Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:5600674-7130688

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm11781 4 5602924 to 5603395 471 - pseudogene predicted gene 11781
Tssr36376 4 5611846 to 5611856 10 + TSS region transcription start site region 36376
4930423M02Rik 4 5632328 to 5642284 9956 + lincRNA gene RIKEN cDNA 4930423M02 gene
Tssr36377 4 5632331 to 5632340 9 + TSS region transcription start site region 36377
Cpgi13998 4 5643825 to 5644860 1035 CpG island CpG island 13998
Fam110b 4 5644079 to 5801101 157022 + protein coding gene family with sequence similarity 110, member B
Tssr36378 4 5644084 to 5644129 45 + TSS region transcription start site region 36378
Tssr36379 4 5644133 to 5644211 78 + TSS region transcription start site region 36379
Tssr36380 4 5644216 to 5644240 24 + TSS region transcription start site region 36380
Tssr36381 4 5644268 to 5644279 11 + TSS region transcription start site region 36381
Gm24337 4 5687677 to 5687802 125 - snoRNA gene predicted gene, 24337
Tssr36382 4 5724304 to 5724357 53 + TSS region transcription start site region 36382
Tssr36383 4 5786673 to 5786675 2 + TSS region transcription start site region 36383
Cpgi13999 4 5798251 to 5799067 816 CpG island CpG island 13999
Gm11796 4 5854516 to 5855487 971 - pseudogene predicted gene 11796
D4Mit103 4 5955486 to 5955614 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 103
Sm1 4 5955486 to 5955614 128 QTL susceptibility to Schistosoma mansoni infection 1
Gm18158 4 6025065 to 6025846 781 - pseudogene predicted gene, 18158
Gm11797 4 6069901 to 6070627 726 + pseudogene predicted gene 11797
Cpgi14000 4 6190845 to 6191472 627 CpG island CpG island 14000
Tssr36384 4 6191093 to 6191122 29 + TSS region transcription start site region 36384
Ubxn2b 4 6191105 to 6219788 28683 + protein coding gene UBX domain protein 2B
Gm11798 4 6260091 to 6260965 874 - pseudogene predicted gene 11798
Cyp7a1 4 6265612 to 6275633 10021 - protein coding gene cytochrome P450, family 7, subfamily a, polypeptide 1
Tssr40843 4 6275629 to 6275634 5 - TSS region transcription start site region 40843
Tssr40844 4 6352879 to 6352890 11 - TSS region transcription start site region 40844
4930430E12Rik 4 6355308 to 6357615 2307 - antisense lncRNA gene RIKEN cDNA 4930430E12 gene
Tssr40845 4 6355330 to 6355337 7 - TSS region transcription start site region 40845
Tssr40846 4 6355345 to 6355352 7 - TSS region transcription start site region 40846
Tssr40847 4 6355363 to 6355374 11 - TSS region transcription start site region 40847
Tssr40848 4 6355393 to 6355404 11 - TSS region transcription start site region 40848
Tssr40849 4 6355415 to 6355477 62 - TSS region transcription start site region 40849
Tssr40850 4 6355479 to 6355490 11 - TSS region transcription start site region 40850
Tssr40851 4 6355491 to 6355506 15 - TSS region transcription start site region 40851
Tssr40852 4 6357507 to 6357551 44 - TSS region transcription start site region 40852
Tssr36385 4 6357671 to 6357683 12 + TSS region transcription start site region 36385
Tssr36386 4 6357794 to 6357806 12 + TSS region transcription start site region 36386
Cpgi14001 4 6365466 to 6366164 698 CpG island CpG island 14001
Tssr36387 4 6365674 to 6365688 14 + TSS region transcription start site region 36387
Sdcbp 4 6365680 to 6396122 30442 + protein coding gene syndecan binding protein
Tssr36388 4 6365696 to 6365720 24 + TSS region transcription start site region 36388
Tssr36389 4 6365726 to 6365737 11 + TSS region transcription start site region 36389
Tssr36390 4 6367962 to 6367966 4 + TSS region transcription start site region 36390
Gm37689 4 6378018 to 6378292 274 + unclassified gene predicted gene, 37689
Tssr36391 4 6381094 to 6381103 9 + TSS region transcription start site region 36391
Tssr36392 4 6382597 to 6382608 11 + TSS region transcription start site region 36392
Tssr36393 4 6385018 to 6385105 87 + TSS region transcription start site region 36393
Tssr36394 4 6385505 to 6385518 13 + TSS region transcription start site region 36394
Tssr36395 4 6387028 to 6387071 43 + TSS region transcription start site region 36395
Tssr36396 4 6393166 to 6393171 5 + TSS region transcription start site region 36396
Tssr36397 4 6393648 to 6393701 53 + TSS region transcription start site region 36397
Tssr36398 4 6394624 to 6394649 25 + TSS region transcription start site region 36398
Tssr36399 4 6394732 to 6394752 20 + TSS region transcription start site region 36399
Tssr36400 4 6394858 to 6394910 52 + TSS region transcription start site region 36400
Tssr36401 4 6394914 to 6394966 52 + TSS region transcription start site region 36401
Nsmaf 4 6396207 to 6454271 58064 - protein coding gene neutral sphingomyelinase (N-SMase) activation associated factor
Tssr40853 4 6452611 to 6452622 11 - TSS region transcription start site region 40853
Cpgi14002 4 6453435 to 6454392 957 CpG island CpG island 14002
Tssr36402 4 6453495 to 6453509 14 + TSS region transcription start site region 36402
Tssr40854 4 6453617 to 6453661 44 - TSS region transcription start site region 40854
Tssr40855 4 6453663 to 6453678 15 - TSS region transcription start site region 40855
Tssr40856 4 6453692 to 6453700 8 - TSS region transcription start site region 40856
Tssr40857 4 6453747 to 6453759 12 - TSS region transcription start site region 40857
Tssr40858 4 6454068 to 6454075 7 - TSS region transcription start site region 40858
Tssr40859 4 6454158 to 6454226 68 - TSS region transcription start site region 40859
Tssr40860 4 6454233 to 6454244 11 - TSS region transcription start site region 40860
Tssr40861 4 6454262 to 6454330 68 - TSS region transcription start site region 40861
Tssr40862 4 6494242 to 6494269 27 - TSS region transcription start site region 40862
Gm11803 4 6507941 to 6508384 443 - pseudogene predicted gene 11803
Tssr36403 4 6509941 to 6509947 6 + TSS region transcription start site region 36403
Gm11801 4 6539561 to 6540306 745 + pseudogene predicted gene 11801
D4Mit315 4 6592265 to 6592368 103 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 315
Gm22473 4 6634164 to 6634295 131 - snoRNA gene predicted gene, 22473
Tox 4 6686353 to 6991552 305199 - protein coding gene thymocyte selection-associated high mobility group box
Tssr36404 4 6688146 to 6688193 47 + TSS region transcription start site region 36404
Gm11802 4 6688169 to 6704160 15991 + antisense lncRNA gene predicted gene 11802
Tssr36405 4 6702138 to 6702145 7 + TSS region transcription start site region 36405
Tssr40863 4 6763900 to 6763903 3 - TSS region transcription start site region 40863
Tssr40864 4 6776567 to 6776571 4 - TSS region transcription start site region 40864
Tssr1113 4 6806993 to 6807006 13 - TSS region transcription start site region 1113
Tssr40865 4 6903764 to 6903778 14 - TSS region transcription start site region 40865
2610024J18Rik 4 6941892 to 6942297 405 unclassified gene RIKEN cDNA 2610024J18 gene
Tssr40866 4 6989107 to 6989122 15 - TSS region transcription start site region 40866
Cpgi14003 4 6989515 to 6991616 2101 CpG island CpG island 14003
Tssr40867 4 6989635 to 6989644 9 - TSS region transcription start site region 40867
Tssr40868 4 6989647 to 6989673 26 - TSS region transcription start site region 40868
Tssr40869 4 6990459 to 6990534 75 - TSS region transcription start site region 40869
Tssr40870 4 6990616 to 6990635 19 - TSS region transcription start site region 40870
Tssr40871 4 6990646 to 6990662 16 - TSS region transcription start site region 40871
Tssr36406 4 6990738 to 6990766 28 + TSS region transcription start site region 36406
Tssr40872 4 6990774 to 6990823 49 - TSS region transcription start site region 40872
Tssr40873 4 6990824 to 6990853 29 - TSS region transcription start site region 40873
Tssr40874 4 6991249 to 6991264 15 - TSS region transcription start site region 40874
Gm11804 4 7039047 to 7039514 467 - pseudogene predicted gene 11804