Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:63270745-63550757

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lyr2 4 14010457 to 63365441 49354984 QTL lymphoma resistance 2
Habiir2 4 39452126 to 63365441 23913315 QTL hyperoxic acute lung injury imprinted region 2
Col27a1 4 63214009 to 63334991 120982 + protein coding gene collagen, type XXVII, alpha 1
Tssr37538 4 63283504 to 63283517 13 + TSS region transcription start site region 37538
Tssr37539 4 63344309 to 63344317 8 + TSS region transcription start site region 37539
Tssr1193 4 63344383 to 63344395 12 - TSS region transcription start site region 1193
Tssr1194 4 63344444 to 63344448 4 + TSS region transcription start site region 1194
Tssr1195 4 63344474 to 63344482 8 + TSS region transcription start site region 1195
Tssr1196 4 63344490 to 63344505 15 + TSS region transcription start site region 1196
Tssr37540 4 63344519 to 63344533 14 + TSS region transcription start site region 37540
Tssr37541 4 63344548 to 63344593 45 + TSS region transcription start site region 37541
Orm1 4 63344560 to 63348163 3603 + protein coding gene orosomucoid 1
Tssr37542 4 63344602 to 63344609 7 + TSS region transcription start site region 37542
Tssr37543 4 63344613 to 63344627 14 + TSS region transcription start site region 37543
Tssr37544 4 63344650 to 63344657 7 + TSS region transcription start site region 37544
Tssr37545 4 63345086 to 63345100 14 + TSS region transcription start site region 37545
Tssr37546 4 63345152 to 63345180 28 + TSS region transcription start site region 37546
Tssr37547 4 63346040 to 63346057 17 + TSS region transcription start site region 37547
Tssr37548 4 63350368 to 63350373 5 + TSS region transcription start site region 37548
Gm11212 4 63350411 to 63353846 3435 + pseudogene predicted gene 11212
Tssr37549 4 63356152 to 63356168 16 + TSS region transcription start site region 37549
Orm3 4 63356162 to 63359511 3349 + protein coding gene orosomucoid 3
Tssr37550 4 63362443 to 63362451 8 + TSS region transcription start site region 37550
Orm2 4 63362449 to 63365877 3428 + protein coding gene orosomucoid 2
Tssr37551 4 63363021 to 63363037 16 + TSS region transcription start site region 37551
D4Nds12 4 63365291 to 63365444 153 DNA segment DNA segment, Chr 4, Nuffield Department of Surgery 12
D4Mit17 4 63365294 to 63365441 147 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 17
Bod2 4 63365294 to 63365441 147 QTL bone length and organs 2
Adip23 4 63365294 to 63365441 147 QTL adiposity 23
Stmm3 4 63365294 to 91117397 27752103 QTL skin tumor modifier of MSM 3
Akna 4 63367125 to 63403354 36229 - protein coding gene AT-hook transcription factor
Tssr42037 4 63367521 to 63367527 6 - TSS region transcription start site region 42037
Cpgi14369 4 63377038 to 63377243 205 CpG island CpG island 14369
Tssr37552 4 63377106 to 63377142 36 + TSS region transcription start site region 37552
Tssr42038 4 63381215 to 63381253 38 - TSS region transcription start site region 42038
Tssr37553 4 63381342 to 63381354 12 + TSS region transcription start site region 37553
Aknaos 4 63381358 to 63394018 12660 + antisense lncRNA gene AT-hook transcription factor, opposite strand
Tssr37554 4 63381368 to 63381373 5 + TSS region transcription start site region 37554
Tssr37555 4 63385477 to 63385488 11 + TSS region transcription start site region 37555
Tssr37556 4 63386010 to 63386028 18 + TSS region transcription start site region 37556
Tssr42039 4 63387073 to 63387083 10 - TSS region transcription start site region 42039
Tssr37557 4 63395157 to 63395167 10 + TSS region transcription start site region 37557
Tssr37558 4 63399519 to 63399522 3 + TSS region transcription start site region 37558
Tssr42040 4 63401670 to 63401701 31 - TSS region transcription start site region 42040
Tssr42041 4 63403245 to 63403259 14 - TSS region transcription start site region 42041
Tssr42042 4 63403269 to 63403274 5 - TSS region transcription start site region 42042
Tssr42043 4 63403277 to 63403286 9 - TSS region transcription start site region 42043
Tssr42044 4 63403330 to 63403350 20 - TSS region transcription start site region 42044
Tssr42045 4 63403361 to 63403376 15 - TSS region transcription start site region 42045
Tssr37559 4 63409605 to 63409627 22 + TSS region transcription start site region 37559
Cpgi14370 4 63409873 to 63410876 1003 CpG island CpG island 14370
Tssr42046 4 63409993 to 63410004 11 - TSS region transcription start site region 42046
Tssr42047 4 63410010 to 63410024 14 - TSS region transcription start site region 42047
Tssr42048 4 63410188 to 63410212 24 - TSS region transcription start site region 42048
Tssr42049 4 63410214 to 63410231 17 - TSS region transcription start site region 42049
Tssr42050 4 63410683 to 63410702 19 - TSS region transcription start site region 42050
Tssr42051 4 63410705 to 63410726 21 - TSS region transcription start site region 42051
Tssr42052 4 63410745 to 63410757 12 - TSS region transcription start site region 42052
Whrn 4 63414910 to 63495991 81081 - protein coding gene whirlin
Tssr42053 4 63418701 to 63418711 10 - TSS region transcription start site region 42053
Tssr42054 4 63452689 to 63452690 1 - TSS region transcription start site region 42054
Tssr42055 4 63467457 to 63467469 12 - TSS region transcription start site region 42055
Cpgi14371 4 63494538 to 63496346 1808 CpG island CpG island 14371
Tssr42056 4 63495982 to 63496033 51 - TSS region transcription start site region 42056
Tssr42057 4 63496035 to 63496065 30 - TSS region transcription start site region 42057
D4Mit244 4 63499084 to 63499193 109 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 244
Cpgi14372 4 63544624 to 63545375 751 CpG island CpG island 14372
Tssr37560 4 63544747 to 63544762 15 + TSS region transcription start site region 37560
Atp6v1g1 4 63544765 to 63550701 5936 + protein coding gene ATPase, H+ transporting, lysosomal V1 subunit G1
Tssr37561 4 63544799 to 63544853 54 + TSS region transcription start site region 37561
Tssr37562 4 63544870 to 63544881 11 + TSS region transcription start site region 37562
Gm38592 4 63545293 to 63547859 2566 + lncRNA gene predicted gene, 38592
Tssr37563 4 63545395 to 63545398 3 + TSS region transcription start site region 37563
Tssr37564 4 63547863 to 63547867 4 + TSS region transcription start site region 37564