Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:61270745-65550757

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405 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lyr2 4 14010457 to 63365441 49354984 QTL lymphoma resistance 2
Habiir2 4 39452126 to 63365441 23913315 QTL hyperoxic acute lung injury imprinted region 2
Mup14 4 61300037 to 61303998 3961 - protein coding gene major urinary protein 14
Mup-ps11 4 61320765 to 61326376 5611 + pseudogene major urinary protein, pseudogene 11
Mup15 4 61435787 to 61439705 3918 - protein coding gene major urinary protein 15
Mup-ps12 4 61452244 to 61454952 2708 + pseudogene major urinary protein, pseudogene 12
Mup16 4 61515592 to 61519501 3909 - protein coding gene major urinary protein 16
Mup-ps13 4 61534230 to 61536973 2743 + pseudogene major urinary protein, pseudogene 13
Mup17 4 61591929 to 61595844 3915 - protein coding gene major urinary protein 17
Mup-ps14 4 61608292 to 61610983 2691 + pseudogene major urinary protein, pseudogene 14
Mup18 4 61670177 to 61674094 3917 - protein coding gene major urinary protein 18
Tssr41960 4 61674094 to 61674097 3 - TSS region transcription start site region 41960
Mup-ps15 4 61698841 to 61701544 2703 + pseudogene major urinary protein, pseudogene 15
Gm12573 4 61750075 to 61750360 285 + pseudogene predicted gene 12573
Mup19 4 61778324 to 61782231 3907 - protein coding gene major urinary protein 19
Tssr41961 4 61780811 to 61780846 35 - TSS region transcription start site region 41961
Tssr41962 4 61782222 to 61782226 4 - TSS region transcription start site region 41962
Gm13775 4 61783123 to 61801286 18163 + unclassified non-coding RNA gene predicted gene 13775
Mup-ps16 4 61797482 to 61800237 2755 + pseudogene major urinary protein, pseudogene 16
Mup5 4 61831319 to 61835233 3914 - protein coding gene major urinary protein 5
Tssr41963 4 61835185 to 61835190 5 - TSS region transcription start site region 41963
Mup-ps23 4 61855404 to 61856554 1150 - pseudogene major urinary protein, pseudogene 23
Tssr41964 4 61855788 to 61855793 5 - TSS region transcription start site region 41964
Mup-ps17 4 61857321 to 61857876 555 - pseudogene major urinary protein, pseudogene 17
Mup-ps18 4 61874700 to 61883296 8596 - pseudogene major urinary protein, pseudogene 18
Mup-ps19 4 61957149 to 61959911 2762 - pseudogene major urinary protein, pseudogene 19
Mup-ps20 4 62012412 to 62014857 2445 - pseudogene major urinary protein, pseudogene 20
Mup-ps21 4 62029342 to 62031662 2320 - pseudogene major urinary protein, pseudogene 21
Mup20 4 62050234 to 62054158 3924 - protein coding gene major urinary protein 20
Tssr41965 4 62054112 to 62054117 5 - TSS region transcription start site region 41965
Mup3 4 62083476 to 62087342 3866 - protein coding gene major urinary protein 3
Tssr41966 4 62085990 to 62085997 7 - TSS region transcription start site region 41966
Tssr41967 4 62086006 to 62086032 26 - TSS region transcription start site region 41967
Tssr41968 4 62087288 to 62087306 18 - TSS region transcription start site region 41968
Tssr1190 4 62088247 to 62088264 17 + TSS region transcription start site region 1190
Gm12909 4 62088288 to 62090524 2236 + antisense lncRNA gene predicted gene 12909
Gm12910 4 62112931 to 62120929 7998 + antisense lncRNA gene predicted gene 12910
Mup21 4 62147932 to 62150863 2931 - protein coding gene major urinary protein 21
Tssr41969 4 62150810 to 62150826 16 - TSS region transcription start site region 41969
Zfp37 4 62189537 to 62208729 19192 - protein coding gene zinc finger protein 37
Tssr41970 4 62205119 to 62205135 16 - TSS region transcription start site region 41970
Tssr41971 4 62207913 to 62207926 13 - TSS region transcription start site region 41971
Tssr37467 4 62208034 to 62208041 7 + TSS region transcription start site region 37467
Cpgi14353 4 62208088 to 62208759 671 CpG island CpG island 14353
Tssr41972 4 62208413 to 62208424 11 - TSS region transcription start site region 41972
Tssr41973 4 62208426 to 62208487 61 - TSS region transcription start site region 41973
Tssr41974 4 62208539 to 62208561 22 - TSS region transcription start site region 41974
Tssr41975 4 62208647 to 62208670 23 - TSS region transcription start site region 41975
Tssr41976 4 62208674 to 62208698 24 - TSS region transcription start site region 41976
Tssr41977 4 62208699 to 62208717 18 - TSS region transcription start site region 41977
Tssr41978 4 62208723 to 62208737 14 - TSS region transcription start site region 41978
Gm30451 4 62208924 to 62209402 478 + lncRNA gene predicted gene, 30451
Tssr41979 4 62220299 to 62220303 4 - TSS region transcription start site region 41979
Tssr41980 4 62228487 to 62228495 8 - TSS region transcription start site region 41980
Tssr41981 4 62228521 to 62228535 14 - TSS region transcription start site region 41981
Tssr41982 4 62228544 to 62228557 13 - TSS region transcription start site region 41982
Tssr37468 4 62230981 to 62231007 26 + TSS region transcription start site region 37468
Gm23148 4 62264314 to 62264420 106 + snRNA gene predicted gene, 23148
Tssr1191 4 62280378 to 62280379 1 + TSS region transcription start site region 1191
Slc31a2 4 62280393 to 62298412 18019 + protein coding gene solute carrier family 31, member 2
Tssr37469 4 62280399 to 62280421 22 + TSS region transcription start site region 37469
Tssr37470 4 62281606 to 62281640 34 + TSS region transcription start site region 37470
Tssr41983 4 62285698 to 62285705 7 - TSS region transcription start site region 41983
Cpgi14354 4 62286113 to 62286845 732 CpG island CpG island 14354
Tssr37471 4 62286424 to 62286438 14 + TSS region transcription start site region 37471
Tssr37472 4 62286441 to 62286516 75 + TSS region transcription start site region 37472
Tssr37473 4 62294990 to 62295009 19 + TSS region transcription start site region 37473
Tssr37474 4 62295158 to 62295169 11 + TSS region transcription start site region 37474
Tssr37475 4 62297999 to 62298024 25 + TSS region transcription start site region 37475
Tssr37476 4 62298028 to 62298042 14 + TSS region transcription start site region 37476
Tssr37477 4 62298076 to 62298087 11 + TSS region transcription start site region 37477
Tssr37478 4 62298132 to 62298144 12 + TSS region transcription start site region 37478
Tssr37479 4 62298164 to 62298209 45 + TSS region transcription start site region 37479
Tssr37480 4 62298215 to 62298235 20 + TSS region transcription start site region 37480
Tssr41984 4 62298247 to 62298280 33 - TSS region transcription start site region 41984
Fkbp15 4 62300342 to 62360548 60206 - protein coding gene FK506 binding protein 15
Tssr41985 4 62313919 to 62313941 22 - TSS region transcription start site region 41985
Tssr37481 4 62314033 to 62314050 17 + TSS region transcription start site region 37481
Tssr37482 4 62314063 to 62314073 10 + TSS region transcription start site region 37482
Tssr41986 4 62326088 to 62326116 28 - TSS region transcription start site region 41986
Tssr41987 4 62329390 to 62329399 9 - TSS region transcription start site region 41987
Tssr41988 4 62329416 to 62329427 11 - TSS region transcription start site region 41988
Tssr41989 4 62329446 to 62329467 21 - TSS region transcription start site region 41989
Tssr41990 4 62329527 to 62329560 33 - TSS region transcription start site region 41990
Tssr41991 4 62337117 to 62337143 26 - TSS region transcription start site region 41991
Tssr41992 4 62348126 to 62348130 4 - TSS region transcription start site region 41992
Tssr41993 4 62359129 to 62359133 4 - TSS region transcription start site region 41993
Cpgi14355 4 62360066 to 62361101 1035 CpG island CpG island 14355
Tssr37483 4 62360185 to 62360227 42 + TSS region transcription start site region 37483
Tssr41994 4 62360329 to 62360334 5 - TSS region transcription start site region 41994
Tssr41995 4 62360419 to 62360433 14 - TSS region transcription start site region 41995
Tssr41996 4 62360436 to 62360511 75 - TSS region transcription start site region 41996
Tssr41997 4 62360524 to 62360552 28 - TSS region transcription start site region 41997
Tssr41998 4 62360556 to 62360576 20 - TSS region transcription start site region 41998
Tssr37484 4 62360695 to 62360758 63 + TSS region transcription start site region 37484
Slc31a1 4 62360727 to 62391769 31042 + protein coding gene solute carrier family 31, member 1
Tssr37485 4 62361582 to 62361587 5 + TSS region transcription start site region 37485
Tssr37486 4 62380015 to 62380017 2 + TSS region transcription start site region 37486
Tssr37487 4 62388594 to 62388624 30 + TSS region transcription start site region 37487
Tssr37488 4 62388723 to 62388744 21 + TSS region transcription start site region 37488
Cdc26 4 62393805 to 62408641 14836 - protein coding gene cell division cycle 26
Cpgi14356 4 62407826 to 62408061 235 CpG island CpG island 14356
Tssr37489 4 62407837 to 62407856 19 + TSS region transcription start site region 37489
Cpgi14357 4 62408322 to 62409182 860 CpG island CpG island 14357
Tssr41999 4 62408618 to 62408643 25 - TSS region transcription start site region 41999
Tssr42000 4 62408647 to 62408658 11 - TSS region transcription start site region 42000
Tssr37490 4 62408770 to 62408865 95 + TSS region transcription start site region 37490
Prpf4 4 62408797 to 62426990 18193 + protein coding gene pre-mRNA processing factor 4
Tssr37491 4 62409844 to 62409847 3 + TSS region transcription start site region 37491
Rnf183 4 62427536 to 62434726 7190 - protein coding gene ring finger protein 183
Cpgi14358 4 62428071 to 62428247 176 CpG island CpG island 14358
Gm30589 4 62434605 to 62443851 9246 + lncRNA gene predicted gene, 30589
Tssr42001 4 62434633 to 62434644 11 - TSS region transcription start site region 42001
Tssr42002 4 62434684 to 62434696 12 - TSS region transcription start site region 42002
Tssr42003 4 62434722 to 62434738 16 - TSS region transcription start site region 42003
Wdr31 4 62448653 to 62470896 22243 - protein coding gene WD repeat domain 31
Tssr42004 4 62468880 to 62468903 23 - TSS region transcription start site region 42004
Tssr42005 4 62468907 to 62468923 16 - TSS region transcription start site region 42005
Cpgi14359 4 62470629 to 62471166 537 CpG island CpG island 14359
Tssr42006 4 62470868 to 62470922 54 - TSS region transcription start site region 42006
Tssr42007 4 62470924 to 62470932 8 - TSS region transcription start site region 42007
Cpgi14360 4 62479911 to 62480700 789 CpG island CpG island 14360
Tssr37492 4 62480025 to 62480098 73 + TSS region transcription start site region 37492
Bspry 4 62480053 to 62497298 17245 + protein coding gene B-box and SPRY domain containing
Hdhd3 4 62499054 to 62502200 3146 - protein coding gene haloacid dehalogenase-like hydrolase domain containing 3
Cpgi14361 4 62501916 to 62502510 594 CpG island CpG island 14361
Tssr42008 4 62502176 to 62502182 6 - TSS region transcription start site region 42008
Tssr42009 4 62502200 to 62502226 26 - TSS region transcription start site region 42009
Tssr42010 4 62502233 to 62502260 27 - TSS region transcription start site region 42010
Cms1 4 62509169 to 62519918 10749 QTL resistance to Coccidioides immitis 1
Alad 4 62509169 to 62519918 10749 - protein coding gene aminolevulinate, delta-, dehydratase
Tssr42011 4 62514178 to 62514220 42 - TSS region transcription start site region 42011
Tssr42012 4 62516668 to 62516703 35 - TSS region transcription start site region 42012
Tssr42013 4 62516706 to 62516721 15 - TSS region transcription start site region 42013
Tssr42014 4 62516743 to 62516752 9 - TSS region transcription start site region 42014
Cpgi14362 4 62519543 to 62520273 730 CpG island CpG island 14362
Tssr42015 4 62519885 to 62519967 82 - TSS region transcription start site region 42015
Tssr42016 4 62520021 to 62520035 14 - TSS region transcription start site region 42016
Tssr42017 4 62520054 to 62520079 25 - TSS region transcription start site region 42017
Pole3 4 62523798 to 62525014 1216 - protein coding gene polymerase (DNA directed), epsilon 3 (p17 subunit)
Tssr42018 4 62524396 to 62524412 16 - TSS region transcription start site region 42018
Cpgi14363 4 62524516 to 62525572 1056 CpG island CpG island 14363
Tssr42019 4 62524782 to 62524805 23 - TSS region transcription start site region 42019
Tssr42020 4 62524844 to 62524850 6 - TSS region transcription start site region 42020
Tssr42021 4 62525036 to 62525080 44 - TSS region transcription start site region 42021
4933430I17Rik 4 62525369 to 62547993 22624 + protein coding gene RIKEN cDNA 4933430I17 gene
Tssr37493 4 62525618 to 62525622 4 + TSS region transcription start site region 37493
Tssr37494 4 62543312 to 62543342 30 + TSS region transcription start site region 37494
Tssr37495 4 62559803 to 62559808 5 + TSS region transcription start site region 37495
Tssr37496 4 62559814 to 62559821 7 + TSS region transcription start site region 37496
Tssr37497 4 62559825 to 62559838 13 + TSS region transcription start site region 37497
Rgs3 4 62559835 to 62703019 143184 + protein coding gene regulator of G-protein signaling 3
Cpgi14364 4 62583182 to 62583929 747 CpG island CpG island 14364
Tssr37498 4 62583501 to 62583564 63 + TSS region transcription start site region 37498
Tssr37499 4 62583568 to 62583585 17 + TSS region transcription start site region 37499
Tssr37500 4 62615271 to 62615286 15 + TSS region transcription start site region 37500
Tssr37501 4 62619515 to 62619530 15 + TSS region transcription start site region 37501
Tssr37502 4 62619648 to 62619669 21 + TSS region transcription start site region 37502
Tssr37503 4 62619682 to 62619719 37 + TSS region transcription start site region 37503
Tssr37504 4 62619720 to 62619740 20 + TSS region transcription start site region 37504
Gm11209 4 62627677 to 62633712 6035 - antisense lncRNA gene predicted gene 11209
Tssr37505 4 62634133 to 62634148 15 + TSS region transcription start site region 37505
Tssr37506 4 62634279 to 62634294 15 + TSS region transcription start site region 37506
Tssr37507 4 62634366 to 62634388 22 + TSS region transcription start site region 37507
Tssr37508 4 62634397 to 62634413 16 + TSS region transcription start site region 37508
Tssr37509 4 62634440 to 62634487 47 + TSS region transcription start site region 37509
Tssr37510 4 62638576 to 62638584 8 + TSS region transcription start site region 37510
Tssr37511 4 62652458 to 62652477 19 + TSS region transcription start site region 37511
Tssr37512 4 62652481 to 62652497 16 + TSS region transcription start site region 37512
Tssr37513 4 62663620 to 62663664 44 + TSS region transcription start site region 37513
Tssr37514 4 62663683 to 62663709 26 + TSS region transcription start site region 37514
Tssr37515 4 62668864 to 62668915 51 + TSS region transcription start site region 37515
Tssr37516 4 62674201 to 62674238 37 + TSS region transcription start site region 37516
Tssr37517 4 62674328 to 62674355 27 + TSS region transcription start site region 37517
Tssr37518 4 62685391 to 62685416 25 + TSS region transcription start site region 37518
Tssr37519 4 62699669 to 62699689 20 + TSS region transcription start site region 37519
Gm11210 4 62705981 to 62725737 19756 + lincRNA gene predicted gene 11210
Gm11211 4 62723516 to 62727537 4021 - lincRNA gene predicted gene 11211
Tssr42022 4 62733444 to 62733447 3 - TSS region transcription start site region 42022
Gm30699 4 62765215 to 62775577 10362 - lncRNA gene predicted gene, 30699
Gm24117 4 62812428 to 62812560 132 + snoRNA gene predicted gene, 24117
Tssr37520 4 62879698 to 62879699 1 + TSS region transcription start site region 37520
Gm25391 4 62939341 to 62939474 133 + snoRNA gene predicted gene, 25391
Gm11481 4 62939521 to 62939775 254 + pseudogene predicted gene 11481
Gm11480 4 62939912 to 62940570 658 + pseudogene predicted gene 11480
Cpgi14365 4 62965182 to 62966101 919 CpG island CpG island 14365
Tssr37521 4 62965560 to 62965617 57 + TSS region transcription start site region 37521
Zfp618 4 62965573 to 63139708 174135 + protein coding gene zinc finger protein 618
Tssr37522 4 62965648 to 62965671 23 + TSS region transcription start site region 37522
Tssr37523 4 62966155 to 62966159 4 + TSS region transcription start site region 37523
Tssr37524 4 62970846 to 62970851 5 + TSS region transcription start site region 37524
Gm30764 4 62978667 to 62979625 958 - lncRNA gene predicted gene, 30764
Tssr42023 4 62979573 to 62979582 9 - TSS region transcription start site region 42023
Tssr37525 4 62979684 to 62979708 24 + TSS region transcription start site region 37525
Tssr37526 4 63018343 to 63018347 4 + TSS region transcription start site region 37526
Tssr37527 4 63086968 to 63086973 5 + TSS region transcription start site region 37527
Cpgi14366 4 63115242 to 63115453 211 CpG island CpG island 14366
Ambp 4 63143275 to 63154172 10897 - protein coding gene alpha 1 microglobulin/bikunin precursor
Tssr42024 4 63149450 to 63149466 16 - TSS region transcription start site region 42024
Tssr37528 4 63150350 to 63150360 10 + TSS region transcription start site region 37528