Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:6389047-7689514

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sdcbp 4 6365680 to 6396122 30442 + protein coding gene syndecan binding protein
Tssr36396 4 6393166 to 6393171 5 + TSS region transcription start site region 36396
Tssr36397 4 6393648 to 6393701 53 + TSS region transcription start site region 36397
Tssr36398 4 6394624 to 6394649 25 + TSS region transcription start site region 36398
Tssr36399 4 6394732 to 6394752 20 + TSS region transcription start site region 36399
Tssr36400 4 6394858 to 6394910 52 + TSS region transcription start site region 36400
Tssr36401 4 6394914 to 6394966 52 + TSS region transcription start site region 36401
Nsmaf 4 6396207 to 6454271 58064 - protein coding gene neutral sphingomyelinase (N-SMase) activation associated factor
Tssr40853 4 6452611 to 6452622 11 - TSS region transcription start site region 40853
Cpgi14002 4 6453435 to 6454392 957 CpG island CpG island 14002
Tssr36402 4 6453495 to 6453509 14 + TSS region transcription start site region 36402
Tssr40854 4 6453617 to 6453661 44 - TSS region transcription start site region 40854
Tssr40855 4 6453663 to 6453678 15 - TSS region transcription start site region 40855
Tssr40856 4 6453692 to 6453700 8 - TSS region transcription start site region 40856
Tssr40857 4 6453747 to 6453759 12 - TSS region transcription start site region 40857
Tssr40858 4 6454068 to 6454075 7 - TSS region transcription start site region 40858
Tssr40859 4 6454158 to 6454226 68 - TSS region transcription start site region 40859
Tssr40860 4 6454233 to 6454244 11 - TSS region transcription start site region 40860
Tssr40861 4 6454262 to 6454330 68 - TSS region transcription start site region 40861
Tssr40862 4 6494242 to 6494269 27 - TSS region transcription start site region 40862
Gm11803 4 6507941 to 6508384 443 - pseudogene predicted gene 11803
Tssr36403 4 6509941 to 6509947 6 + TSS region transcription start site region 36403
Gm11801 4 6539561 to 6540306 745 + pseudogene predicted gene 11801
D4Mit315 4 6592265 to 6592368 103 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 315
Gm22473 4 6634164 to 6634295 131 - snoRNA gene predicted gene, 22473
Tox 4 6686353 to 6991552 305199 - protein coding gene thymocyte selection-associated high mobility group box
Tssr36404 4 6688146 to 6688193 47 + TSS region transcription start site region 36404
Gm11802 4 6688169 to 6704160 15991 + antisense lncRNA gene predicted gene 11802
Tssr36405 4 6702138 to 6702145 7 + TSS region transcription start site region 36405
Tssr40863 4 6763900 to 6763903 3 - TSS region transcription start site region 40863
Tssr40864 4 6776567 to 6776571 4 - TSS region transcription start site region 40864
Tssr1113 4 6806993 to 6807006 13 - TSS region transcription start site region 1113
Tssr40865 4 6903764 to 6903778 14 - TSS region transcription start site region 40865
2610024J18Rik 4 6941892 to 6942297 405 unclassified gene RIKEN cDNA 2610024J18 gene
Tssr40866 4 6989107 to 6989122 15 - TSS region transcription start site region 40866
Cpgi14003 4 6989515 to 6991616 2101 CpG island CpG island 14003
Tssr40867 4 6989635 to 6989644 9 - TSS region transcription start site region 40867
Tssr40868 4 6989647 to 6989673 26 - TSS region transcription start site region 40868
Tssr40869 4 6990459 to 6990534 75 - TSS region transcription start site region 40869
Tssr40870 4 6990616 to 6990635 19 - TSS region transcription start site region 40870
Tssr40871 4 6990646 to 6990662 16 - TSS region transcription start site region 40871
Tssr36406 4 6990738 to 6990766 28 + TSS region transcription start site region 36406
Tssr40872 4 6990774 to 6990823 49 - TSS region transcription start site region 40872
Tssr40873 4 6990824 to 6990853 29 - TSS region transcription start site region 40873
Tssr40874 4 6991249 to 6991264 15 - TSS region transcription start site region 40874
Gm11804 4 7039047 to 7039514 467 - pseudogene predicted gene 11804
Gm33462 4 7133973 to 7162454 28481 + lncRNA gene predicted gene, 33462
Gm33539 4 7166908 to 7175024 8116 + lncRNA gene predicted gene, 33539
Gm33646 4 7192184 to 7215586 23402 + lncRNA gene predicted gene, 33646
Tssr40875 4 7442554 to 7442557 3 - TSS region transcription start site region 40875
Tssr40876 4 7455076 to 7455087 11 - TSS region transcription start site region 40876
Tssr40877 4 7455236 to 7455249 13 - TSS region transcription start site region 40877
Tssr40878 4 7455278 to 7455298 20 - TSS region transcription start site region 40878
Tssr36407 4 7455513 to 7455532 19 + TSS region transcription start site region 36407
8430436N08Rik 4 7560688 to 7573801 13113 + lincRNA gene RIKEN cDNA 8430436N08 gene
Gm33752 4 7581585 to 7648909 67324 - lncRNA gene predicted gene, 33752
Tssr36408 4 7669955 to 7669958 3 + TSS region transcription start site region 36408
Tssr40879 4 7687356 to 7687365 9 - TSS region transcription start site region 40879