Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:53311471-54027009

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D4Mit163 4 53312081 to 53312216 135 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 163
Tssr41768 4 53339817 to 53339844 27 - TSS region transcription start site region 41768
Tssr37294 4 53340117 to 53340128 11 + TSS region transcription start site region 37294
Tssr37295 4 53341415 to 53341423 8 + TSS region transcription start site region 37295
Gm12496 4 53401948 to 53404030 2082 - lincRNA gene predicted gene 12496
D4Mit272 4 53402473 to 53402649 176 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 272
Tssr41769 4 53403563 to 53403574 11 - TSS region transcription start site region 41769
Tssr41770 4 53410887 to 53410900 13 - TSS region transcription start site region 41770
Gm46858 4 53438009 to 53440685 2676 - protein coding gene predicted gene, 46858
Cpgi14301 4 53439729 to 53441501 1772 CpG island CpG island 14301
Tssr37296 4 53440388 to 53440502 114 + TSS region transcription start site region 37296
Slc44a1 4 53440413 to 53622478 182065 + protein coding gene solute carrier family 44, member 1
Tssr37297 4 53440516 to 53440548 32 + TSS region transcription start site region 37297
Tssr37298 4 53456896 to 53456898 2 + TSS region transcription start site region 37298
Cpgi14302 4 53475311 to 53475498 187 CpG island CpG island 14302
D4Mit111 4 53550839 to 53550967 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 111
Abbp2 4 53550839 to 93875068 40324229 QTL A/J and C57BL/6 blood pressure 2
Mopkd1 4 53550839 to 53550967 128 QTL modifier of polycystic kidney disease progression 1
nmf111 4 53550839 to 79603773 26052934 heritable phenotypic marker neuroscience mutagenesis facility, 111
Nmf191 4 53550839 to 86450248 32899409 heritable phenotypic marker neuroscience mutagenesis facility, 191
1700060J05Rik 4 53562983 to 53564697 1714 - antisense lncRNA gene RIKEN cDNA 1700060J05 gene
Tssr41771 4 53564681 to 53564706 25 - TSS region transcription start site region 41771
Tssr37299 4 53566192 to 53566198 6 + TSS region transcription start site region 37299
Tssr37300 4 53566586 to 53566592 6 + TSS region transcription start site region 37300
9130223C08Rik 4 53572439 to 53573033 594 unclassified gene RIKEN cDNA 9130223C08 gene
Gm33729 4 53583196 to 53629872 46676 - lncRNA gene predicted gene, 33729
Cpgi14303 4 53630971 to 53632139 1168 CpG island CpG island 14303
Tssr37301 4 53631396 to 53631457 61 + TSS region transcription start site region 37301
Tssr37302 4 53631460 to 53631505 45 + TSS region transcription start site region 37302
Fsd1l 4 53631471 to 53707009 75538 + protein coding gene fibronectin type III and SPRY domain containing 1-like
Tssr37303 4 53631506 to 53631520 14 + TSS region transcription start site region 37303
Tssr41772 4 53632047 to 53632058 11 - TSS region transcription start site region 41772
Gm12470 4 53662305 to 53663341 1036 + pseudogene predicted gene 12470
Tssr37304 4 53712667 to 53712676 9 + TSS region transcription start site region 37304
Fktn 4 53712729 to 53765785 53056 + protein coding gene fukutin
Cpgi14304 4 53713943 to 53714774 831 CpG island CpG island 14304
Tssr37305 4 53714142 to 53714199 57 + TSS region transcription start site region 37305
Gm25445 4 53720902 to 53721200 298 - unclassified non-coding RNA gene predicted gene, 25445
Cpgi14305 4 53779437 to 53779920 483 CpG island CpG island 14305
Tssr37306 4 53779694 to 53779706 12 + TSS region transcription start site region 37306
Tal2 4 53779705 to 53786885 7180 + protein coding gene T cell acute lymphocytic leukemia 2
Rps15a-ps8 4 53791070 to 53791456 386 - pseudogene ribosomal protein S15A, pseudogene 8
D4Mit184 4 53796566 to 53796668 102 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 184
Tssr41773 4 53825883 to 53825893 10 - TSS region transcription start site region 41773
Cpgi14306 4 53825944 to 53826484 540 CpG island CpG island 14306
Tssr37307 4 53826014 to 53826107 93 + TSS region transcription start site region 37307
Tmem38b 4 53826045 to 53862019 35974 + protein coding gene transmembrane protein 38B
Tssr37308 4 53826162 to 53826186 24 + TSS region transcription start site region 37308
D4Mit240 4 53828853 to 53828978 125 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 240
Tssr37309 4 53832570 to 53832582 12 + TSS region transcription start site region 37309
Tssr37310 4 53835122 to 53835123 1 + TSS region transcription start site region 37310
Cpgi14307 4 53859998 to 53860159 161 CpG island CpG island 14307
n-R5s185 4 53860652 to 53860770 118 + rRNA gene nuclear encoded rRNA 5S 185
Gm12468 4 53877925 to 53878328 403 + pseudogene predicted gene 12468
Cpgi14308 4 53878656 to 53879062 406 CpG island CpG island 14308
Gm23745 4 53905696 to 53905820 124 + snoRNA gene predicted gene, 23745
Gm33840 4 53948265 to 53951306 3041 - lncRNA gene predicted gene, 33840
D4Mit320 4 53973679 to 53973791 112 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 320
Gm24177 4 54004057 to 54004187 130 + snoRNA gene predicted gene, 24177
Skts-fp1 4 124161387 to 53550839 -70610548 QTL skin tumor susceptibility in FVB and PWK 1