Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:53472047-53792058

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30 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc44a1 4 53440413 to 53622478 182065 + protein coding gene solute carrier family 44, member 1
Cpgi14302 4 53475311 to 53475498 187 CpG island CpG island 14302
D4Mit111 4 53550839 to 53550967 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 111
Abbp2 4 53550839 to 93875068 40324229 QTL A/J and C57BL/6 blood pressure 2
Mopkd1 4 53550839 to 53550967 128 QTL modifier of polycystic kidney disease progression 1
nmf111 4 53550839 to 79603773 26052934 heritable phenotypic marker neuroscience mutagenesis facility, 111
Nmf191 4 53550839 to 86450248 32899409 heritable phenotypic marker neuroscience mutagenesis facility, 191
1700060J05Rik 4 53562983 to 53564697 1714 - antisense lncRNA gene RIKEN cDNA 1700060J05 gene
Tssr41771 4 53564681 to 53564706 25 - TSS region transcription start site region 41771
Tssr37299 4 53566192 to 53566198 6 + TSS region transcription start site region 37299
Tssr37300 4 53566586 to 53566592 6 + TSS region transcription start site region 37300
9130223C08Rik 4 53572439 to 53573033 594 unclassified gene RIKEN cDNA 9130223C08 gene
Gm33729 4 53583196 to 53629872 46676 - lncRNA gene predicted gene, 33729
Cpgi14303 4 53630971 to 53632139 1168 CpG island CpG island 14303
Tssr37301 4 53631396 to 53631457 61 + TSS region transcription start site region 37301
Tssr37302 4 53631460 to 53631505 45 + TSS region transcription start site region 37302
Fsd1l 4 53631471 to 53707009 75538 + protein coding gene fibronectin type III and SPRY domain containing 1-like
Tssr37303 4 53631506 to 53631520 14 + TSS region transcription start site region 37303
Tssr41772 4 53632047 to 53632058 11 - TSS region transcription start site region 41772
Gm12470 4 53662305 to 53663341 1036 + pseudogene predicted gene 12470
Tssr37304 4 53712667 to 53712676 9 + TSS region transcription start site region 37304
Fktn 4 53712729 to 53765785 53056 + protein coding gene fukutin
Cpgi14304 4 53713943 to 53714774 831 CpG island CpG island 14304
Tssr37305 4 53714142 to 53714199 57 + TSS region transcription start site region 37305
Gm25445 4 53720902 to 53721200 298 - unclassified non-coding RNA gene predicted gene, 25445
Cpgi14305 4 53779437 to 53779920 483 CpG island CpG island 14305
Tssr37306 4 53779694 to 53779706 12 + TSS region transcription start site region 37306
Tal2 4 53779705 to 53786885 7180 + protein coding gene T cell acute lymphocytic leukemia 2
Rps15a-ps8 4 53791070 to 53791456 386 - pseudogene ribosomal protein S15A, pseudogene 8
Skts-fp1 4 124161387 to 53550839 -70610548 QTL skin tumor susceptibility in FVB and PWK 1