Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:62409328-62939355

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prpf4 4 62408797 to 62426990 18193 + protein coding gene pre-mRNA processing factor 4
Tssr37491 4 62409844 to 62409847 3 + TSS region transcription start site region 37491
Rnf183 4 62427536 to 62434726 7190 - protein coding gene ring finger protein 183
Cpgi14358 4 62428071 to 62428247 176 CpG island CpG island 14358
Gm30589 4 62434605 to 62443851 9246 + lncRNA gene predicted gene, 30589
Tssr42001 4 62434633 to 62434644 11 - TSS region transcription start site region 42001
Tssr42002 4 62434684 to 62434696 12 - TSS region transcription start site region 42002
Tssr42003 4 62434722 to 62434738 16 - TSS region transcription start site region 42003
Wdr31 4 62448653 to 62470896 22243 - protein coding gene WD repeat domain 31
Tssr42004 4 62468880 to 62468903 23 - TSS region transcription start site region 42004
Tssr42005 4 62468907 to 62468923 16 - TSS region transcription start site region 42005
Cpgi14359 4 62470629 to 62471166 537 CpG island CpG island 14359
Tssr42006 4 62470868 to 62470922 54 - TSS region transcription start site region 42006
Tssr42007 4 62470924 to 62470932 8 - TSS region transcription start site region 42007
Cpgi14360 4 62479911 to 62480700 789 CpG island CpG island 14360
Tssr37492 4 62480025 to 62480098 73 + TSS region transcription start site region 37492
Bspry 4 62480053 to 62497298 17245 + protein coding gene B-box and SPRY domain containing
Hdhd3 4 62499054 to 62502200 3146 - protein coding gene haloacid dehalogenase-like hydrolase domain containing 3
Cpgi14361 4 62501916 to 62502510 594 CpG island CpG island 14361
Tssr42008 4 62502176 to 62502182 6 - TSS region transcription start site region 42008
Tssr42009 4 62502200 to 62502226 26 - TSS region transcription start site region 42009
Tssr42010 4 62502233 to 62502260 27 - TSS region transcription start site region 42010
Cms1 4 62509169 to 62519918 10749 QTL resistance to Coccidioides immitis 1
Alad 4 62509169 to 62519918 10749 - protein coding gene aminolevulinate, delta-, dehydratase
Tssr42011 4 62514178 to 62514220 42 - TSS region transcription start site region 42011
Tssr42012 4 62516668 to 62516703 35 - TSS region transcription start site region 42012
Tssr42013 4 62516706 to 62516721 15 - TSS region transcription start site region 42013
Tssr42014 4 62516743 to 62516752 9 - TSS region transcription start site region 42014
Cpgi14362 4 62519543 to 62520273 730 CpG island CpG island 14362
Tssr42015 4 62519885 to 62519967 82 - TSS region transcription start site region 42015
Tssr42016 4 62520021 to 62520035 14 - TSS region transcription start site region 42016
Tssr42017 4 62520054 to 62520079 25 - TSS region transcription start site region 42017
Pole3 4 62523798 to 62525014 1216 - protein coding gene polymerase (DNA directed), epsilon 3 (p17 subunit)
Tssr42018 4 62524396 to 62524412 16 - TSS region transcription start site region 42018
Cpgi14363 4 62524516 to 62525572 1056 CpG island CpG island 14363
Tssr42019 4 62524782 to 62524805 23 - TSS region transcription start site region 42019
Tssr42020 4 62524844 to 62524850 6 - TSS region transcription start site region 42020
Tssr42021 4 62525036 to 62525080 44 - TSS region transcription start site region 42021
4933430I17Rik 4 62525369 to 62547993 22624 + protein coding gene RIKEN cDNA 4933430I17 gene
Tssr37493 4 62525618 to 62525622 4 + TSS region transcription start site region 37493
Tssr37494 4 62543312 to 62543342 30 + TSS region transcription start site region 37494
Tssr37495 4 62559803 to 62559808 5 + TSS region transcription start site region 37495
Tssr37496 4 62559814 to 62559821 7 + TSS region transcription start site region 37496
Tssr37497 4 62559825 to 62559838 13 + TSS region transcription start site region 37497
Rgs3 4 62559835 to 62703019 143184 + protein coding gene regulator of G-protein signaling 3
Cpgi14364 4 62583182 to 62583929 747 CpG island CpG island 14364
Tssr37498 4 62583501 to 62583564 63 + TSS region transcription start site region 37498
Tssr37499 4 62583568 to 62583585 17 + TSS region transcription start site region 37499
Tssr37500 4 62615271 to 62615286 15 + TSS region transcription start site region 37500
Tssr37501 4 62619515 to 62619530 15 + TSS region transcription start site region 37501
Tssr37502 4 62619648 to 62619669 21 + TSS region transcription start site region 37502
Tssr37503 4 62619682 to 62619719 37 + TSS region transcription start site region 37503
Tssr37504 4 62619720 to 62619740 20 + TSS region transcription start site region 37504
Gm11209 4 62627677 to 62633712 6035 - antisense lncRNA gene predicted gene 11209
Tssr37505 4 62634133 to 62634148 15 + TSS region transcription start site region 37505
Tssr37506 4 62634279 to 62634294 15 + TSS region transcription start site region 37506
Tssr37507 4 62634366 to 62634388 22 + TSS region transcription start site region 37507
Tssr37508 4 62634397 to 62634413 16 + TSS region transcription start site region 37508
Tssr37509 4 62634440 to 62634487 47 + TSS region transcription start site region 37509
Tssr37510 4 62638576 to 62638584 8 + TSS region transcription start site region 37510
Tssr37511 4 62652458 to 62652477 19 + TSS region transcription start site region 37511
Tssr37512 4 62652481 to 62652497 16 + TSS region transcription start site region 37512
Tssr37513 4 62663620 to 62663664 44 + TSS region transcription start site region 37513
Tssr37514 4 62663683 to 62663709 26 + TSS region transcription start site region 37514
Tssr37515 4 62668864 to 62668915 51 + TSS region transcription start site region 37515
Tssr37516 4 62674201 to 62674238 37 + TSS region transcription start site region 37516
Tssr37517 4 62674328 to 62674355 27 + TSS region transcription start site region 37517
Tssr37518 4 62685391 to 62685416 25 + TSS region transcription start site region 37518
Tssr37519 4 62699669 to 62699689 20 + TSS region transcription start site region 37519
Gm11210 4 62705981 to 62725737 19756 + lincRNA gene predicted gene 11210
Gm11211 4 62723516 to 62727537 4021 - lincRNA gene predicted gene 11211
Tssr42022 4 62733444 to 62733447 3 - TSS region transcription start site region 42022
Gm30699 4 62765215 to 62775577 10362 - lncRNA gene predicted gene, 30699
Gm24117 4 62812428 to 62812560 132 + snoRNA gene predicted gene, 24117
Tssr37520 4 62879698 to 62879699 1 + TSS region transcription start site region 37520
Gm25391 4 62939341 to 62939474 133 + snoRNA gene predicted gene, 25391