Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:62459341-63419474

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171 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lyr2 4 14010457 to 63365441 49354984 QTL lymphoma resistance 2
Habiir2 4 39452126 to 63365441 23913315 QTL hyperoxic acute lung injury imprinted region 2
Wdr31 4 62448653 to 62470896 22243 - protein coding gene WD repeat domain 31
Tssr42004 4 62468880 to 62468903 23 - TSS region transcription start site region 42004
Tssr42005 4 62468907 to 62468923 16 - TSS region transcription start site region 42005
Cpgi14359 4 62470629 to 62471166 537 CpG island CpG island 14359
Tssr42006 4 62470868 to 62470922 54 - TSS region transcription start site region 42006
Tssr42007 4 62470924 to 62470932 8 - TSS region transcription start site region 42007
Cpgi14360 4 62479911 to 62480700 789 CpG island CpG island 14360
Tssr37492 4 62480025 to 62480098 73 + TSS region transcription start site region 37492
Bspry 4 62480053 to 62497298 17245 + protein coding gene B-box and SPRY domain containing
Hdhd3 4 62499054 to 62502200 3146 - protein coding gene haloacid dehalogenase-like hydrolase domain containing 3
Cpgi14361 4 62501916 to 62502510 594 CpG island CpG island 14361
Tssr42008 4 62502176 to 62502182 6 - TSS region transcription start site region 42008
Tssr42009 4 62502200 to 62502226 26 - TSS region transcription start site region 42009
Tssr42010 4 62502233 to 62502260 27 - TSS region transcription start site region 42010
Alad 4 62509169 to 62519918 10749 - protein coding gene aminolevulinate, delta-, dehydratase
Cms1 4 62509169 to 62519918 10749 QTL resistance to Coccidioides immitis 1
Tssr42011 4 62514178 to 62514220 42 - TSS region transcription start site region 42011
Tssr42012 4 62516668 to 62516703 35 - TSS region transcription start site region 42012
Tssr42013 4 62516706 to 62516721 15 - TSS region transcription start site region 42013
Tssr42014 4 62516743 to 62516752 9 - TSS region transcription start site region 42014
Cpgi14362 4 62519543 to 62520273 730 CpG island CpG island 14362
Tssr42015 4 62519885 to 62519967 82 - TSS region transcription start site region 42015
Tssr42016 4 62520021 to 62520035 14 - TSS region transcription start site region 42016
Tssr42017 4 62520054 to 62520079 25 - TSS region transcription start site region 42017
Pole3 4 62523798 to 62525014 1216 - protein coding gene polymerase (DNA directed), epsilon 3 (p17 subunit)
Tssr42018 4 62524396 to 62524412 16 - TSS region transcription start site region 42018
Cpgi14363 4 62524516 to 62525572 1056 CpG island CpG island 14363
Tssr42019 4 62524782 to 62524805 23 - TSS region transcription start site region 42019
Tssr42020 4 62524844 to 62524850 6 - TSS region transcription start site region 42020
Tssr42021 4 62525036 to 62525080 44 - TSS region transcription start site region 42021
4933430I17Rik 4 62525369 to 62547993 22624 + protein coding gene RIKEN cDNA 4933430I17 gene
Tssr37493 4 62525618 to 62525622 4 + TSS region transcription start site region 37493
Tssr37494 4 62543312 to 62543342 30 + TSS region transcription start site region 37494
Tssr37495 4 62559803 to 62559808 5 + TSS region transcription start site region 37495
Tssr37496 4 62559814 to 62559821 7 + TSS region transcription start site region 37496
Tssr37497 4 62559825 to 62559838 13 + TSS region transcription start site region 37497
Rgs3 4 62559835 to 62703019 143184 + protein coding gene regulator of G-protein signaling 3
Cpgi14364 4 62583182 to 62583929 747 CpG island CpG island 14364
Tssr37498 4 62583501 to 62583564 63 + TSS region transcription start site region 37498
Tssr37499 4 62583568 to 62583585 17 + TSS region transcription start site region 37499
Tssr37500 4 62615271 to 62615286 15 + TSS region transcription start site region 37500
Tssr37501 4 62619515 to 62619530 15 + TSS region transcription start site region 37501
Tssr37502 4 62619648 to 62619669 21 + TSS region transcription start site region 37502
Tssr37503 4 62619682 to 62619719 37 + TSS region transcription start site region 37503
Tssr37504 4 62619720 to 62619740 20 + TSS region transcription start site region 37504
Gm11209 4 62627677 to 62633712 6035 - antisense lncRNA gene predicted gene 11209
Tssr37505 4 62634133 to 62634148 15 + TSS region transcription start site region 37505
Tssr37506 4 62634279 to 62634294 15 + TSS region transcription start site region 37506
Tssr37507 4 62634366 to 62634388 22 + TSS region transcription start site region 37507
Tssr37508 4 62634397 to 62634413 16 + TSS region transcription start site region 37508
Tssr37509 4 62634440 to 62634487 47 + TSS region transcription start site region 37509
Tssr37510 4 62638576 to 62638584 8 + TSS region transcription start site region 37510
Tssr37511 4 62652458 to 62652477 19 + TSS region transcription start site region 37511
Tssr37512 4 62652481 to 62652497 16 + TSS region transcription start site region 37512
Tssr37513 4 62663620 to 62663664 44 + TSS region transcription start site region 37513
Tssr37514 4 62663683 to 62663709 26 + TSS region transcription start site region 37514
Tssr37515 4 62668864 to 62668915 51 + TSS region transcription start site region 37515
Tssr37516 4 62674201 to 62674238 37 + TSS region transcription start site region 37516
Tssr37517 4 62674328 to 62674355 27 + TSS region transcription start site region 37517
Tssr37518 4 62685391 to 62685416 25 + TSS region transcription start site region 37518
Tssr37519 4 62699669 to 62699689 20 + TSS region transcription start site region 37519
Gm11210 4 62705981 to 62725737 19756 + lincRNA gene predicted gene 11210
Gm11211 4 62723516 to 62727537 4021 - lincRNA gene predicted gene 11211
Tssr42022 4 62733444 to 62733447 3 - TSS region transcription start site region 42022
Gm30699 4 62765215 to 62775577 10362 - lncRNA gene predicted gene, 30699
Gm24117 4 62812428 to 62812560 132 + snoRNA gene predicted gene, 24117
Tssr37520 4 62879698 to 62879699 1 + TSS region transcription start site region 37520
Gm25391 4 62939341 to 62939474 133 + snoRNA gene predicted gene, 25391
Gm11481 4 62939521 to 62939775 254 + pseudogene predicted gene 11481
Gm11480 4 62939912 to 62940570 658 + pseudogene predicted gene 11480
Cpgi14365 4 62965182 to 62966101 919 CpG island CpG island 14365
Tssr37521 4 62965560 to 62965617 57 + TSS region transcription start site region 37521
Zfp618 4 62965573 to 63139708 174135 + protein coding gene zinc finger protein 618
Tssr37522 4 62965648 to 62965671 23 + TSS region transcription start site region 37522
Tssr37523 4 62966155 to 62966159 4 + TSS region transcription start site region 37523
Tssr37524 4 62970846 to 62970851 5 + TSS region transcription start site region 37524
Gm30764 4 62978667 to 62979625 958 - lncRNA gene predicted gene, 30764
Tssr42023 4 62979573 to 62979582 9 - TSS region transcription start site region 42023
Tssr37525 4 62979684 to 62979708 24 + TSS region transcription start site region 37525
Tssr37526 4 63018343 to 63018347 4 + TSS region transcription start site region 37526
Tssr37527 4 63086968 to 63086973 5 + TSS region transcription start site region 37527
Cpgi14366 4 63115242 to 63115453 211 CpG island CpG island 14366
Ambp 4 63143275 to 63154172 10897 - protein coding gene alpha 1 microglobulin/bikunin precursor
Tssr42024 4 63149450 to 63149466 16 - TSS region transcription start site region 42024
Tssr37528 4 63150350 to 63150360 10 + TSS region transcription start site region 37528
Tssr37529 4 63151452 to 63151483 31 + TSS region transcription start site region 37529
Tssr37530 4 63152572 to 63152592 20 + TSS region transcription start site region 37530
Tssr42025 4 63152617 to 63152628 11 - TSS region transcription start site region 42025
Tssr37531 4 63152641 to 63152653 12 + TSS region transcription start site region 37531
Tssr42026 4 63152646 to 63152670 24 - TSS region transcription start site region 42026
Tssr42027 4 63152671 to 63152686 15 - TSS region transcription start site region 42027
Tssr42028 4 63152690 to 63152706 16 - TSS region transcription start site region 42028
Tssr42029 4 63154130 to 63154150 20 - TSS region transcription start site region 42029
Tssr42030 4 63154280 to 63154297 17 - TSS region transcription start site region 42030
Tssr42031 4 63154790 to 63154830 40 - TSS region transcription start site region 42031
Tssr42032 4 63154837 to 63154848 11 - TSS region transcription start site region 42032
Kif12 4 63165630 to 63172131 6501 - protein coding gene kinesin family member 12
Cpgi14367 4 63171124 to 63171548 424 CpG island CpG island 14367
Tssr42033 4 63172017 to 63172024 7 - TSS region transcription start site region 42033
Tssr42034 4 63172050 to 63172079 29 - TSS region transcription start site region 42034
Tssr42035 4 63172086 to 63172102 16 - TSS region transcription start site region 42035
Tssr42036 4 63172118 to 63172139 21 - TSS region transcription start site region 42036
Tssr37532 4 63204138 to 63204167 29 + TSS region transcription start site region 37532
Cpgi14368 4 63213972 to 63216309 2337 CpG island CpG island 14368
Col27a1 4 63214009 to 63334991 120982 + protein coding gene collagen, type XXVII, alpha 1
Tssr1192 4 63214024 to 63214037 13 + TSS region transcription start site region 1192
Tssr37533 4 63214088 to 63214101 13 + TSS region transcription start site region 37533
Tssr37534 4 63214134 to 63214150 16 + TSS region transcription start site region 37534
Tssr37535 4 63215402 to 63215424 22 + TSS region transcription start site region 37535
Tssr37536 4 63215540 to 63215549 9 + TSS region transcription start site region 37536
Tssr37537 4 63215557 to 63215568 11 + TSS region transcription start site region 37537
Mir455 4 63256851 to 63256932 81 + miRNA gene microRNA 455
Tssr37538 4 63283504 to 63283517 13 + TSS region transcription start site region 37538
Tssr37539 4 63344309 to 63344317 8 + TSS region transcription start site region 37539
Tssr1193 4 63344383 to 63344395 12 - TSS region transcription start site region 1193
Tssr1194 4 63344444 to 63344448 4 + TSS region transcription start site region 1194
Tssr1195 4 63344474 to 63344482 8 + TSS region transcription start site region 1195
Tssr1196 4 63344490 to 63344505 15 + TSS region transcription start site region 1196
Tssr37540 4 63344519 to 63344533 14 + TSS region transcription start site region 37540
Tssr37541 4 63344548 to 63344593 45 + TSS region transcription start site region 37541
Orm1 4 63344560 to 63348163 3603 + protein coding gene orosomucoid 1
Tssr37542 4 63344602 to 63344609 7 + TSS region transcription start site region 37542
Tssr37543 4 63344613 to 63344627 14 + TSS region transcription start site region 37543
Tssr37544 4 63344650 to 63344657 7 + TSS region transcription start site region 37544
Tssr37545 4 63345086 to 63345100 14 + TSS region transcription start site region 37545
Tssr37546 4 63345152 to 63345180 28 + TSS region transcription start site region 37546
Tssr37547 4 63346040 to 63346057 17 + TSS region transcription start site region 37547
Tssr37548 4 63350368 to 63350373 5 + TSS region transcription start site region 37548
Gm11212 4 63350411 to 63353846 3435 + pseudogene predicted gene 11212
Tssr37549 4 63356152 to 63356168 16 + TSS region transcription start site region 37549
Orm3 4 63356162 to 63359511 3349 + protein coding gene orosomucoid 3
Tssr37550 4 63362443 to 63362451 8 + TSS region transcription start site region 37550
Orm2 4 63362449 to 63365877 3428 + protein coding gene orosomucoid 2
Tssr37551 4 63363021 to 63363037 16 + TSS region transcription start site region 37551
D4Nds12 4 63365291 to 63365444 153 DNA segment DNA segment, Chr 4, Nuffield Department of Surgery 12
Adip23 4 63365294 to 63365441 147 QTL adiposity 23
D4Mit17 4 63365294 to 63365441 147 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 17
Bod2 4 63365294 to 63365441 147 QTL bone length and organs 2
Stmm3 4 63365294 to 91117397 27752103 QTL skin tumor modifier of MSM 3
Akna 4 63367125 to 63403354 36229 - protein coding gene AT-hook transcription factor
Tssr42037 4 63367521 to 63367527 6 - TSS region transcription start site region 42037
Cpgi14369 4 63377038 to 63377243 205 CpG island CpG island 14369
Tssr37552 4 63377106 to 63377142 36 + TSS region transcription start site region 37552
Tssr42038 4 63381215 to 63381253 38 - TSS region transcription start site region 42038
Tssr37553 4 63381342 to 63381354 12 + TSS region transcription start site region 37553
Aknaos 4 63381358 to 63394018 12660 + antisense lncRNA gene AT-hook transcription factor, opposite strand
Tssr37554 4 63381368 to 63381373 5 + TSS region transcription start site region 37554
Tssr37555 4 63385477 to 63385488 11 + TSS region transcription start site region 37555
Tssr37556 4 63386010 to 63386028 18 + TSS region transcription start site region 37556
Tssr42039 4 63387073 to 63387083 10 - TSS region transcription start site region 42039
Tssr37557 4 63395157 to 63395167 10 + TSS region transcription start site region 37557
Tssr37558 4 63399519 to 63399522 3 + TSS region transcription start site region 37558
Tssr42040 4 63401670 to 63401701 31 - TSS region transcription start site region 42040
Tssr42041 4 63403245 to 63403259 14 - TSS region transcription start site region 42041
Tssr42042 4 63403269 to 63403274 5 - TSS region transcription start site region 42042
Tssr42043 4 63403277 to 63403286 9 - TSS region transcription start site region 42043
Tssr42044 4 63403330 to 63403350 20 - TSS region transcription start site region 42044
Tssr42045 4 63403361 to 63403376 15 - TSS region transcription start site region 42045
Tssr37559 4 63409605 to 63409627 22 + TSS region transcription start site region 37559
Cpgi14370 4 63409873 to 63410876 1003 CpG island CpG island 14370
Tssr42046 4 63409993 to 63410004 11 - TSS region transcription start site region 42046
Tssr42047 4 63410010 to 63410024 14 - TSS region transcription start site region 42047
Tssr42048 4 63410188 to 63410212 24 - TSS region transcription start site region 42048
Tssr42049 4 63410214 to 63410231 17 - TSS region transcription start site region 42049
Tssr42050 4 63410683 to 63410702 19 - TSS region transcription start site region 42050
Tssr42051 4 63410705 to 63410726 21 - TSS region transcription start site region 42051
Tssr42052 4 63410745 to 63410757 12 - TSS region transcription start site region 42052
Whrn 4 63414910 to 63495991 81081 - protein coding gene whirlin
Tssr42053 4 63418701 to 63418711 10 - TSS region transcription start site region 42053