Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:57742796-58506596

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pakap 4 57568248 to 57896984 328736 + protein coding gene paralemmin A kinase anchor protein
Gm35099 4 57730081 to 57756022 25941 - lncRNA gene predicted gene, 35099
Gm12526 4 57757739 to 57763901 6162 - unclassified non-coding RNA gene predicted gene 12526
Gm24277 4 57762607 to 57762710 103 + snRNA gene predicted gene, 24277
Tssr1179 4 57779069 to 57779073 4 + TSS region transcription start site region 1179
Tssr37375 4 57781165 to 57781170 5 + TSS region transcription start site region 37375
Cpgi14333 4 57782108 to 57782463 355 CpG island CpG island 14333
Tssr37376 4 57782153 to 57782186 33 + TSS region transcription start site region 37376
Tssr37377 4 57782188 to 57782205 17 + TSS region transcription start site region 37377
Cpgi14334 4 57782867 to 57783243 376 CpG island CpG island 14334
Tssr37378 4 57792382 to 57792386 4 + TSS region transcription start site region 37378
Tssr37379 4 57813260 to 57813261 1 + TSS region transcription start site region 37379
Tssr37380 4 57821081 to 57821101 20 + TSS region transcription start site region 37380
Tssr37381 4 57845219 to 57845238 19 + TSS region transcription start site region 37381
Tssr37382 4 57845240 to 57845265 25 + TSS region transcription start site region 37382
Akap2 4 57845248 to 57896984 51736 + protein coding gene A kinase (PRKA) anchor protein 2
Tssr1180 4 57845268 to 57845273 5 + TSS region transcription start site region 1180
Tssr37383 4 57845277 to 57845288 11 + TSS region transcription start site region 37383
Tssr37384 4 57849156 to 57849160 4 + TSS region transcription start site region 37384
Tssr37385 4 57854711 to 57854735 24 + TSS region transcription start site region 37385
Tssr37386 4 57854738 to 57854754 16 + TSS region transcription start site region 37386
Tssr37387 4 57872809 to 57872817 8 + TSS region transcription start site region 37387
Gm26138 4 57877389 to 57877495 106 - snRNA gene predicted gene, 26138
Tssr37388 4 57877483 to 57877486 3 + TSS region transcription start site region 37388
Tssr1181 4 57887579 to 57887590 11 + TSS region transcription start site region 1181
Tssr37389 4 57892920 to 57892941 21 + TSS region transcription start site region 37389
Tssr37390 4 57892950 to 57892968 18 + TSS region transcription start site region 37390
Tssr37391 4 57892997 to 57893008 11 + TSS region transcription start site region 37391
Tssr37392 4 57893063 to 57893104 41 + TSS region transcription start site region 37392
Tssr37393 4 57893720 to 57893733 13 + TSS region transcription start site region 37393
Tssr37394 4 57893928 to 57893940 12 + TSS region transcription start site region 37394
Tssr37395 4 57894160 to 57894179 19 + TSS region transcription start site region 37395
D630039A03Rik 4 57908483 to 57916297 7814 - protein coding gene RIKEN cDNA D630039A03 gene
D4Mit295 4 57913346 to 57913446 100 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 295
Tssr41855 4 57915725 to 57915737 12 - TSS region transcription start site region 41855
Tssr41856 4 57915740 to 57915774 34 - TSS region transcription start site region 41856
Tssr41857 4 57916161 to 57916175 14 - TSS region transcription start site region 41857
Tssr41858 4 57916224 to 57916242 18 - TSS region transcription start site region 41858
Tssr41859 4 57916283 to 57916306 23 - TSS region transcription start site region 41859
Tssr41860 4 57916311 to 57916324 13 - TSS region transcription start site region 41860
Tssr41861 4 57916441 to 57916455 14 - TSS region transcription start site region 41861
Tssr1182 4 57916507 to 57916533 26 - TSS region transcription start site region 1182
Gm42293 4 57916639 to 57918420 1781 + lncRNA gene predicted gene, 42293
Gm42292 4 57921421 to 57923431 2010 - lncRNA gene predicted gene, 42292
Txn1 4 57943373 to 57956411 13038 - protein coding gene thioredoxin 1
Tssr41862 4 57943805 to 57943829 24 - TSS region transcription start site region 41862
Tssr41863 4 57951842 to 57951860 18 - TSS region transcription start site region 41863
Tssr41864 4 57951861 to 57951894 33 - TSS region transcription start site region 41864
Tssr41865 4 57953520 to 57953533 13 - TSS region transcription start site region 41865
Cpgi14335 4 57955516 to 57956951 1435 CpG island CpG island 14335
Tssr41866 4 57956283 to 57956298 15 - TSS region transcription start site region 41866
Tssr1183 4 57956311 to 57956358 47 - TSS region transcription start site region 1183
Tssr1184 4 57956416 to 57956424 8 - TSS region transcription start site region 1184
Gm35344 4 57956508 to 57968149 11641 + lncRNA gene predicted gene, 35344
Tssr37396 4 57956622 to 57956626 4 + TSS region transcription start site region 37396
Tssr37397 4 57956924 to 57956967 43 + TSS region transcription start site region 37397
Txndc8 4 57984027 to 58009124 25097 - protein coding gene thioredoxin domain containing 8
Tssr41867 4 58009074 to 58009083 9 - TSS region transcription start site region 41867
Tssr41868 4 58009090 to 58009101 11 - TSS region transcription start site region 41868
Tssr41869 4 58009117 to 58009133 16 - TSS region transcription start site region 41869
Gm35402 4 58034506 to 58065819 31313 + lncRNA gene predicted gene, 35402
Svep1 4 58042796 to 58206596 163800 - protein coding gene sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
D4Mit287 4 58094204 to 58094327 123 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 287
Gm26889 4 58178247 to 58206635 28388 + lincRNA gene predicted gene, 26889
Cpgi14336 4 58205698 to 58206650 952 CpG island CpG island 14336
Tssr41870 4 58206323 to 58206334 11 - TSS region transcription start site region 41870
Tssr41871 4 58206348 to 58206359 11 - TSS region transcription start site region 41871
Tssr41872 4 58206504 to 58206520 16 - TSS region transcription start site region 41872
Tssr41873 4 58206533 to 58206544 11 - TSS region transcription start site region 41873
Tssr41874 4 58206558 to 58206575 17 - TSS region transcription start site region 41874
Tssr41875 4 58206578 to 58206587 9 - TSS region transcription start site region 41875
Tssr41876 4 58206599 to 58206616 17 - TSS region transcription start site region 41876
Tssr41877 4 58206639 to 58206648 9 - TSS region transcription start site region 41877
Tssr41878 4 58206670 to 58206673 3 - TSS region transcription start site region 41878
Tssr41879 4 58206686 to 58206697 11 - TSS region transcription start site region 41879
Tssr41880 4 58206768 to 58206790 22 - TSS region transcription start site region 41880
Gm30907 4 58268019 to 58268196 177 - pseudogene predicted gene, 30907
Tssr37398 4 58285930 to 58285975 45 + TSS region transcription start site region 37398
Musk 4 58285960 to 58374303 88343 + protein coding gene muscle, skeletal, receptor tyrosine kinase
Tssr37399 4 58286064 to 58286068 4 + TSS region transcription start site region 37399
Tssr1185 4 58289129 to 58289138 9 + TSS region transcription start site region 1185
Tssr37400 4 58327268 to 58327279 11 + TSS region transcription start site region 37400
Cpgi14337 4 58366743 to 58366959 216 CpG island CpG island 14337
Cpgi14338 4 58373165 to 58373434 269 CpG island CpG island 14338
Lpar1 4 58435255 to 58553898 118643 - protein coding gene lysophosphatidic acid receptor 1
Tssr41881 4 58436852 to 58436864 12 - TSS region transcription start site region 41881
D4Mit1005 4 58439478 to 58439598 120 DNA segment DNA Segment, Chr 4 Massachusetts Institute of Technology 1005
Mir3095 4 58441012 to 58441098 86 - miRNA gene microRNA 3095
Tssr41882 4 58444116 to 58444120 4 - TSS region transcription start site region 41882
Tssr41883 4 58458932 to 58458939 7 - TSS region transcription start site region 41883
Tssr41884 4 58482098 to 58482110 12 - TSS region transcription start site region 41884
Gm12577 4 58483252 to 58483825 573 - pseudogene predicted gene 12577
Tssr41885 4 58483621 to 58483642 21 - TSS region transcription start site region 41885
Tssr41886 4 58499377 to 58499388 11 - TSS region transcription start site region 41886
Tssr41887 4 58499390 to 58499395 5 - TSS region transcription start site region 41887
Tssr41888 4 58499398 to 58499409 11 - TSS region transcription start site region 41888
Tssr41889 4 58499412 to 58499427 15 - TSS region transcription start site region 41889