tssr42136 4 72903712 to 72903716 4 - TSS region transcription start site region 42136
Gm25653 4 72906201 to 72906338 137 - snoRNA gene predicted gene, 25653
Gm11251 4 73029819 to 73036069 6250 + pseudogene predicted gene 11251
Gm25769 4 73114657 to 73114783 126 + snoRNA gene predicted gene, 25769
Gm11487 4 73401032 to 73405072 4040 - protein coding gene predicted gene 11487
Gm11486 4 73415301 to 73418690 3389 - pseudogene predicted gene 11486
Gm11485 4 73422148 to 73423319 1171 - pseudogene predicted gene 11485
Gm11488 4 73497615 to 73498477 862 - pseudogene predicted gene 11488
Gm24170 4 73589082 to 73589214 132 - snoRNA gene predicted gene, 24170
Gm38423 4 73605544 to 73611922 6378 + protein coding gene predicted gene, 38423
Gm11237 4 73622984 to 73627027 4043 + protein coding gene predicted gene 11237
Gm11236 4 73638121 to 73642161 4040 + protein coding gene predicted gene 11236
Gm11238 4 73650910 to 73657292 6382 + protein coding gene predicted gene 11238
Gm11239 4 73668354 to 73672396 4042 + protein coding gene predicted gene 11239
Gm428 4 73683516 to 73687558 4042 + protein coding gene predicted gene 428
Rasef 4 73714579 to 73790994 76415 - protein coding gene RAS and EF hand domain containing
Tssr42137 4 73718538 to 73718542 4 - TSS region transcription start site region 42137
Tssr42138 4 73771091 to 73771099 8 - TSS region transcription start site region 42138
Tssr42139 4 73771121 to 73771134 13 - TSS region transcription start site region 42139
Tssr42140 4 73771143 to 73771146 3 - TSS region transcription start site region 42140
Cpgi14387 4 73790339 to 73791355 1016 CpG island CpG island 14387
Tssr37631 4 73790901 to 73790904 3 + TSS region transcription start site region 37631
Tssr37632 4 73790916 to 73790940 24 + TSS region transcription start site region 37632
Tssr42141 4 73790993 to 73791053 60 - TSS region transcription start site region 42141
Tssr42142 4 73791138 to 73791153 15 - TSS region transcription start site region 42142
Gm11240 4 73791246 to 73798372 7126 + lncRNA gene predicted gene 11240
Gm13867 4 73864397 to 73865092 695 + pseudogene predicted gene 13867
Gm11758 4 73872219 to 73876266 4047 - protein coding gene predicted gene 11758
Gm11757 4 73887066 to 73891080 4014 - protein coding gene predicted gene 11757
Gm13871 4 73901906 to 73905921 4015 - protein coding gene predicted gene 13871
Gm11756 4 73916727 to 73920716 3989 - protein coding gene predicted gene 11756
2310002L09Rik 4 73939371 to 73950846 11475 - protein coding gene RIKEN cDNA 2310002L09 gene
Tssr42143 4 73950498 to 73950515 17 - TSS region transcription start site region 42143
Tssr42144 4 73950779 to 73950790 11 - TSS region transcription start site region 42144
Tssr42145 4 73950814 to 73950833 19 - TSS region transcription start site region 42145
Tssr42146 4 73950834 to 73950853 19 - TSS region transcription start site region 42146
Cpgi14388 4 74013260 to 74014244 984 CpG island CpG island 14388
Tssr37633 4 74013594 to 74013674 80 + TSS region transcription start site region 37633
Frmd3 4 74013603 to 74202214 188611 + protein coding gene FERM domain containing 3
Tssr1205 4 74043433 to 74043435 2 - TSS region transcription start site region 1205
Gm11760 4 74044388 to 74045183 795 + pseudogene predicted gene 11760
D4Mit142 4 74219337 to 74219454 117 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 142
Gm11405 4 74228197 to 74229749 1552 + pseudogene predicted gene 11405
Tssr37634 4 74242468 to 74242481 13 + TSS region transcription start site region 37634
Kdm4c 4 74242497 to 74405860 163363 + protein coding gene lysine (K)-specific demethylase 4C
A230083N12Rik 4 74250324 to 74251714 1390 - antisense lncRNA gene RIKEN cDNA A230083N12 gene
Cpgi14389 4 74251367 to 74252772 1405 CpG island CpG island 14389
Tssr42147 4 74251741 to 74251758 17 - TSS region transcription start site region 42147
Tssr42148 4 74251774 to 74251788 14 - TSS region transcription start site region 42148
Tssr37635 4 74251840 to 74251861 21 + TSS region transcription start site region 37635
Tssr37636 4 74251878 to 74251891 13 + TSS region transcription start site region 37636
Tssr37637 4 74251928 to 74251990 62 + TSS region transcription start site region 37637
Tssr37638 4 74251992 to 74252009 17 + TSS region transcription start site region 37638
Tssr37639 4 74252024 to 74252056 32 + TSS region transcription start site region 37639
Tssr37640 4 74258801 to 74258810 9 + TSS region transcription start site region 37640
Tssr37641 4 74259645 to 74259662 17 + TSS region transcription start site region 37641
Tssr37642 4 74265190 to 74265193 3 + TSS region transcription start site region 37642
Tssr37643 4 74360084 to 74360086 2 + TSS region transcription start site region 37643
2700003L17Rik 4 74364701 to 74365013 312 unclassified gene RIKEN cDNA 2700003L17 gene
Tssr37644 4 74384106 to 74384114 8 + TSS region transcription start site region 37644
D4Mit141 4 74512422 to 74512568 146 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 141
Tssr42149 4 74586374 to 74586376 2 - TSS region transcription start site region 42149
Gm26379 4 74635219 to 74635350 131 + snoRNA gene predicted gene, 26379
Gm11254 4 74663683 to 74664335 652 + pseudogene predicted gene 11254
Gm11258 4 74688107 to 74689324 1217 - pseudogene predicted gene 11258
D4Mit296 4 74781990 to 74782088 98 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 296
D4Mit86 4 74786158 to 74786303 145 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 86
Tssr1206 4 74826207 to 74826209 2 + TSS region transcription start site region 1206
Gm18744 4 74903963 to 74904918 955 - pseudogene predicted gene, 18744
Gm46862 4 75068013 to 75071966 3953 + pseudogene predicted gene, 46862
Gm11253 4 75081500 to 75081700 200 - pseudogene predicted gene 11253
Gm11257 4 75128712 to 75129026 314 + pseudogene predicted gene 11257
Gm12912 4 75147609 to 75148989 1380 + pseudogene predicted gene 12912
Dmac1 4 75277354 to 75278286 932 - protein coding gene distal membrane arm assembly complex 1
Cpgi14390 4 75277949 to 75278398 449 CpG island CpG island 14390
Tssr42150 4 75278246 to 75278338 92 - TSS region transcription start site region 42150
Tssr37645 4 75278348 to 75278360 12 + TSS region transcription start site region 37645
Gm22864 4 75280626 to 75280755 129 - snoRNA gene predicted gene, 22864
Gm11255 4 75324501 to 75325677 1176 + pseudogene predicted gene 11255
Anxty 4 128115487 to 74219337 -53896150 QTL anxiety