Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:57612997-58173008

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pakap 4 57568248 to 57896984 328736 + protein coding gene paralemmin A kinase anchor protein
Palm2 4 57568248 to 57717146 148898 + protein coding gene paralemmin 2
Tssr37368 4 57637816 to 57637846 30 + TSS region transcription start site region 37368
Cpgi14332 4 57638032 to 57638204 172 CpG island CpG island 14332
Tssr37369 4 57645493 to 57645497 4 + TSS region transcription start site region 37369
Tssr37370 4 57674605 to 57674616 11 + TSS region transcription start site region 37370
D4Mit242 4 57676622 to 57676894 272 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 242
Tssr41854 4 57689442 to 57689451 9 - TSS region transcription start site region 41854
Tssr37371 4 57689511 to 57689525 14 + TSS region transcription start site region 37371
4930544N03Rik 4 57727765 to 57730419 2654 unclassified gene RIKEN cDNA 4930544N03 gene
Gm35099 4 57730081 to 57756022 25941 - lncRNA gene predicted gene, 35099
Tssr37372 4 57734717 to 57734736 19 + TSS region transcription start site region 37372
Tssr37373 4 57742041 to 57742054 13 + TSS region transcription start site region 37373
Tssr37374 4 57742076 to 57742086 10 + TSS region transcription start site region 37374
Gm12526 4 57757739 to 57763901 6162 - unclassified non-coding RNA gene predicted gene 12526
Gm24277 4 57762607 to 57762710 103 + snRNA gene predicted gene, 24277
Tssr1179 4 57779069 to 57779073 4 + TSS region transcription start site region 1179
Tssr37375 4 57781165 to 57781170 5 + TSS region transcription start site region 37375
Cpgi14333 4 57782108 to 57782463 355 CpG island CpG island 14333
Tssr37376 4 57782153 to 57782186 33 + TSS region transcription start site region 37376
Tssr37377 4 57782188 to 57782205 17 + TSS region transcription start site region 37377
Cpgi14334 4 57782867 to 57783243 376 CpG island CpG island 14334
Tssr37378 4 57792382 to 57792386 4 + TSS region transcription start site region 37378
Tssr37379 4 57813260 to 57813261 1 + TSS region transcription start site region 37379
Tssr37380 4 57821081 to 57821101 20 + TSS region transcription start site region 37380
Tssr37381 4 57845219 to 57845238 19 + TSS region transcription start site region 37381
Tssr37382 4 57845240 to 57845265 25 + TSS region transcription start site region 37382
Akap2 4 57845248 to 57896984 51736 + protein coding gene A kinase (PRKA) anchor protein 2
Tssr1180 4 57845268 to 57845273 5 + TSS region transcription start site region 1180
Tssr37383 4 57845277 to 57845288 11 + TSS region transcription start site region 37383
Tssr37384 4 57849156 to 57849160 4 + TSS region transcription start site region 37384
Tssr37385 4 57854711 to 57854735 24 + TSS region transcription start site region 37385
Tssr37386 4 57854738 to 57854754 16 + TSS region transcription start site region 37386
Tssr37387 4 57872809 to 57872817 8 + TSS region transcription start site region 37387
Gm26138 4 57877389 to 57877495 106 - snRNA gene predicted gene, 26138
Tssr37388 4 57877483 to 57877486 3 + TSS region transcription start site region 37388
Tssr1181 4 57887579 to 57887590 11 + TSS region transcription start site region 1181
Tssr37389 4 57892920 to 57892941 21 + TSS region transcription start site region 37389
Tssr37390 4 57892950 to 57892968 18 + TSS region transcription start site region 37390
Tssr37391 4 57892997 to 57893008 11 + TSS region transcription start site region 37391
Tssr37392 4 57893063 to 57893104 41 + TSS region transcription start site region 37392
Tssr37393 4 57893720 to 57893733 13 + TSS region transcription start site region 37393
Tssr37394 4 57893928 to 57893940 12 + TSS region transcription start site region 37394
Tssr37395 4 57894160 to 57894179 19 + TSS region transcription start site region 37395
D630039A03Rik 4 57908483 to 57916297 7814 - protein coding gene RIKEN cDNA D630039A03 gene
D4Mit295 4 57913346 to 57913446 100 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 295
Tssr41855 4 57915725 to 57915737 12 - TSS region transcription start site region 41855
Tssr41856 4 57915740 to 57915774 34 - TSS region transcription start site region 41856
Tssr41857 4 57916161 to 57916175 14 - TSS region transcription start site region 41857
Tssr41858 4 57916224 to 57916242 18 - TSS region transcription start site region 41858
Tssr41859 4 57916283 to 57916306 23 - TSS region transcription start site region 41859
Tssr41860 4 57916311 to 57916324 13 - TSS region transcription start site region 41860
Tssr41861 4 57916441 to 57916455 14 - TSS region transcription start site region 41861
Tssr1182 4 57916507 to 57916533 26 - TSS region transcription start site region 1182
Gm42293 4 57916639 to 57918420 1781 + lncRNA gene predicted gene, 42293
Gm42292 4 57921421 to 57923431 2010 - lncRNA gene predicted gene, 42292
Txn1 4 57943373 to 57956411 13038 - protein coding gene thioredoxin 1
Tssr41862 4 57943805 to 57943829 24 - TSS region transcription start site region 41862
Tssr41863 4 57951842 to 57951860 18 - TSS region transcription start site region 41863
Tssr41864 4 57951861 to 57951894 33 - TSS region transcription start site region 41864
Tssr41865 4 57953520 to 57953533 13 - TSS region transcription start site region 41865
Cpgi14335 4 57955516 to 57956951 1435 CpG island CpG island 14335
Tssr41866 4 57956283 to 57956298 15 - TSS region transcription start site region 41866
Tssr1183 4 57956311 to 57956358 47 - TSS region transcription start site region 1183
Tssr1184 4 57956416 to 57956424 8 - TSS region transcription start site region 1184
Gm35344 4 57956508 to 57968149 11641 + lncRNA gene predicted gene, 35344
Tssr37396 4 57956622 to 57956626 4 + TSS region transcription start site region 37396
Tssr37397 4 57956924 to 57956967 43 + TSS region transcription start site region 37397
Txndc8 4 57984027 to 58009124 25097 - protein coding gene thioredoxin domain containing 8
Tssr41867 4 58009074 to 58009083 9 - TSS region transcription start site region 41867
Tssr41868 4 58009090 to 58009101 11 - TSS region transcription start site region 41868
Tssr41869 4 58009117 to 58009133 16 - TSS region transcription start site region 41869
Gm35402 4 58034506 to 58065819 31313 + lncRNA gene predicted gene, 35402
Svep1 4 58042796 to 58206596 163800 - protein coding gene sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
D4Mit287 4 58094204 to 58094327 123 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 287