Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:63378809-64078819

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123 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Akna 4 63367125 to 63403354 36229 - protein coding gene AT-hook transcription factor
Tssr42038 4 63381215 to 63381253 38 - TSS region transcription start site region 42038
Tssr37553 4 63381342 to 63381354 12 + TSS region transcription start site region 37553
Aknaos 4 63381358 to 63394018 12660 + antisense lncRNA gene AT-hook transcription factor, opposite strand
Tssr37554 4 63381368 to 63381373 5 + TSS region transcription start site region 37554
Tssr37555 4 63385477 to 63385488 11 + TSS region transcription start site region 37555
Tssr37556 4 63386010 to 63386028 18 + TSS region transcription start site region 37556
Tssr42039 4 63387073 to 63387083 10 - TSS region transcription start site region 42039
Tssr37557 4 63395157 to 63395167 10 + TSS region transcription start site region 37557
Tssr37558 4 63399519 to 63399522 3 + TSS region transcription start site region 37558
Tssr42040 4 63401670 to 63401701 31 - TSS region transcription start site region 42040
Tssr42041 4 63403245 to 63403259 14 - TSS region transcription start site region 42041
Tssr42042 4 63403269 to 63403274 5 - TSS region transcription start site region 42042
Tssr42043 4 63403277 to 63403286 9 - TSS region transcription start site region 42043
Tssr42044 4 63403330 to 63403350 20 - TSS region transcription start site region 42044
Tssr42045 4 63403361 to 63403376 15 - TSS region transcription start site region 42045
Tssr37559 4 63409605 to 63409627 22 + TSS region transcription start site region 37559
Cpgi14370 4 63409873 to 63410876 1003 CpG island CpG island 14370
Tssr42046 4 63409993 to 63410004 11 - TSS region transcription start site region 42046
Tssr42047 4 63410010 to 63410024 14 - TSS region transcription start site region 42047
Tssr42048 4 63410188 to 63410212 24 - TSS region transcription start site region 42048
Tssr42049 4 63410214 to 63410231 17 - TSS region transcription start site region 42049
Tssr42050 4 63410683 to 63410702 19 - TSS region transcription start site region 42050
Tssr42051 4 63410705 to 63410726 21 - TSS region transcription start site region 42051
Tssr42052 4 63410745 to 63410757 12 - TSS region transcription start site region 42052
Whrn 4 63414910 to 63495991 81081 - protein coding gene whirlin
Tssr42053 4 63418701 to 63418711 10 - TSS region transcription start site region 42053
Tssr42054 4 63452689 to 63452690 1 - TSS region transcription start site region 42054
Tssr42055 4 63467457 to 63467469 12 - TSS region transcription start site region 42055
Cpgi14371 4 63494538 to 63496346 1808 CpG island CpG island 14371
Tssr42056 4 63495982 to 63496033 51 - TSS region transcription start site region 42056
Tssr42057 4 63496035 to 63496065 30 - TSS region transcription start site region 42057
D4Mit244 4 63499084 to 63499193 109 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 244
Cpgi14372 4 63544624 to 63545375 751 CpG island CpG island 14372
Tssr37560 4 63544747 to 63544762 15 + TSS region transcription start site region 37560
Atp6v1g1 4 63544765 to 63550701 5936 + protein coding gene ATPase, H+ transporting, lysosomal V1 subunit G1
Tssr37561 4 63544799 to 63544853 54 + TSS region transcription start site region 37561
Tssr37562 4 63544870 to 63544881 11 + TSS region transcription start site region 37562
Gm38592 4 63545293 to 63547859 2566 + lncRNA gene predicted gene, 38592
Tssr37563 4 63545395 to 63545398 3 + TSS region transcription start site region 37563
Tssr37564 4 63547863 to 63547867 4 + TSS region transcription start site region 37564
Tssr37565 4 63554190 to 63554197 7 + TSS region transcription start site region 37565
Tssr37566 4 63554603 to 63554609 6 + TSS region transcription start site region 37566
Cpgi14373 4 63558366 to 63559466 1100 CpG island CpG island 14373
Tssr37567 4 63558458 to 63558503 45 + TSS region transcription start site region 37567
Tssr42058 4 63558730 to 63558742 12 - TSS region transcription start site region 42058
Tssr37568 4 63558748 to 63558859 111 + TSS region transcription start site region 37568
Tmem268 4 63558781 to 63586357 27576 + protein coding gene transmembrane protein 268
Tssr37569 4 63558879 to 63558932 53 + TSS region transcription start site region 37569
Tssr37570 4 63560188 to 63560199 11 + TSS region transcription start site region 37570
Tssr37571 4 63560217 to 63560236 19 + TSS region transcription start site region 37571
Tssr37572 4 63560241 to 63560266 25 + TSS region transcription start site region 37572
Tssr37573 4 63560627 to 63560649 22 + TSS region transcription start site region 37573
Tssr37574 4 63560653 to 63560660 7 + TSS region transcription start site region 37574
Tssr37575 4 63560703 to 63560710 7 + TSS region transcription start site region 37575
Tssr37576 4 63560716 to 63560740 24 + TSS region transcription start site region 37576
Gm11483 4 63567414 to 63567660 246 - pseudogene predicted gene 11483
Gm24448 4 63567662 to 63567768 106 - snRNA gene predicted gene, 24448
Tssr37577 4 63580560 to 63580568 8 + TSS region transcription start site region 37577
Gm11213 4 63596901 to 63605261 8360 - lncRNA gene predicted gene 11213
Tssr42059 4 63600750 to 63600769 19 - TSS region transcription start site region 42059
Tssr42060 4 63605075 to 63605099 24 - TSS region transcription start site region 42060
Tssr42061 4 63605126 to 63605165 39 - TSS region transcription start site region 42061
Tex48 4 63607089 to 63622428 15339 - protein coding gene testis expressed 48
Tssr42062 4 63622414 to 63622417 3 - TSS region transcription start site region 42062
Tssr42063 4 63622421 to 63622448 27 - TSS region transcription start site region 42063
Gm24234 4 63631682 to 63631788 106 - snRNA gene predicted gene, 24234
Tssr37578 4 63634408 to 63634420 12 + TSS region transcription start site region 37578
Gm11482 4 63634421 to 63639440 5019 + lincRNA gene predicted gene 11482
Tssr1197 4 63634424 to 63634429 5 + TSS region transcription start site region 1197
Tssr37579 4 63634431 to 63634439 8 + TSS region transcription start site region 37579
Gm11214 4 63662359 to 63663379 1020 - pseudogene predicted gene 11214
Tssr37580 4 63667587 to 63667598 11 + TSS region transcription start site region 37580
Tssr37581 4 63667605 to 63667632 27 + TSS region transcription start site region 37581
Tssr37582 4 63668073 to 63668076 3 + TSS region transcription start site region 37582
Tssr37583 4 63668596 to 63668607 11 + TSS region transcription start site region 37583
Aanq1 4 63685589 to 63685589 0 QTL aristolochic acid nephrotoxicity QTL 1
Lfibq13 4 63685589 to 65386538 1700949 QTL liver fibrosis QTL 13
Gm42295 4 63696384 to 63744868 48484 + lncRNA gene predicted gene, 42295
Tnfsf15 4 63727084 to 63745113 18029 - protein coding gene tumor necrosis factor (ligand) superfamily, member 15
Tssr42064 4 63728809 to 63728819 10 - TSS region transcription start site region 42064
Tssr37584 4 63729009 to 63729027 18 + TSS region transcription start site region 37584
Tssr42065 4 63729163 to 63729189 26 - TSS region transcription start site region 42065
Tssr42066 4 63729357 to 63729368 11 - TSS region transcription start site region 42066
Tssr42067 4 63729500 to 63729509 9 - TSS region transcription start site region 42067
Tssr42068 4 63729556 to 63729567 11 - TSS region transcription start site region 42068
Tssr42069 4 63730449 to 63730459 10 - TSS region transcription start site region 42069
Tssr37585 4 63734431 to 63734435 4 + TSS region transcription start site region 37585
Tssr42070 4 63743750 to 63743768 18 - TSS region transcription start site region 42070
Tssr42071 4 63744013 to 63744041 28 - TSS region transcription start site region 42071
Gm42294 4 63745032 to 63773177 28145 + lncRNA gene predicted gene, 42294
Tssr42072 4 63745055 to 63745061 6 - TSS region transcription start site region 42072
Tssr42073 4 63745107 to 63745118 11 - TSS region transcription start site region 42073
Tssr42074 4 63745190 to 63745205 15 - TSS region transcription start site region 42074
Tnfsf8 4 63832820 to 63861508 28688 - protein coding gene tumor necrosis factor (ligand) superfamily, member 8
Tssr42075 4 63860892 to 63860921 29 - TSS region transcription start site region 42075
Tssr42076 4 63860923 to 63860946 23 - TSS region transcription start site region 42076
Tssr42077 4 63861029 to 63861046 17 - TSS region transcription start site region 42077
Tssr42078 4 63861100 to 63861122 22 - TSS region transcription start site region 42078
Tssr42079 4 63861278 to 63861293 15 - TSS region transcription start site region 42079
Tssr42080 4 63861296 to 63861318 22 - TSS region transcription start site region 42080
Tssr42081 4 63861326 to 63861355 29 - TSS region transcription start site region 42081
Rpl17-ps4 4 63895545 to 63896099 554 - pseudogene ribosomal protein L17, pseudogene 4
Tssr37586 4 63935640 to 63935652 12 + TSS region transcription start site region 37586
Tnc 4 63959785 to 64047015 87230 - protein coding gene tenascin C
Tssr1198 4 63979851 to 63979856 5 + TSS region transcription start site region 1198
Tssr37587 4 63979861 to 63979870 9 + TSS region transcription start site region 37587
Tssr37588 4 63979880 to 63979883 3 + TSS region transcription start site region 37588
Tssr37589 4 63979891 to 63979904 13 + TSS region transcription start site region 37589
Tssr37590 4 63979909 to 63979916 7 + TSS region transcription start site region 37590
Tssr37591 4 63979935 to 63979946 11 + TSS region transcription start site region 37591
Tssr37592 4 63979957 to 63979966 9 + TSS region transcription start site region 37592
Tssr37593 4 63982640 to 63982651 11 + TSS region transcription start site region 37593
Tssr42082 4 63987826 to 63987835 9 - TSS region transcription start site region 42082
Tssr42083 4 63997055 to 63997071 16 - TSS region transcription start site region 42083
Tssr42084 4 63997129 to 63997143 14 - TSS region transcription start site region 42084
Tssr37594 4 63998334 to 63998337 3 + TSS region transcription start site region 37594
8030451A03Rik 4 64012064 to 64148556 136492 + unclassified non-coding RNA gene RIKEN cDNA 8030451A03 gene
Cpgi14374 4 64017138 to 64018056 918 CpG island CpG island 14374
Tssr37595 4 64020178 to 64020194 16 + TSS region transcription start site region 37595
Cpgi14375 4 64046761 to 64047131 370 CpG island CpG island 14375
Tssr42085 4 64046925 to 64046944 19 - TSS region transcription start site region 42085
Gm11216 4 64075533 to 64083814 8281 + lincRNA gene predicted gene 11216