Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:6526894-9807353

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181 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm11801 4 6539561 to 6540306 745 + pseudogene predicted gene 11801
D4Mit315 4 6592265 to 6592368 103 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 315
Gm22473 4 6634164 to 6634295 131 - snoRNA gene predicted gene, 22473
Tox 4 6686353 to 6991552 305199 - protein coding gene thymocyte selection-associated high mobility group box
Tssr36404 4 6688146 to 6688193 47 + TSS region transcription start site region 36404
Gm11802 4 6688169 to 6704160 15991 + antisense lncRNA gene predicted gene 11802
Tssr36405 4 6702138 to 6702145 7 + TSS region transcription start site region 36405
Tssr40863 4 6763900 to 6763903 3 - TSS region transcription start site region 40863
Tssr40864 4 6776567 to 6776571 4 - TSS region transcription start site region 40864
Tssr1113 4 6806993 to 6807006 13 - TSS region transcription start site region 1113
Tssr40865 4 6903764 to 6903778 14 - TSS region transcription start site region 40865
2610024J18Rik 4 6941892 to 6942297 405 unclassified gene RIKEN cDNA 2610024J18 gene
Tssr40866 4 6989107 to 6989122 15 - TSS region transcription start site region 40866
Cpgi14003 4 6989515 to 6991616 2101 CpG island CpG island 14003
Tssr40867 4 6989635 to 6989644 9 - TSS region transcription start site region 40867
Tssr40868 4 6989647 to 6989673 26 - TSS region transcription start site region 40868
Tssr40869 4 6990459 to 6990534 75 - TSS region transcription start site region 40869
Tssr40870 4 6990616 to 6990635 19 - TSS region transcription start site region 40870
Tssr40871 4 6990646 to 6990662 16 - TSS region transcription start site region 40871
Tssr36406 4 6990738 to 6990766 28 + TSS region transcription start site region 36406
Tssr40872 4 6990774 to 6990823 49 - TSS region transcription start site region 40872
Tssr40873 4 6990824 to 6990853 29 - TSS region transcription start site region 40873
Tssr40874 4 6991249 to 6991264 15 - TSS region transcription start site region 40874
Gm11804 4 7039047 to 7039514 467 - pseudogene predicted gene 11804
Gm33462 4 7133973 to 7162454 28481 + lncRNA gene predicted gene, 33462
Gm33539 4 7166908 to 7175024 8116 + lncRNA gene predicted gene, 33539
Gm33646 4 7192184 to 7215586 23402 + lncRNA gene predicted gene, 33646
Tssr40875 4 7442554 to 7442557 3 - TSS region transcription start site region 40875
Tssr40876 4 7455076 to 7455087 11 - TSS region transcription start site region 40876
Tssr40877 4 7455236 to 7455249 13 - TSS region transcription start site region 40877
Tssr40878 4 7455278 to 7455298 20 - TSS region transcription start site region 40878
Tssr36407 4 7455513 to 7455532 19 + TSS region transcription start site region 36407
8430436N08Rik 4 7560688 to 7573801 13113 + lincRNA gene RIKEN cDNA 8430436N08 gene
Gm33752 4 7581585 to 7648909 67324 - lncRNA gene predicted gene, 33752
Tssr36408 4 7669955 to 7669958 3 + TSS region transcription start site region 36408
Tssr40879 4 7687356 to 7687365 9 - TSS region transcription start site region 40879
Gm11795 4 7759670 to 7763930 4260 + lincRNA gene predicted gene 11795
Gm11794 4 7763264 to 7763500 236 - pseudogene predicted gene 11794
Gm23860 4 7820916 to 7821047 131 + snoRNA gene predicted gene, 23860
Tssr40880 4 7898001 to 7898018 17 - TSS region transcription start site region 40880
Tssr40881 4 7912031 to 7912042 11 - TSS region transcription start site region 40881
Tssr40882 4 7912057 to 7912071 14 - TSS region transcription start site region 40882
Gm11800 4 8118620 to 8119736 1116 + pseudogene predicted gene 11800
Tssr40883 4 8142818 to 8142821 3 - TSS region transcription start site region 40883
Car8 4 8143362 to 8239041 95679 - protein coding gene carbonic anhydrase 8
Gm11799 4 8166894 to 8167353 459 - pseudogene predicted gene 11799
Gm25355 4 8235582 to 8235682 100 + miRNA gene predicted gene, 25355
Tssr40884 4 8238091 to 8238102 11 - TSS region transcription start site region 40884
Cpgi14004 4 8238642 to 8239282 640 CpG island CpG island 14004
Tssr40885 4 8239034 to 8239047 13 - TSS region transcription start site region 40885
D4Mit235 4 8328955 to 8329070 115 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 235
D4Mit235.1 4 8329044 to 8329159 115 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 235.1
Gm42252 4 8374934 to 8419717 44783 - lncRNA gene predicted gene, 42252
Whl 4 8426721 to 9574055 1147334 heritable phenotypic marker wheels
D4Mit104 4 8426721 to 8426963 242 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 104
D4Mit104.1 4 8426747 to 8426860 113 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 104.1
Gm37386 4 8438522 to 8454247 15725 - unclassified gene predicted gene, 37386
Gm11810 4 8456166 to 8456498 332 - pseudogene predicted gene 11810
Tssr40886 4 8456557 to 8456558 1 - TSS region transcription start site region 40886
Tssr36409 4 8461427 to 8461461 34 + TSS region transcription start site region 36409
Gm18098 4 8461492 to 8467480 5988 + pseudogene predicted gene, 18098
Cpgi14005 4 8535445 to 8536494 1049 CpG island CpG island 14005
Rab2a 4 8535587 to 8607702 72115 + protein coding gene RAB2A, member RAS oncogene family
Tssr36410 4 8535604 to 8535717 113 + TSS region transcription start site region 36410
Tssr36411 4 8535729 to 8535738 9 + TSS region transcription start site region 36411
Tssr36412 4 8535818 to 8535851 33 + TSS region transcription start site region 36412
Tssr36413 4 8553747 to 8553751 4 + TSS region transcription start site region 36413
D130047N11Rik 4 8582775 to 8586326 3551 unclassified gene RIKEN cDNA D130047N11 gene
C530036F05Rik 4 8596992 to 8599711 2719 unclassified gene RIKEN cDNA C530036F05 gene
Tssr1114 4 8625733 to 8625735 2 + TSS region transcription start site region 1114
Gm42253 4 8635181 to 8646297 11116 - lncRNA gene predicted gene, 42253
Tssr40887 4 8642812 to 8642816 4 - TSS region transcription start site region 40887
Cpgi14006 4 8646904 to 8647795 891 CpG island CpG island 14006
Gm8273 4 8646963 to 8649081 2118 - unclassified gene predicted gene 8273
Cpgi14007 4 8648083 to 8648583 500 CpG island CpG island 14007
Tssr40888 4 8648438 to 8648459 21 - TSS region transcription start site region 40888
Gm11809 4 8672636 to 8673582 946 - pseudogene predicted gene 11809
Tssr40889 4 8673720 to 8673729 9 - TSS region transcription start site region 40889
Cpgi14008 4 8689636 to 8692377 2741 CpG island CpG island 14008
Tssr36414 4 8690399 to 8690453 54 + TSS region transcription start site region 36414
Chd7 4 8690406 to 8867659 177253 + protein coding gene chromodomain helicase DNA binding protein 7
Tssr36415 4 8690537 to 8690583 46 + TSS region transcription start site region 36415
Tssr36416 4 8691303 to 8691380 77 + TSS region transcription start site region 36416
Tssr36417 4 8711764 to 8711767 3 + TSS region transcription start site region 36417
Gm46841 4 8720972 to 8731950 10978 + protein coding gene predicted gene, 46841
Tssr36418 4 8731997 to 8732000 3 + TSS region transcription start site region 36418
Tssr36419 4 8735931 to 8735942 11 + TSS region transcription start site region 36419
Tssr36420 4 8735946 to 8735963 17 + TSS region transcription start site region 36420
Tssr36421 4 8735969 to 8736085 116 + TSS region transcription start site region 36421
Tssr1115 4 8736088 to 8736099 11 + TSS region transcription start site region 1115
Cpgi14009 4 8751730 to 8752288 558 CpG island CpG island 14009
Tssr36422 4 8752330 to 8752351 21 + TSS region transcription start site region 36422
Tssr36423 4 8785543 to 8785550 7 + TSS region transcription start site region 36423
Tssr36424 4 8785651 to 8785688 37 + TSS region transcription start site region 36424
Tssr36425 4 8800212 to 8800237 25 + TSS region transcription start site region 36425
Tssr36426 4 8803427 to 8803441 14 + TSS region transcription start site region 36426
Tssr36427 4 8806245 to 8806252 7 + TSS region transcription start site region 36427
Tssr36428 4 8811279 to 8811290 11 + TSS region transcription start site region 36428
Tssr36429 4 8811323 to 8811339 16 + TSS region transcription start site region 36429
Tssr36430 4 8811341 to 8811342 1 + TSS region transcription start site region 36430
Tssr36431 4 8811346 to 8811357 11 + TSS region transcription start site region 36431
Tssr36432 4 8811363 to 8811377 14 + TSS region transcription start site region 36432
Tssr36433 4 8811421 to 8811440 19 + TSS region transcription start site region 36433
Tssr36434 4 8821771 to 8821780 9 + TSS region transcription start site region 36434
Tssr36435 4 8821783 to 8821802 19 + TSS region transcription start site region 36435
Tssr1116 4 8822135 to 8822139 4 + TSS region transcription start site region 1116
Tssr40890 4 8822627 to 8822634 7 - TSS region transcription start site region 40890
Tssr36436 4 8822782 to 8822804 22 + TSS region transcription start site region 36436
Tssr36437 4 8822809 to 8822818 9 + TSS region transcription start site region 36437
Tssr40891 4 8823241 to 8823251 10 - TSS region transcription start site region 40891
Tssr36438 4 8837710 to 8837722 12 + TSS region transcription start site region 36438
Tssr36439 4 8837728 to 8837754 26 + TSS region transcription start site region 36439
Tssr36440 4 8837825 to 8837836 11 + TSS region transcription start site region 36440
Tssr36441 4 8838989 to 8839003 14 + TSS region transcription start site region 36441
Tssr36442 4 8840334 to 8840347 13 + TSS region transcription start site region 36442
Tssr36443 4 8840365 to 8840391 26 + TSS region transcription start site region 36443
Tssr36444 4 8840483 to 8840493 10 + TSS region transcription start site region 36444
Tssr36445 4 8842377 to 8842381 4 + TSS region transcription start site region 36445
Tssr36446 4 8842711 to 8842714 3 + TSS region transcription start site region 36446
Tssr1117 4 8843035 to 8843038 3 + TSS region transcription start site region 1117
Tssr36447 4 8854198 to 8854204 6 + TSS region transcription start site region 36447
Cpgi14010 4 8865760 to 8866532 772 CpG island CpG island 14010
Gm46842 4 8901941 to 8910658 8717 - lncRNA gene predicted gene, 46842
D4Mit360 4 8905620 to 8905732 112 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology-360
Cpgi14011 4 8911114 to 8911939 825 CpG island CpG island 14011
Tssr40892 4 8912860 to 8912892 32 - TSS region transcription start site region 40892
Tssr36448 4 8913007 to 8913018 11 + TSS region transcription start site region 36448
Tssr36449 4 8913019 to 8913029 10 + TSS region transcription start site region 36449
Tssr40893 4 8913686 to 8913689 3 - TSS region transcription start site region 40893
Tssr36450 4 8913812 to 8913846 34 + TSS region transcription start site region 36450
Tssr36451 4 8915755 to 8915791 36 + TSS region transcription start site region 36451
Cpgi14012 4 8922079 to 8922361 282 CpG island CpG island 14012
Tssr40894 4 8926733 to 8926758 25 - TSS region transcription start site region 40894
Tssr1118 4 8939228 to 8939239 11 + TSS region transcription start site region 1118
Tssr36452 4 8939749 to 8939768 19 + TSS region transcription start site region 36452
Rps18-ps2 4 8941259 to 8941656 397 + pseudogene ribosomal protein S18, pseudogene 2
Tssr40895 4 8980268 to 8980270 2 - TSS region transcription start site region 40895
Gm34428 4 9006056 to 9008559 2503 - lncRNA gene predicted gene, 34428
Cpgi14013 4 9027839 to 9028341 502 CpG island CpG island 14013
Gm34288 4 9128924 to 9142887 13963 - lncRNA gene predicted gene, 34288
Cpgi14014 4 9135901 to 9136073 172 CpG island CpG island 14014
Gm23423 4 9210003 to 9210108 105 + snRNA gene predicted gene, 23423
Gm26548 4 9267323 to 9269915 2592 - lincRNA gene predicted gene, 26548
Tssr36453 4 9269285 to 9269335 50 + TSS region transcription start site region 36453
Clvs1 4 9269293 to 9451691 182398 + protein coding gene clavesin 1
Cpgi14015 4 9269309 to 9269814 505 CpG island CpG island 14015
Tssr36454 4 9269338 to 9269362 24 + TSS region transcription start site region 36454
Gm11816 4 9283972 to 9287391 3419 - antisense lncRNA gene predicted gene 11816
Tssr40896 4 9287317 to 9287350 33 - TSS region transcription start site region 40896
D4Mit317 4 9327517 to 9327609 92 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 317
Cpgi14016 4 9337605 to 9337813 208 CpG island CpG island 14016
D130060J02Rik 4 9395378 to 9400974 5596 unclassified non-coding RNA gene RIKEN cDNA D130060J02 gene
Bbaa13 4 9395525 to 9395649 124 QTL B.burgdorferi-associated arthritis 13
D4Mit264 4 9395525 to 9395649 124 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 264
Ksc2 4 9395525 to 9574055 178530 QTL keratinocyte stem cell locus 2
Gm11817 4 9431961 to 9447199 15238 - antisense lncRNA gene predicted gene 11817
Asph 4 9449085 to 9669344 220259 - protein coding gene aspartate-beta-hydroxylase
Tssr40897 4 9451152 to 9451158 6 - TSS region transcription start site region 40897
Cpgi14017 4 9502619 to 9502861 242 CpG island CpG island 14017
Tssr40898 4 9526214 to 9526223 9 - TSS region transcription start site region 40898
D4Mit263 4 9569846 to 9569955 109 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 263
Gm19130 4 9569963 to 9570493 530 - pseudogene predicted gene, 19130
D4Mit181 4 9573923 to 9574055 132 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 181
Tssr40899 4 9602044 to 9602080 36 - TSS region transcription start site region 40899
Tssr40900 4 9613890 to 9613924 34 - TSS region transcription start site region 40900
Tssr40901 4 9643622 to 9643633 11 - TSS region transcription start site region 40901
Tssr40902 4 9643638 to 9643714 76 - TSS region transcription start site region 40902
Tssr40903 4 9651333 to 9651336 3 - TSS region transcription start site region 40903
Tssr40904 4 9652565 to 9652569 4 - TSS region transcription start site region 40904
Tssr40905 4 9661094 to 9661105 11 - TSS region transcription start site region 40905
Cpgi14018 4 9668408 to 9669499 1091 CpG island CpG island 14018
Tssr40906 4 9669068 to 9669113 45 - TSS region transcription start site region 40906
Gm25677 4 9669279 to 9669350 71 + miRNA gene predicted gene, 25677
Gm24152 4 9695645 to 9695807 162 - snRNA gene predicted gene, 24152
D4Mit101 4 9702613 to 9702715 102 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 101
Gm34947 4 9748386 to 9751427 3041 + lncRNA gene predicted gene, 34947
Cpgi14019 4 9770493 to 9771078 585 CpG island CpG island 14019
4930412C18Rik 4 9770585 to 9823411 52826 + lncRNA gene RIKEN cDNA 4930412C18 gene
Tssr36455 4 9770625 to 9770689 64 + TSS region transcription start site region 36455
Cpgi14020 4 9775018 to 9775213 195 CpG island CpG island 14020
Sicd3 4 43760862 to 9395525 -34365337 QTL seizure-induced cell death 3