Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:70220738-72521196

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdk5rap2 4 70216855 to 70410435 193580 - protein coding gene CDK5 regulatory subunit associated protein 2
Tssr42109 4 70243662 to 70243691 29 - TSS region transcription start site region 42109
Ywhaq-ps3 4 70248636 to 70249373 737 - pseudogene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta, pseudogene 3
Tssr42110 4 70249440 to 70249446 6 - TSS region transcription start site region 42110
Tssr42111 4 70252150 to 70252164 14 - TSS region transcription start site region 42111
Tssr42112 4 70252168 to 70252179 11 - TSS region transcription start site region 42112
Tssr42113 4 70260336 to 70260337 1 - TSS region transcription start site region 42113
Tssr42114 4 70307305 to 70307316 11 - TSS region transcription start site region 42114
Tssr42115 4 70307349 to 70307358 9 - TSS region transcription start site region 42115
Tssr37622 4 70378117 to 70378127 10 + TSS region transcription start site region 37622
Tssr37623 4 70378142 to 70378159 17 + TSS region transcription start site region 37623
Tssr42116 4 70378175 to 70378194 19 - TSS region transcription start site region 42116
Tssr37624 4 70378175 to 70378216 41 + TSS region transcription start site region 37624
Tssr42117 4 70378207 to 70378214 7 - TSS region transcription start site region 42117
Tssr42118 4 70378219 to 70378262 43 - TSS region transcription start site region 42118
Tssr37625 4 70378219 to 70378228 9 + TSS region transcription start site region 37625
Cpgi14383 4 70410010 to 70410720 710 CpG island CpG island 14383
Tssr42119 4 70410305 to 70410323 18 - TSS region transcription start site region 42119
Tssr42120 4 70410334 to 70410360 26 - TSS region transcription start site region 42120
Tssr42121 4 70410422 to 70410463 41 - TSS region transcription start site region 42121
Gm26320 4 70412618 to 70412923 305 - unclassified non-coding RNA gene predicted gene, 26320
Megf9 4 70431927 to 70534928 103001 - protein coding gene multiple EGF-like-domains 9
Tssr42122 4 70433431 to 70433462 31 - TSS region transcription start site region 42122
Cpgi14384 4 70534153 to 70535677 1524 CpG island CpG island 14384
Tssr42123 4 70534870 to 70534885 15 - TSS region transcription start site region 42123
Tssr42124 4 70534904 to 70534987 83 - TSS region transcription start site region 42124
Gm32209 4 70553680 to 70665012 111332 + lncRNA gene predicted gene, 32209
Tssr37626 4 70553692 to 70553734 42 + TSS region transcription start site region 37626
Tssr37627 4 70582416 to 70582423 7 + TSS region transcription start site region 37627
Tssr37628 4 70625173 to 70625202 29 + TSS region transcription start site region 37628
Tssr37629 4 70625207 to 70625220 13 + TSS region transcription start site region 37629
Tssr1204 4 70625224 to 70625229 5 + TSS region transcription start site region 1204
D4Mit132 4 70672553 to 70672675 122 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 132
D4Dcr7 4 70672554 to 70672659 105 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 7
Gm42297 4 70679233 to 70691711 12478 + lncRNA gene predicted gene, 42297
D4Mit83 4 70962376 to 70962548 172 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 83
Gm11227 4 71072673 to 71073143 470 + pseudogene predicted gene 11227
Gm11228 4 71075109 to 71131133 56024 - lincRNA gene predicted gene 11228
Gm18534 4 71094603 to 71095899 1296 - pseudogene predicted gene, 18534
Gm11229 4 71285942 to 71286378 436 + pseudogene predicted gene 11229
Rps18-ps1 4 71370738 to 71371196 458 - pseudogene ribosomal protein S18, pseudogene 1
Gm42298 4 71381969 to 71397235 15266 + lncRNA gene predicted gene, 42298
Hbasrq1a 4 71553352 to 71553352 0 QTL habituation of the acoustic startle response QTL 1a
Hbasrq1 4 71553352 to 71553352 0 QTL habituation of the acoustic startle response QTL 1
Gm11231 4 71678013 to 71679718 1705 + pseudogene predicted gene 11231
Gm11232 4 71755746 to 71757960 2214 - protein coding gene predicted gene 11232
Gm11233 4 71867988 to 71868977 989 + pseudogene predicted gene 11233
Gm11234 4 71980477 to 71999559 19082 + lincRNA gene predicted gene 11234
Tle1 4 72117142 to 72200919 83777 - protein coding gene transducin-like enhancer of split 1
Tssr42125 4 72137116 to 72137129 13 - TSS region transcription start site region 42125
Gm11250 4 72168768 to 72169449 681 + antisense lncRNA gene predicted gene 11250
Tssr42126 4 72169546 to 72169549 3 - TSS region transcription start site region 42126
Tssr42127 4 72169580 to 72169585 5 - TSS region transcription start site region 42127
Tssr42128 4 72193341 to 72193353 12 - TSS region transcription start site region 42128
Tssr42129 4 72198308 to 72198319 11 - TSS region transcription start site region 42129
Cpgi14385 4 72198985 to 72199320 335 CpG island CpG island 14385
Tssr42130 4 72199030 to 72199063 33 - TSS region transcription start site region 42130
Tssr42131 4 72199071 to 72199108 37 - TSS region transcription start site region 42131
Cpgi14386 4 72199638 to 72201789 2151 CpG island CpG island 14386
Tssr42132 4 72200739 to 72200746 7 - TSS region transcription start site region 42132
Tssr42133 4 72200833 to 72200928 95 - TSS region transcription start site region 42133
C630043F03Rik 4 72201244 to 72203930 2686 + lncRNA gene RIKEN cDNA C630043F03 gene
Tssr37630 4 72201258 to 72201365 107 + TSS region transcription start site region 37630
D4Mit85 4 72377575 to 72377715 140 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 85
D4Mit275 4 72514689 to 72514887 198 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 275