Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:53158563-53648574

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Abca1 4 53030787 to 53159895 129108 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 1
Cpgi14298 4 53159290 to 53160220 930 CpG island CpG island 14298
Tssr41767 4 53159885 to 53159900 15 - TSS region transcription start site region 41767
Cpgi14299 4 53165394 to 53166209 815 CpG island CpG island 14299
4930412L05Rik 4 53205066 to 53217857 12791 - lncRNA gene RIKEN cDNA 4930412L05 gene
Cpgi14300 4 53217493 to 53218050 557 CpG island CpG island 14300
Tssr37289 4 53227338 to 53227378 40 + TSS region transcription start site region 37289
Tssr37290 4 53246174 to 53246182 8 + TSS region transcription start site region 37290
Tssr37291 4 53246184 to 53246202 18 + TSS region transcription start site region 37291
4930522O17Rik 4 53246196 to 53251115 4919 + antisense lncRNA gene RIKEN cDNA 4930522O17 gene
Tssr37292 4 53246206 to 53246213 7 + TSS region transcription start site region 37292
Tssr37293 4 53246216 to 53246227 11 + TSS region transcription start site region 37293
AI427809 4 53261356 to 53270232 8876 - lincRNA gene expressed sequence AI427809
Gm12495 4 53308226 to 53308672 446 + pseudogene predicted gene 12495
D4Mit163 4 53312081 to 53312216 135 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 163
Tssr41768 4 53339817 to 53339844 27 - TSS region transcription start site region 41768
Tssr37294 4 53340117 to 53340128 11 + TSS region transcription start site region 37294
Tssr37295 4 53341415 to 53341423 8 + TSS region transcription start site region 37295
Gm12496 4 53401948 to 53404030 2082 - lincRNA gene predicted gene 12496
D4Mit272 4 53402473 to 53402649 176 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 272
Tssr41769 4 53403563 to 53403574 11 - TSS region transcription start site region 41769
Tssr41770 4 53410887 to 53410900 13 - TSS region transcription start site region 41770
Gm46858 4 53438009 to 53440685 2676 - protein coding gene predicted gene, 46858
Cpgi14301 4 53439729 to 53441501 1772 CpG island CpG island 14301
Tssr37296 4 53440388 to 53440502 114 + TSS region transcription start site region 37296
Slc44a1 4 53440413 to 53622478 182065 + protein coding gene solute carrier family 44, member 1
Tssr37297 4 53440516 to 53440548 32 + TSS region transcription start site region 37297
Tssr37298 4 53456896 to 53456898 2 + TSS region transcription start site region 37298
Cpgi14302 4 53475311 to 53475498 187 CpG island CpG island 14302
D4Mit111 4 53550839 to 53550967 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 111
Mopkd1 4 53550839 to 53550967 128 QTL modifier of polycystic kidney disease progression 1
Abbp2 4 53550839 to 93875068 40324229 QTL A/J and C57BL/6 blood pressure 2
nmf111 4 53550839 to 79603773 26052934 heritable phenotypic marker neuroscience mutagenesis facility, 111
Nmf191 4 53550839 to 86450248 32899409 heritable phenotypic marker neuroscience mutagenesis facility, 191
1700060J05Rik 4 53562983 to 53564697 1714 - antisense lncRNA gene RIKEN cDNA 1700060J05 gene
Tssr41771 4 53564681 to 53564706 25 - TSS region transcription start site region 41771
Tssr37299 4 53566192 to 53566198 6 + TSS region transcription start site region 37299
Tssr37300 4 53566586 to 53566592 6 + TSS region transcription start site region 37300
9130223C08Rik 4 53572439 to 53573033 594 unclassified gene RIKEN cDNA 9130223C08 gene
Gm33729 4 53583196 to 53629872 46676 - lncRNA gene predicted gene, 33729
Cpgi14303 4 53630971 to 53632139 1168 CpG island CpG island 14303
Tssr37301 4 53631396 to 53631457 61 + TSS region transcription start site region 37301
Tssr37302 4 53631460 to 53631505 45 + TSS region transcription start site region 37302
Fsd1l 4 53631471 to 53707009 75538 + protein coding gene fibronectin type III and SPRY domain containing 1-like
Tssr37303 4 53631506 to 53631520 14 + TSS region transcription start site region 37303
Tssr41772 4 53632047 to 53632058 11 - TSS region transcription start site region 41772
Skts-fp1 4 124161387 to 53550839 -70610548 QTL skin tumor susceptibility in FVB and PWK 1