Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:63862551-69811581

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lch2 4 45658442 to 67182171 21523729 heritable phenotypic marker low cholesterol 2
Lch 4 45658442 to 67182171 21523729 heritable phenotypic marker low cholesterol
Lhyp 4 60498012 to 66846581 6348569 QTL lung hyperpermeability
Lfibq13 4 63685589 to 65386538 1700949 QTL liver fibrosis QTL 13
Rpl17-ps4 4 63895545 to 63896099 554 - pseudogene ribosomal protein L17, pseudogene 4
Tssr37586 4 63935640 to 63935652 12 + TSS region transcription start site region 37586
Tnc 4 63959785 to 64047015 87230 - protein coding gene tenascin C
Tssr1198 4 63979851 to 63979856 5 + TSS region transcription start site region 1198
Tssr37587 4 63979861 to 63979870 9 + TSS region transcription start site region 37587
Tssr37588 4 63979880 to 63979883 3 + TSS region transcription start site region 37588
Tssr37589 4 63979891 to 63979904 13 + TSS region transcription start site region 37589
Tssr37590 4 63979909 to 63979916 7 + TSS region transcription start site region 37590
Tssr37591 4 63979935 to 63979946 11 + TSS region transcription start site region 37591
Tssr37592 4 63979957 to 63979966 9 + TSS region transcription start site region 37592
Tssr37593 4 63982640 to 63982651 11 + TSS region transcription start site region 37593
Tssr42082 4 63987826 to 63987835 9 - TSS region transcription start site region 42082
Tssr42083 4 63997055 to 63997071 16 - TSS region transcription start site region 42083
Tssr42084 4 63997129 to 63997143 14 - TSS region transcription start site region 42084
Tssr37594 4 63998334 to 63998337 3 + TSS region transcription start site region 37594
8030451A03Rik 4 64012064 to 64148556 136492 + unclassified non-coding RNA gene RIKEN cDNA 8030451A03 gene
Cpgi14374 4 64017138 to 64018056 918 CpG island CpG island 14374
Tssr37595 4 64020178 to 64020194 16 + TSS region transcription start site region 37595
Cpgi14375 4 64046761 to 64047131 370 CpG island CpG island 14375
Tssr42085 4 64046925 to 64046944 19 - TSS region transcription start site region 42085
Gm11216 4 64075533 to 64083814 8281 + lincRNA gene predicted gene 11216
Gm31115 4 64154280 to 64286118 131838 + lncRNA gene predicted gene, 31115
Tssr37596 4 64154361 to 64154405 44 + TSS region transcription start site region 37596
Gm11217 4 64257138 to 64276603 19465 - lincRNA gene predicted gene 11217
Tssr42086 4 64276595 to 64276604 9 - TSS region transcription start site region 42086
D4Mit218 4 64427354 to 64427461 107 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 218
Gm23950 4 64444730 to 64444858 128 + snoRNA gene predicted gene, 23950
D4Mit82 4 64523424 to 64523566 142 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 82
D4Mit325 4 64766778 to 64766885 107 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 325
Gm11218 4 64856926 to 64858139 1213 - pseudogene predicted gene 11218
Gm11219 4 65011230 to 65011587 357 + pseudogene predicted gene 11219
Tssr37597 4 65123748 to 65123768 20 + TSS region transcription start site region 37597
Pappa 4 65124174 to 65357509 233335 + protein coding gene pregnancy-associated plasma protein A
Cpgi14376 4 65124434 to 65125266 832 CpG island CpG island 14376
Tssr37598 4 65156464 to 65156497 33 + TSS region transcription start site region 37598
B.seq 4 65195206 to 65195375 169 DNA segment DNA segment, B
D4Mcg10 4 65285559 to 65285691 132 DNA segment DNA segment, Chr 4, McGill University 10
Tssr37599 4 65339482 to 65339487 5 + TSS region transcription start site region 37599
D4Nds9 4 65341379 to 65341468 89 DNA segment DNA segment, Chr 4, Nuffield Department of Surgery 9
Astn2 4 65380803 to 66404531 1023728 - protein coding gene astrotactin 2
Tssr42087 4 65381346 to 65381358 12 - TSS region transcription start site region 42087
Cpgi14377 4 65381398 to 65381593 195 CpG island CpG island 14377
Mh 4 65386538 to 65386538 0 QTL modifier of hemostasis
Tssr37600 4 65407976 to 65407985 9 + TSS region transcription start site region 37600
Tssr1199 4 65408015 to 65408024 9 + TSS region transcription start site region 1199
D4Mit25 4 65548396 to 65548603 207 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 25
Cpgi14378 4 65604823 to 65605341 518 CpG island CpG island 14378
Tssr37601 4 65604984 to 65605052 68 + TSS region transcription start site region 37601
Trim32 4 65604986 to 65616238 11252 + protein coding gene tripartite motif-containing 32
Tssr37602 4 65605054 to 65605061 7 + TSS region transcription start site region 37602
Cpgi14379 4 65613402 to 65613674 272 CpG island CpG island 14379
Tssr1200 4 65615091 to 65615103 12 + TSS region transcription start site region 1200
Tssr37603 4 65617672 to 65617681 9 + TSS region transcription start site region 37603
3632413A11Rik 4 65623202 to 65626063 2861 unclassified gene RIKEN cDNA 3632413A11 gene
Gm31533 4 65628952 to 65634800 5848 + lncRNA gene predicted gene, 31533
Tssr42088 4 66159778 to 66159786 8 - TSS region transcription start site region 42088
Tssr42089 4 66346157 to 66346160 3 - TSS region transcription start site region 42089
Gm11484 4 66353849 to 66354186 337 + pseudogene predicted gene 11484
Cpgi14380 4 66402673 to 66403173 500 CpG island CpG island 14380
Cpgi14381 4 66403426 to 66404994 1568 CpG island CpG island 14381
Tssr42090 4 66404434 to 66404456 22 - TSS region transcription start site region 42090
Tssr42091 4 66404458 to 66404509 51 - TSS region transcription start site region 42091
Tssr42092 4 66404512 to 66404527 15 - TSS region transcription start site region 42092
D4Mcg6 4 66430883 to 66431000 117 DNA segment DNA segment, Chr 4, McGill University 6
D4Mcg27 4 66517187 to 66517326 139 DNA segment DNA segment, Chr 4, McGill University 27
Gm25480 4 66544061 to 66544193 132 + snoRNA gene predicted gene, 25480
D4Mcg24 4 66561307 to 66561419 112 DNA segment DNA segment, Chr 4, McGill University 24
D4Mcg25 4 66652069 to 66652234 165 DNA segment DNA segment, Chr 4, McGill University 25
Gm11220 4 66725070 to 66725544 474 - pseudogene predicted gene 11220
Tssr37604 4 66827545 to 66827617 72 + TSS region transcription start site region 37604
Tlr4 4 66827551 to 66846581 19030 + protein coding gene toll-like receptor 4
Yprl2 4 66827551 to 66846581 19030 QTL Yersinia pestis resistance locus 2
Tssr37605 4 66827637 to 66827644 7 + TSS region transcription start site region 37605
Tssr37606 4 66827678 to 66827697 19 + TSS region transcription start site region 37606
Tssr37607 4 66827699 to 66827723 24 + TSS region transcription start site region 37607
Tssr37608 4 66827735 to 66827766 31 + TSS region transcription start site region 37608
Tssr37609 4 66827772 to 66827793 21 + TSS region transcription start site region 37609
Tssr37610 4 66841062 to 66841071 9 + TSS region transcription start site region 37610
Tssr37611 4 66841757 to 66841775 18 + TSS region transcription start site region 37611
Tssr37612 4 66841834 to 66841853 19 + TSS region transcription start site region 37612
Tssr37613 4 66841858 to 66841870 12 + TSS region transcription start site region 37613
Tssr37614 4 66841892 to 66841909 17 + TSS region transcription start site region 37614
Tssr37615 4 66841952 to 66841965 13 + TSS region transcription start site region 37615
Tssr37616 4 66844479 to 66844488 9 + TSS region transcription start site region 37616
Gm11403 4 67165479 to 67165847 368 + pseudogene predicted gene 11403
Lgth3 4 67182025 to 67182171 146 QTL body length 3
Lprm1 4 67182025 to 67182171 146 QTL lymphoproliferation modifier 1
Ccmp4 4 67182025 to 80851736 13669711 QTL cerebellar cAMP 4
D4Mit178 4 67182025 to 67182171 146 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 178
D4Mcg5 4 67189074 to 67189241 167 DNA segment DNA segment, Chr 4, McGill University 5
D.seq 4 67221962 to 67222096 134 DNA segment DNA segment, D
E.seq 4 67330078 to 67330321 243 DNA segment DNA segment, E
Hmgb1-rs18 4 67518553 to 67518994 441 - pseudogene high mobility group box 1, related sequence 18
Gm44497 4 67633153 to 67633229 76 + miRNA gene predicted gene, 44497
CA7.3 4 67797435 to 67797636 201 DNA segment DNA segment, CA7.3
Tssr37617 4 67930852 to 67930854 2 + TSS region transcription start site region 37617
Gm11249 4 67930881 to 67931739 858 + pseudogene predicted gene 11249
Gm11751 4 68023031 to 68137113 114082 + lincRNA gene predicted gene 11751
Tssr1201 4 68125040 to 68125051 11 + TSS region transcription start site region 1201
Gm23738 4 68182532 to 68182702 170 + snRNA gene predicted gene, 23738
CA7.11 4 68188935 to 68189109 174 DNA segment DNA segment, CA7.11
Tssr42093 4 68240914 to 68240919 5 - TSS region transcription start site region 42093
Tcp1-ps1 4 68301246 to 68303290 2044 - pseudogene t-complex protein 1, pseudogene 1
Gm12911 4 68312657 to 68321961 9304 - lincRNA gene predicted gene 12911
Tssr37618 4 68587905 to 68587912 7 + TSS region transcription start site region 37618
Brinp1 4 68761514 to 68954397 192883 - protein coding gene bone morphogenic protein/retinoic acid inducible neural specific 1
Tssr42094 4 68762068 to 68762087 19 - TSS region transcription start site region 42094
9330154F10Rik 4 68800551 to 68801629 1078 unclassified gene RIKEN cDNA 9330154F10 gene
D4Mit346 4 68802434 to 68802554 120 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 346
Tssr42095 4 68882671 to 68882677 6 - TSS region transcription start site region 42095
Tssr42096 4 68937714 to 68937715 1 - TSS region transcription start site region 42096
Cpgi14382 4 68953639 to 68954878 1239 CpG island CpG island 14382
Tssr42097 4 68954256 to 68954267 11 - TSS region transcription start site region 42097
Tssr42098 4 68954351 to 68954397 46 - TSS region transcription start site region 42098
Tssr42099 4 68954414 to 68954423 9 - TSS region transcription start site region 42099
Tssr42100 4 68954429 to 68954438 9 - TSS region transcription start site region 42100
Tssr42101 4 68954740 to 68954758 18 - TSS region transcription start site region 42101
Gm42296 4 68957912 to 68959666 1754 + lncRNA gene predicted gene, 42296
Gm24697 4 69110671 to 69110777 106 + snRNA gene predicted gene, 24697
Tssr1202 4 69157226 to 69157230 4 - TSS region transcription start site region 1202
Gm46884 4 69167538 to 69199826 32288 - lncRNA gene predicted gene, 46884
Gm31905 4 69259299 to 69262035 2736 - lncRNA gene predicted gene, 31905
Gm11404 4 69291621 to 69295121 3500 - pseudogene predicted gene 11404
Tssr42102 4 69395443 to 69395489 46 - TSS region transcription start site region 42102
D4Mit324 4 69604504 to 69604585 81 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 324
Tssr37619 4 69691952 to 69691962 10 + TSS region transcription start site region 37619
Gm11221 4 69691978 to 69692574 596 + pseudogene predicted gene 11221
Tssr42103 4 69758447 to 69758454 7 - TSS region transcription start site region 42103
Tssr42104 4 69758475 to 69758481 6 - TSS region transcription start site region 42104
Tssr42105 4 69758503 to 69758524 21 - TSS region transcription start site region 42105
Tssr42106 4 69758528 to 69758549 21 - TSS region transcription start site region 42106