Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:57247699-57888668

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ptpn3 4 57190841 to 57301837 110996 - protein coding gene protein tyrosine phosphatase, non-receptor type 3
Tssr41835 4 57249112 to 57249124 12 - TSS region transcription start site region 41835
Tssr41836 4 57249139 to 57249150 11 - TSS region transcription start site region 41836
Tssr41837 4 57262580 to 57262608 28 - TSS region transcription start site region 41837
Tssr41838 4 57262661 to 57262670 9 - TSS region transcription start site region 41838
Tssr41839 4 57278930 to 57278934 4 - TSS region transcription start site region 41839
Tssr41840 4 57290059 to 57290071 12 - TSS region transcription start site region 41840
Cpgi14326 4 57299465 to 57301041 1576 CpG island CpG island 14326
Gm12536 4 57300096 to 57307305 7209 + lincRNA gene predicted gene 12536
Tssr41841 4 57300304 to 57300317 13 - TSS region transcription start site region 41841
Tssr41842 4 57300324 to 57300358 34 - TSS region transcription start site region 41842
Tssr41843 4 57300362 to 57300404 42 - TSS region transcription start site region 41843
Tssr41844 4 57300751 to 57300839 88 - TSS region transcription start site region 41844
Cpgi14327 4 57301418 to 57302056 638 CpG island CpG island 14327
Tssr41845 4 57301475 to 57301510 35 - TSS region transcription start site region 41845
Tssr41846 4 57301791 to 57301828 37 - TSS region transcription start site region 41846
Cpgi14328 4 57308715 to 57309083 368 CpG island CpG island 14328
Cpgi14329 4 57320705 to 57321130 425 CpG island CpG island 14329
Tssr41847 4 57338945 to 57338951 6 - TSS region transcription start site region 41847
Tssr41848 4 57339001 to 57339009 8 - TSS region transcription start site region 41848
Tssr41849 4 57339017 to 57339047 30 - TSS region transcription start site region 41849
Tssr41850 4 57339072 to 57339083 11 - TSS region transcription start site region 41850
Tssr37350 4 57346673 to 57346679 6 + TSS region transcription start site region 37350
Tssr41851 4 57359513 to 57359516 3 - TSS region transcription start site region 41851
1700042G15Rik 4 57360868 to 57364292 3424 - lincRNA gene RIKEN cDNA 1700042G15 gene
Tssr41852 4 57364259 to 57364303 44 - TSS region transcription start site region 41852
Gm12537 4 57370953 to 57371954 1001 - pseudogene predicted gene 12537
Gm12538 4 57413711 to 57414196 485 - pseudogene predicted gene 12538
Cpgi14330 4 57433638 to 57434874 1236 CpG island CpG island 14330
Tssr37351 4 57434357 to 57434368 11 + TSS region transcription start site region 37351
Tssr37352 4 57434403 to 57434408 5 + TSS region transcription start site region 37352
Tssr37353 4 57434467 to 57434482 15 + TSS region transcription start site region 37353
Tssr37354 4 57434490 to 57434497 7 + TSS region transcription start site region 37354
Gm12539 4 57455561 to 57457549 1988 - pseudogene predicted gene 12539
Tssr41853 4 57496551 to 57496596 45 - TSS region transcription start site region 41853
Cpgi14331 4 57567699 to 57568668 969 CpG island CpG island 14331
Tssr37355 4 57567708 to 57567718 10 + TSS region transcription start site region 37355
Tssr37356 4 57567816 to 57567836 20 + TSS region transcription start site region 37356
Tssr37357 4 57567845 to 57567869 24 + TSS region transcription start site region 37357
Tssr37358 4 57568011 to 57568093 82 + TSS region transcription start site region 37358
Tssr37359 4 57568121 to 57568136 15 + TSS region transcription start site region 37359
Tssr37360 4 57568144 to 57568160 16 + TSS region transcription start site region 37360
Pakap 4 57568248 to 57896984 328736 + protein coding gene paralemmin A kinase anchor protein
Palm2 4 57568248 to 57717146 148898 + protein coding gene paralemmin 2
Tssr37361 4 57578298 to 57578311 13 + TSS region transcription start site region 37361
Tssr1178 4 57578666 to 57578678 12 + TSS region transcription start site region 1178
Tssr37362 4 57594395 to 57594413 18 + TSS region transcription start site region 37362
Tssr37363 4 57594473 to 57594527 54 + TSS region transcription start site region 37363
Tssr37364 4 57594709 to 57594727 18 + TSS region transcription start site region 37364
Tssr37365 4 57594900 to 57594919 19 + TSS region transcription start site region 37365
Tssr37366 4 57595081 to 57595098 17 + TSS region transcription start site region 37366
Tssr37367 4 57604699 to 57604745 46 + TSS region transcription start site region 37367
2700063P09Rik 4 57611534 to 57611871 337 unclassified gene RIKEN cDNA 2700063P09 gene
Tssr37368 4 57637816 to 57637846 30 + TSS region transcription start site region 37368
Cpgi14332 4 57638032 to 57638204 172 CpG island CpG island 14332
Tssr37369 4 57645493 to 57645497 4 + TSS region transcription start site region 37369
Tssr37370 4 57674605 to 57674616 11 + TSS region transcription start site region 37370
D4Mit242 4 57676622 to 57676894 272 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 242
Tssr41854 4 57689442 to 57689451 9 - TSS region transcription start site region 41854
Tssr37371 4 57689511 to 57689525 14 + TSS region transcription start site region 37371
4930544N03Rik 4 57727765 to 57730419 2654 unclassified gene RIKEN cDNA 4930544N03 gene
Gm35099 4 57730081 to 57756022 25941 - lncRNA gene predicted gene, 35099
Tssr37372 4 57734717 to 57734736 19 + TSS region transcription start site region 37372
Tssr37373 4 57742041 to 57742054 13 + TSS region transcription start site region 37373
Tssr37374 4 57742076 to 57742086 10 + TSS region transcription start site region 37374
Gm12526 4 57757739 to 57763901 6162 - unclassified non-coding RNA gene predicted gene 12526
Gm24277 4 57762607 to 57762710 103 + snRNA gene predicted gene, 24277
Tssr1179 4 57779069 to 57779073 4 + TSS region transcription start site region 1179
Tssr37375 4 57781165 to 57781170 5 + TSS region transcription start site region 37375
Cpgi14333 4 57782108 to 57782463 355 CpG island CpG island 14333
Tssr37376 4 57782153 to 57782186 33 + TSS region transcription start site region 37376
Tssr37377 4 57782188 to 57782205 17 + TSS region transcription start site region 37377
Cpgi14334 4 57782867 to 57783243 376 CpG island CpG island 14334
Tssr37378 4 57792382 to 57792386 4 + TSS region transcription start site region 37378
Tssr37379 4 57813260 to 57813261 1 + TSS region transcription start site region 37379
Tssr37380 4 57821081 to 57821101 20 + TSS region transcription start site region 37380
Tssr37381 4 57845219 to 57845238 19 + TSS region transcription start site region 37381
Tssr37382 4 57845240 to 57845265 25 + TSS region transcription start site region 37382
Akap2 4 57845248 to 57896984 51736 + protein coding gene A kinase (PRKA) anchor protein 2
Tssr1180 4 57845268 to 57845273 5 + TSS region transcription start site region 1180
Tssr37383 4 57845277 to 57845288 11 + TSS region transcription start site region 37383
Tssr37384 4 57849156 to 57849160 4 + TSS region transcription start site region 37384
Tssr37385 4 57854711 to 57854735 24 + TSS region transcription start site region 37385
Tssr37386 4 57854738 to 57854754 16 + TSS region transcription start site region 37386
Tssr37387 4 57872809 to 57872817 8 + TSS region transcription start site region 37387
Gm26138 4 57877389 to 57877495 106 - snRNA gene predicted gene, 26138
Tssr37388 4 57877483 to 57877486 3 + TSS region transcription start site region 37388
Tssr1181 4 57887579 to 57887590 11 + TSS region transcription start site region 1181