Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:59518549-60491214

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ptbp3 4 59471868 to 59549364 77496 - protein coding gene polypyrimidine tract binding protein 3
D4Mit243 4 59529357 to 59529501 144 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 243
Gm12529 4 59532747 to 59533014 267 + pseudogene predicted gene 12529
Tssr41945 4 59538075 to 59538087 12 - TSS region transcription start site region 41945
Cpgi14347 4 59548532 to 59549915 1383 CpG island CpG island 14347
1700018M17Rik 4 59549154 to 59549625 471 + pseudogene RIKEN cDNA 1700018M17 gene
Tssr41946 4 59549275 to 59549303 28 - TSS region transcription start site region 41946
Tssr41947 4 59549314 to 59549325 11 - TSS region transcription start site region 41947
D4Mit44 4 59552512 to 59552657 145 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 44
Tssr37432 4 59579020 to 59579025 5 + TSS region transcription start site region 37432
Cpgi14348 4 59581140 to 59582120 980 CpG island CpG island 14348
Tssr41948 4 59581427 to 59581438 11 - TSS region transcription start site region 41948
Tssr37433 4 59581522 to 59581532 10 + TSS region transcription start site region 37433
Tssr37434 4 59581543 to 59581554 11 + TSS region transcription start site region 37434
Tssr37435 4 59581557 to 59581568 11 + TSS region transcription start site region 37435
Hsdl2 4 59581563 to 59618689 37126 + protein coding gene hydroxysteroid dehydrogenase like 2
Tssr37436 4 59581589 to 59581600 11 + TSS region transcription start site region 37436
Tssr37437 4 59581617 to 59581629 12 + TSS region transcription start site region 37437
Tssr37438 4 59581675 to 59581682 7 + TSS region transcription start site region 37438
Tssr37439 4 59581697 to 59581714 17 + TSS region transcription start site region 37439
Tssr37440 4 59581721 to 59581732 11 + TSS region transcription start site region 37440
Tssr37441 4 59618285 to 59618289 4 + TSS region transcription start site region 37441
Cpgi14349 4 59625558 to 59627003 1445 CpG island CpG island 14349
Tssr37442 4 59626189 to 59626253 64 + TSS region transcription start site region 37442
E130308A19Rik 4 59626200 to 59757649 131449 + protein coding gene RIKEN cDNA E130308A19 gene
Tssr37443 4 59633426 to 59633430 4 + TSS region transcription start site region 37443
Tssr37444 4 59674003 to 59674013 10 + TSS region transcription start site region 37444
Tssr37445 4 59728046 to 59728051 5 + TSS region transcription start site region 37445
2700054B07Rik 4 59769123 to 59769390 267 unclassified gene RIKEN cDNA 2700054B07 gene
Inip 4 59769642 to 59783855 14213 - protein coding gene INTS3 and NABP interacting protein
Tssr41949 4 59781371 to 59781375 4 - TSS region transcription start site region 41949
Cpgi14350 4 59783281 to 59784108 827 CpG island CpG island 14350
Tssr41950 4 59783800 to 59783876 76 - TSS region transcription start site region 41950
Tssr37446 4 59805003 to 59805012 9 + TSS region transcription start site region 37446
Cpgi14351 4 59805295 to 59806581 1286 CpG island CpG island 14351
Tssr37447 4 59805829 to 59805914 85 + TSS region transcription start site region 37447
Snx30 4 59805840 to 59904737 98897 + protein coding gene sorting nexin family member 30
Tssr37448 4 59806817 to 59806839 22 + TSS region transcription start site region 37448
D4Mit217 4 59833227 to 59833362 135 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 217
Gm12543 4 59833674 to 59834216 542 + pseudogene predicted gene 12543
Tssr37449 4 59868484 to 59868497 13 + TSS region transcription start site region 37449
Tssr37450 4 59873767 to 59873774 7 + TSS region transcription start site region 37450
Tssr37451 4 59880024 to 59880029 5 + TSS region transcription start site region 37451
Tssr37452 4 59884637 to 59884642 5 + TSS region transcription start site region 37452
Gm12542 4 59889986 to 59894924 4938 - antisense lncRNA gene predicted gene 12542
Tssr1189 4 59890786 to 59890801 15 + TSS region transcription start site region 1189
Tssr37453 4 59905123 to 59905135 12 + TSS region transcription start site region 37453
Slc46a2 4 59905899 to 59915056 9157 - protein coding gene solute carrier family 46, member 2
Tssr41951 4 59914256 to 59914259 3 - TSS region transcription start site region 41951
Cpgi14352 4 59914262 to 59914825 563 CpG island CpG island 14352
Tssr41952 4 59914850 to 59914860 10 - TSS region transcription start site region 41952
Tssr41953 4 59914950 to 59914961 11 - TSS region transcription start site region 41953
Tssr41954 4 59915035 to 59915063 28 - TSS region transcription start site region 41954
Tssr37454 4 59933871 to 59933881 10 + TSS region transcription start site region 37454
Tssr37455 4 59944476 to 59944497 21 + TSS region transcription start site region 37455
Mup4 4 59956806 to 59960669 3863 - protein coding gene major urinary protein 4
Tssr41955 4 59960659 to 59960668 9 - TSS region transcription start site region 41955
Tssr37456 4 59964132 to 59964140 8 + TSS region transcription start site region 37456
Tssr37457 4 59964175 to 59964186 11 + TSS region transcription start site region 37457
Tssr37458 4 59964189 to 59964198 9 + TSS region transcription start site region 37458
Tssr37459 4 59964209 to 59964250 41 + TSS region transcription start site region 37459
Tssr37460 4 59964272 to 59964283 11 + TSS region transcription start site region 37460
Tssr37461 4 60003478 to 60003486 8 + TSS region transcription start site region 37461
Mup6 4 60003549 to 60006214 2665 + protein coding gene major urinary protein 6
Tssr37462 4 60004768 to 60004793 25 + TSS region transcription start site region 37462
Tssr37463 4 60004834 to 60004865 31 + TSS region transcription start site region 37463
Tssr37464 4 60005492 to 60005502 10 + TSS region transcription start site region 37464
Tssr37465 4 60005914 to 60005922 8 + TSS region transcription start site region 37465
Tssr37466 4 60006179 to 60006192 13 + TSS region transcription start site region 37466
Mup7 4 60066469 to 60070475 4006 - protein coding gene major urinary protein 7
Tssr164684 4 60070461 to 60070481 20 - TSS region transcription start site region 164684
Mup-ps1 4 60085840 to 60088577 2737 + pseudogene major urinary protein, pseudogene 1
Mup2 4 60135913 to 60139872 3959 - protein coding gene major urinary protein 2
Mup-ps2 4 60155274 to 60157966 2692 + pseudogene major urinary protein, pseudogene 2
Mup8 4 60218621 to 60222599 3978 - protein coding gene major urinary protein 8
Mup-ps3 4 60239378 to 60244889 5511 + pseudogene major urinary protein, pseudogene 3
Mup-ps29 4 60384494 to 60384695 201 + pseudogene major urinary protein, pseudogene 29
Mup-ps28 4 60389861 to 60390149 288 + pseudogene major urinary protein, pseudogene 28
Mup9 4 60418046 to 60421952 3906 - protein coding gene major urinary protein 9
Tssr41956 4 60421948 to 60421955 7 - TSS region transcription start site region 41956
Mup-ps4 4 60437361 to 60440063 2702 + pseudogene major urinary protein, pseudogene 4
Mup-ps26 4 60479408 to 60479609 201 + pseudogene major urinary protein, pseudogene 26