Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:53966701-57456706

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232 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
vsd 4 39452126 to 56769494 17317368 heritable phenotypic marker ventricular septal defect
Agnm1 4 46332646 to 55755867 9423221 QTL autoimmune glomerulonephritis in MRL 1
D4Mit320 4 53973679 to 53973791 112 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 320
Gm24177 4 54004057 to 54004187 130 + snoRNA gene predicted gene, 24177
Tssr41774 4 54028746 to 54028753 7 - TSS region transcription start site region 41774
Gm33893 4 54029718 to 54070691 40973 + lncRNA gene predicted gene, 33893
Gm12484 4 54151831 to 54163678 11847 - lincRNA gene predicted gene 12484
Gm34008 4 54183218 to 54191833 8615 + lncRNA gene predicted gene, 34008
Tssr41775 4 54190157 to 54190187 30 - TSS region transcription start site region 41775
Gm12469 4 54235670 to 54235876 206 - pseudogene predicted gene 12469
Tssr37311 4 54297857 to 54297881 24 + TSS region transcription start site region 37311
Gm25687 4 54468352 to 54468592 240 + unclassified non-coding RNA gene predicted gene, 25687
Gm34072 4 54550320 to 54551475 1155 - lncRNA gene predicted gene, 34072
Tpt1-ps2 4 54564623 to 54565143 520 + pseudogene tumor protein, translationally-controlled, pseudogene 2
D4Mit274 4 54571525 to 54571620 95 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 274
Gm29067 4 54645811 to 54646280 469 - lincRNA gene predicted gene 29067
Gm12478 4 54646542 to 54689451 42909 + lincRNA gene predicted gene 12478
Gm12480 4 54651903 to 54656077 4174 + lincRNA gene predicted gene 12480
Gm12477 4 54669622 to 54670192 570 - pseudogene predicted gene 12477
Gm24628 4 54710624 to 54710912 288 + unclassified non-coding RNA gene predicted gene, 24628
Cpgi14309 4 54758267 to 54758451 184 CpG island CpG island 14309
Gm34133 4 54851245 to 54893939 42694 - lncRNA gene predicted gene, 34133
Gm12479 4 54853128 to 54854712 1584 + pseudogene predicted gene 12479
Gm8364 4 54944469 to 54945858 1389 unclassified gene predicted gene 8364
Gm46859 4 54944474 to 54947939 3465 - lncRNA gene predicted gene, 46859
Cpgi14310 4 54944819 to 54945688 869 CpG island CpG island 14310
Tssr37312 4 54945014 to 54945035 21 + TSS region transcription start site region 37312
Tssr37313 4 54945038 to 54945082 44 + TSS region transcription start site region 37313
Zfp462 4 54945048 to 55083563 138515 + protein coding gene zinc finger protein 462
Tssr41776 4 54945853 to 54945864 11 - TSS region transcription start site region 41776
Tssr37314 4 54946295 to 54946299 4 + TSS region transcription start site region 37314
Cpgi14311 4 54947182 to 54947550 368 CpG island CpG island 14311
Tssr37315 4 54947223 to 54947234 11 + TSS region transcription start site region 37315
Tssr37316 4 54947515 to 54947543 28 + TSS region transcription start site region 37316
Tssr37317 4 54947605 to 54947650 45 + TSS region transcription start site region 37317
Tssr37318 4 54947841 to 54947855 14 + TSS region transcription start site region 37318
Tssr37319 4 54947998 to 54948054 56 + TSS region transcription start site region 37319
Cpgi14312 4 54948040 to 54948381 341 CpG island CpG island 14312
Cpgi14313 4 54948716 to 54949171 455 CpG island CpG island 14313
Tssr37320 4 55008878 to 55008919 41 + TSS region transcription start site region 37320
Tssr37321 4 55009279 to 55009307 28 + TSS region transcription start site region 37321
9430095M17Rik 4 55020909 to 55021272 363 unclassified gene RIKEN cDNA 9430095M17 gene
Tssr37322 4 55042790 to 55042838 48 + TSS region transcription start site region 37322
Gm10588 4 55043187 to 55044814 1627 unclassified gene predicted gene 10588
Tssr37323 4 55044892 to 55044897 5 + TSS region transcription start site region 37323
Tssr37324 4 55044900 to 55044910 10 + TSS region transcription start site region 37324
Gm42289 4 55060520 to 55069271 8751 - lncRNA gene predicted gene, 42289
Tssr37325 4 55082483 to 55082491 8 + TSS region transcription start site region 37325
Gm12515 4 55116563 to 55116923 360 + pseudogene predicted gene 12515
Gm12514 4 55129708 to 55139159 9451 - lincRNA gene predicted gene 12514
Tssr41777 4 55134831 to 55134837 6 - TSS region transcription start site region 41777
Gm12509 4 55163010 to 55163613 603 + pseudogene predicted gene 12509
Gm34231 4 55207862 to 55238936 31074 + lncRNA gene predicted gene, 34231
D4Mit139 4 55250930 to 55251078 148 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 139
Bbaa1 4 55250930 to 55251078 148 QTL B.burgdorferi-associated arthritis 1
Gm12508 4 55254740 to 55255219 479 + pseudogene predicted gene 12508
Gm12512 4 55282064 to 55282280 216 - pseudogene predicted gene 12512
0910001E24Rik 4 55291570 to 55291812 242 unclassified gene RIKEN cDNA 0910001E24 gene
Gm25419 4 55299655 to 55299845 190 - snoRNA gene predicted gene, 25419
Gm42290 4 55341228 to 55349619 8391 - lncRNA gene predicted gene, 42290
Cpgi14314 4 55349465 to 55350825 1360 CpG island CpG island 14314
Tssr37326 4 55350043 to 55350078 35 + TSS region transcription start site region 37326
Rad23b 4 55350043 to 55392237 42194 + protein coding gene RAD23 homolog B, nucleotide excision repair protein
Tssr37327 4 55351323 to 55351334 11 + TSS region transcription start site region 37327
Tssr37328 4 55356499 to 55356534 35 + TSS region transcription start site region 37328
Tssr37329 4 55366810 to 55366822 12 + TSS region transcription start site region 37329
Tssr37330 4 55368039 to 55368053 14 + TSS region transcription start site region 37330
Tssr37331 4 55370194 to 55370337 143 + TSS region transcription start site region 37331
Gm12516 4 55392317 to 55392701 384 - pseudogene predicted gene 12516
Gm34290 4 55393796 to 55399385 5589 - lncRNA gene predicted gene, 34290
Tssr41778 4 55399049 to 55399067 18 - TSS region transcription start site region 41778
Gm12513 4 55408956 to 55409307 351 - pseudogene predicted gene 12513
Gm12505 4 55410443 to 55418842 8399 - lincRNA gene predicted gene 12505
Gm12510 4 55450684 to 55465814 15130 - lincRNA gene predicted gene 12510
Tssr37332 4 55464598 to 55464616 18 + TSS region transcription start site region 37332
Gm22150 4 55469025 to 55469159 134 - snoRNA gene predicted gene, 22150
Tssr41779 4 55475379 to 55475401 22 - TSS region transcription start site region 41779
Tssr41780 4 55477382 to 55477402 20 - TSS region transcription start site region 41780
Tssr37333 4 55477584 to 55477595 11 + TSS region transcription start site region 37333
Tssr37334 4 55477726 to 55477767 41 + TSS region transcription start site region 37334
Tssr37335 4 55477872 to 55477883 11 + TSS region transcription start site region 37335
Tssr37336 4 55477923 to 55477930 7 + TSS region transcription start site region 37336
Tssr37337 4 55478186 to 55478199 13 + TSS region transcription start site region 37337
Tssr37338 4 55480252 to 55480263 11 + TSS region transcription start site region 37338
Cpgi14315 4 55480321 to 55480772 451 CpG island CpG island 14315
Gm12507 4 55508294 to 55508708 414 + pseudogene predicted gene 12507
Cpgi14316 4 55514563 to 55515381 818 CpG island CpG island 14316
Klf4 4 55527143 to 55532466 5323 - protein coding gene Kruppel-like factor 4 (gut)
Tssr41781 4 55528131 to 55528140 9 - TSS region transcription start site region 41781
Tssr41782 4 55528574 to 55528578 4 - TSS region transcription start site region 41782
Cpgi14317 4 55530119 to 55533524 3405 CpG island CpG island 14317
Tssr41783 4 55530938 to 55530956 18 - TSS region transcription start site region 41783
Tssr41784 4 55532123 to 55532134 11 - TSS region transcription start site region 41784
Tssr41785 4 55532136 to 55532167 31 - TSS region transcription start site region 41785
Tssr41786 4 55532179 to 55532238 59 - TSS region transcription start site region 41786
Tssr41787 4 55532280 to 55532322 42 - TSS region transcription start site region 41787
Tssr41788 4 55532465 to 55532485 20 - TSS region transcription start site region 41788
Tssr37339 4 55532711 to 55532764 53 + TSS region transcription start site region 37339
Tssr41789 4 55533322 to 55533331 9 - TSS region transcription start site region 41789
Cpgi14318 4 55533794 to 55533951 157 CpG island CpG island 14318
Tssr37340 4 55534647 to 55534690 43 + TSS region transcription start site region 37340
Gm34343 4 55538879 to 55541743 2864 + lncRNA gene predicted gene, 34343
Tssr37341 4 55540181 to 55540186 5 + TSS region transcription start site region 37341
Gm12511 4 55571792 to 55598749 26957 + lincRNA gene predicted gene 12511
Gm12506 4 55605149 to 55636901 31752 + lincRNA gene predicted gene 12506
Cpgi14319 4 55650963 to 55651753 790 CpG island CpG island 14319
Tssr41790 4 55651204 to 55651218 14 - TSS region transcription start site region 41790
Tssr37342 4 55651677 to 55651712 35 + TSS region transcription start site region 37342
Tssr37343 4 55711701 to 55711706 5 + TSS region transcription start site region 37343
Tssr37344 4 55744576 to 55744581 5 + TSS region transcription start site region 37344
D4Mit241 4 55755774 to 55755867 93 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 241
Gm34482 4 55948000 to 55953411 5411 - lncRNA gene predicted gene, 34482
Gm12519 4 55969023 to 55993739 24716 - lincRNA gene predicted gene 12519
Tssr41791 4 56000786 to 56000816 30 - TSS region transcription start site region 41791
Tssr37345 4 56057786 to 56057794 8 + TSS region transcription start site region 37345
Gm12520 4 56162940 to 56163255 315 + pseudogene predicted gene 12520
2310081O03Rik 4 56220617 to 56224521 3904 - lincRNA gene RIKEN cDNA 2310081O03 gene
Tssr41792 4 56224520 to 56224544 24 - TSS region transcription start site region 41792
Gm42291 4 56267323 to 56315967 48644 - lncRNA gene predicted gene, 42291
Gm12518 4 56387802 to 56388574 772 + pseudogene predicted gene 12518
Tssr1176 4 56419755 to 56419794 39 + TSS region transcription start site region 1176
Tssr41793 4 56433057 to 56433064 7 - TSS region transcription start site region 41793
Gm34628 4 56455912 to 56478396 22484 - lncRNA gene predicted gene, 34628
D4Mit314 4 56598247 to 56598394 147 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology-314
Gm34687 4 56622955 to 56714425 91470 - lncRNA gene predicted gene, 34687
Tssr41794 4 56673978 to 56673989 11 - TSS region transcription start site region 41794
Gm26144 4 56678904 to 56679035 131 - snoRNA gene predicted gene, 26144
Actl7b 4 56740005 to 56741425 1420 - protein coding gene actin-like 7b
Gm26657 4 56740070 to 56741377 1307 + protein coding gene predicted gene, 26657
Cpgi14320 4 56740298 to 56741229 931 CpG island CpG island 14320
Tssr41795 4 56741403 to 56741417 14 - TSS region transcription start site region 41795
Tssr41796 4 56741423 to 56741435 12 - TSS region transcription start site region 41796
Tssr41797 4 56741446 to 56741447 1 - TSS region transcription start site region 41797
Tssr37346 4 56743406 to 56743438 32 + TSS region transcription start site region 37346
Actl7a 4 56743422 to 56744925 1503 + protein coding gene actin-like 7a
Tssr37347 4 56745914 to 56745918 4 + TSS region transcription start site region 37347
Elp1 4 56749680 to 56802331 52651 - protein coding gene elongator complex protein 1
Tssr41798 4 56757320 to 56757329 9 - TSS region transcription start site region 41798
Tssr41799 4 56757346 to 56757363 17 - TSS region transcription start site region 41799
Gm22952 4 56761922 to 56762041 119 - snoRNA gene predicted gene, 22952
D4Mit288 4 56769379 to 56769494 115 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 288
Tssr41800 4 56789210 to 56789214 4 - TSS region transcription start site region 41800
Cpgi14321 4 56801845 to 56803024 1179 CpG island CpG island 14321
Tssr41801 4 56802242 to 56802262 20 - TSS region transcription start site region 41801
Tssr41802 4 56802265 to 56802322 57 - TSS region transcription start site region 41802
Tssr1177 4 56802316 to 56802327 11 + TSS region transcription start site region 1177
Tssr41803 4 56802325 to 56802330 5 - TSS region transcription start site region 41803
Tssr37348 4 56802337 to 56802359 22 + TSS region transcription start site region 37348
Abitram 4 56802345 to 56809601 7256 + protein coding gene actin binding transcription modulator
Tssr37349 4 56802570 to 56802613 43 + TSS region transcription start site region 37349
Ctnnal1 4 56810935 to 56865188 54253 - protein coding gene catenin (cadherin associated protein), alpha-like 1
Tssr41804 4 56846007 to 56846012 5 - TSS region transcription start site region 41804
Tssr41805 4 56846019 to 56846039 20 - TSS region transcription start site region 41805
Tssr41806 4 56846060 to 56846093 33 - TSS region transcription start site region 41806
Cpgi14322 4 56864234 to 56865530 1296 CpG island CpG island 14322
Tssr41807 4 56865135 to 56865208 73 - TSS region transcription start site region 41807
Tssr41808 4 56874609 to 56874626 17 - TSS region transcription start site region 41808
Tmem245 4 56876003 to 56947565 71562 - protein coding gene transmembrane protein 245
Mir32 4 56895229 to 56895298 69 - miRNA gene microRNA 32
Gm25053 4 56897626 to 56897757 131 - snoRNA gene predicted gene, 25053
Gm22300 4 56913642 to 56913767 125 + snoRNA gene predicted gene, 22300
Tssr41809 4 56916140 to 56916151 11 - TSS region transcription start site region 41809
Tssr41810 4 56916158 to 56916184 26 - TSS region transcription start site region 41810
Cpgi14323 4 56946304 to 56947684 1380 CpG island CpG island 14323
Tssr41811 4 56947412 to 56947447 35 - TSS region transcription start site region 41811
Frrs1l 4 56960136 to 56990391 30255 - protein coding gene ferric-chelate reductase 1 like
Tssr41812 4 56960311 to 56960325 14 - TSS region transcription start site region 41812
Tssr41813 4 56960436 to 56960440 4 - TSS region transcription start site region 41813
Cpgi14324 4 56989687 to 56990647 960 CpG island CpG island 14324
Tssr41814 4 56990087 to 56990112 25 - TSS region transcription start site region 41814
Tssr41815 4 56990306 to 56990329 23 - TSS region transcription start site region 41815
Tssr41816 4 56990332 to 56990396 64 - TSS region transcription start site region 41816
Tssr41817 4 56990402 to 56990413 11 - TSS region transcription start site region 41817
Epb41l4b 4 56992043 to 57143168 151125 - protein coding gene erythrocyte membrane protein band 4.1 like 4b
D4Mit216 4 57001253 to 57001438 185 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 216
Tssr41818 4 57011624 to 57011644 20 - TSS region transcription start site region 41818
Gm34738 4 57052753 to 57054106 1353 + lncRNA gene predicted gene, 34738
D4Ertd335e 4 57066676 to 57066894 218 DNA segment DNA segment, Chr 4, ERATO Doi 335, expressed
Tssr41819 4 57073329 to 57073375 46 - TSS region transcription start site region 41819
Tssr41820 4 57077220 to 57077260 40 - TSS region transcription start site region 41820
Tssr41821 4 57120007 to 57120014 7 - TSS region transcription start site region 41821
Tssr41822 4 57120016 to 57120034 18 - TSS region transcription start site region 41822
Tssr41823 4 57120042 to 57120065 23 - TSS region transcription start site region 41823
Tssr41824 4 57120156 to 57120174 18 - TSS region transcription start site region 41824
Cpgi14325 4 57141878 to 57144179 2301 CpG island CpG island 14325
Tssr41825 4 57143105 to 57143161 56 - TSS region transcription start site region 41825
Tssr41826 4 57143578 to 57143624 46 - TSS region transcription start site region 41826
Tssr41827 4 57143678 to 57143732 54 - TSS region transcription start site region 41827
Tssr41828 4 57143747 to 57143758 11 - TSS region transcription start site region 41828
Gm34802 4 57160663 to 57164154 3491 + lncRNA gene predicted gene, 34802
Gm12530 4 57172071 to 57176554 4483 + antisense lncRNA gene predicted gene 12530
Ptpn3 4 57190841 to 57301837 110996 - protein coding gene protein tyrosine phosphatase, non-receptor type 3
vc 4 57190841 to 59041899 1851058 heritable phenotypic marker vacillans
Tssr41829 4 57240993 to 57241004 11 - TSS region transcription start site region 41829
Tssr41830 4 57241005 to 57241008 3 - TSS region transcription start site region 41830
Tssr41831 4 57241042 to 57241056 14 - TSS region transcription start site region 41831
Tssr41832 4 57241122 to 57241139 17 - TSS region transcription start site region 41832
Tssr41833 4 57241179 to 57241192 13 - TSS region transcription start site region 41833
Tssr41834 4 57241193 to 57241200 7 - TSS region transcription start site region 41834
Tssr41835 4 57249112 to 57249124 12 - TSS region transcription start site region 41835