Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:52351174-54141182

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179 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm12475 4 52360826 to 52362211 1385 - pseudogene predicted gene 12475
Smc2os 4 52430284 to 52438964 8680 - antisense lncRNA gene structural maintenance of chromosomes 2, opposite strand
Cpgi14294 4 52438884 to 52439658 774 CpG island CpG island 14294
Tssr37274 4 52439224 to 52439232 8 + TSS region transcription start site region 37274
Tssr37275 4 52439235 to 52439287 52 + TSS region transcription start site region 37275
Smc2 4 52439243 to 52488260 49017 + protein coding gene structural maintenance of chromosomes 2
Tssr37276 4 52440108 to 52440113 5 + TSS region transcription start site region 37276
Tmc4-ps 4 52443915 to 52444172 257 - pseudogene Tmc4 retrotransposed pseudogene
Tssr41708 4 52445415 to 52445440 25 - TSS region transcription start site region 41708
Tssr37277 4 52450856 to 52450866 10 + TSS region transcription start site region 37277
Tssr1174 4 52462964 to 52462977 13 + TSS region transcription start site region 1174
Tssr37278 4 52465928 to 52465941 13 + TSS region transcription start site region 37278
Vma21-ps 4 52496939 to 52497244 305 - pseudogene VMA21 vacuolar H+-ATPase homolog (S. cerevisiae), pseudogene
Tssr37279 4 52596270 to 52596276 6 + TSS region transcription start site region 37279
Toporsl 4 52596274 to 52612424 16150 + protein coding gene topoisomerase I binding, arginine/serine-rich like
Tssr37280 4 52596285 to 52596299 14 + TSS region transcription start site region 37280
Tssr37281 4 52607204 to 52607215 11 + TSS region transcription start site region 37281
Gm33435 4 52615448 to 52617881 2433 - lncRNA gene predicted gene, 33435
Tssr41709 4 52814517 to 52814567 50 - TSS region transcription start site region 41709
Tssr37282 4 52814594 to 52814629 35 + TSS region transcription start site region 37282
4930552N02Rik 4 52814604 to 52828269 13665 + lncRNA gene RIKEN cDNA 4930552N02 gene
Gm12482 4 52821488 to 52822117 629 + pseudogene predicted gene 12482
Olfr275 4 52825399 to 52826358 959 + protein coding gene olfactory receptor 275
D4Nds6 4 52838743 to 52838888 145 DNA segment DNA segment, Chr 4, Nuffield Department of Surgery 6
Olfr274-ps1 4 52842198 to 52843026 828 - pseudogene olfactory receptor 274, pseudogene 1
Olfr273 4 52855558 to 52856511 953 - protein coding gene olfactory receptor 273
D4Mit110 4 52859707 to 52859853 146 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 110
Hdlq10 4 52859707 to 52859853 146 QTL HDL QTL 10
Gm47786 4 52878008 to 52878702 694 + pseudogene predicted gene, 47786
Cpgi14295 4 52880954 to 52881131 177 CpG island CpG island 14295
Cct3-ps1 4 52900599 to 52902683 2084 + pseudogene chaperonin containing Tcp1, subunit 3 (gamma) pseudogene 1
Tssr37283 4 52900608 to 52900620 12 + TSS region transcription start site region 37283
Olfr272 4 52910833 to 52911792 959 - protein coding gene olfactory receptor 272
Olfr271-ps1 4 52935430 to 52936381 951 - polymorphic pseudogene olfactory receptor 271, pseudogene 1
Gm33479 4 52944344 to 52958773 14429 - lncRNA gene predicted gene, 33479
Olfr270 4 52970629 to 52971567 938 + protein coding gene olfactory receptor 270
Cpgi14296 4 52989216 to 52989475 259 CpG island CpG island 14296
Tssr37284 4 52989271 to 52989308 37 + TSS region transcription start site region 37284
Nipsnap3a 4 52989284 to 53000854 11570 + protein coding gene nipsnap homolog 3A
Cpgi14297 4 53011591 to 53012596 1005 CpG island CpG island 14297
Nipsnap3b 4 53011880 to 53022060 10180 + protein coding gene nipsnap homolog 3B
Tssr37285 4 53011894 to 53011907 13 + TSS region transcription start site region 37285
Tssr37286 4 53011916 to 53011978 62 + TSS region transcription start site region 37286
Tssr41710 4 53029119 to 53029126 7 - TSS region transcription start site region 41710
Abca1 4 53030787 to 53159895 129108 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 1
Tssr41711 4 53031542 to 53031553 11 - TSS region transcription start site region 41711
Tssr41712 4 53031559 to 53031570 11 - TSS region transcription start site region 41712
Tssr41713 4 53031650 to 53031662 12 - TSS region transcription start site region 41713
Tssr41714 4 53031716 to 53031723 7 - TSS region transcription start site region 41714
Tssr41715 4 53031777 to 53031791 14 - TSS region transcription start site region 41715
Tssr41716 4 53031796 to 53031806 10 - TSS region transcription start site region 41716
Tssr41717 4 53032105 to 53032139 34 - TSS region transcription start site region 41717
Tssr41718 4 53032180 to 53032198 18 - TSS region transcription start site region 41718
Tssr41719 4 53032205 to 53032217 12 - TSS region transcription start site region 41719
Tssr41720 4 53032223 to 53032265 42 - TSS region transcription start site region 41720
Tssr41721 4 53032268 to 53032280 12 - TSS region transcription start site region 41721
Tssr41722 4 53032294 to 53032305 11 - TSS region transcription start site region 41722
Tssr41723 4 53032309 to 53032340 31 - TSS region transcription start site region 41723
Tssr41724 4 53032344 to 53032395 51 - TSS region transcription start site region 41724
Tssr41725 4 53032401 to 53032426 25 - TSS region transcription start site region 41725
Tssr41726 4 53032446 to 53032464 18 - TSS region transcription start site region 41726
Tssr41727 4 53032478 to 53032497 19 - TSS region transcription start site region 41727
Tssr41728 4 53032611 to 53032624 13 - TSS region transcription start site region 41728
Tssr41729 4 53032813 to 53032830 17 - TSS region transcription start site region 41729
Tssr41730 4 53033047 to 53033070 23 - TSS region transcription start site region 41730
Tssr41731 4 53033118 to 53033130 12 - TSS region transcription start site region 41731
Tssr41732 4 53033749 to 53033767 18 - TSS region transcription start site region 41732
Tssr41733 4 53043282 to 53043302 20 - TSS region transcription start site region 41733
Tssr41734 4 53065789 to 53065791 2 - TSS region transcription start site region 41734
Tssr41735 4 53094910 to 53094917 7 - TSS region transcription start site region 41735
Tssr41736 4 53096399 to 53096420 21 - TSS region transcription start site region 41736
Tssr41737 4 53104518 to 53104565 47 - TSS region transcription start site region 41737
Tssr41738 4 53109319 to 53109323 4 - TSS region transcription start site region 41738
Tssr41739 4 53112525 to 53112559 34 - TSS region transcription start site region 41739
Tssr41740 4 53113336 to 53113411 75 - TSS region transcription start site region 41740
Tssr41741 4 53113414 to 53113439 25 - TSS region transcription start site region 41741
Tssr41742 4 53113467 to 53113491 24 - TSS region transcription start site region 41742
Tssr41743 4 53113497 to 53113509 12 - TSS region transcription start site region 41743
Tssr41744 4 53116219 to 53116262 43 - TSS region transcription start site region 41744
Tssr41745 4 53117966 to 53117983 17 - TSS region transcription start site region 41745
Tssr41746 4 53118823 to 53118867 44 - TSS region transcription start site region 41746
Tssr37287 4 53120670 to 53120700 30 + TSS region transcription start site region 37287
Tssr41747 4 53127924 to 53127953 29 - TSS region transcription start site region 41747
Tssr41748 4 53128114 to 53128134 20 - TSS region transcription start site region 41748
Tssr37288 4 53128818 to 53128835 17 + TSS region transcription start site region 37288
Tssr41749 4 53130852 to 53130869 17 - TSS region transcription start site region 41749
Tssr41750 4 53130878 to 53130911 33 - TSS region transcription start site region 41750
Tssr41751 4 53130963 to 53130974 11 - TSS region transcription start site region 41751
Tssr41752 4 53130991 to 53131004 13 - TSS region transcription start site region 41752
Tssr41753 4 53131091 to 53131103 12 - TSS region transcription start site region 41753
Tssr41754 4 53137048 to 53137050 2 - TSS region transcription start site region 41754
Tssr1175 4 53142629 to 53142639 10 - TSS region transcription start site region 1175
Tssr41755 4 53142739 to 53142755 16 - TSS region transcription start site region 41755
Tssr41756 4 53142756 to 53142769 13 - TSS region transcription start site region 41756
Tssr41757 4 53142778 to 53142789 11 - TSS region transcription start site region 41757
Tssr41758 4 53144024 to 53144037 13 - TSS region transcription start site region 41758
Tssr41759 4 53144060 to 53144088 28 - TSS region transcription start site region 41759
Tssr41760 4 53144091 to 53144111 20 - TSS region transcription start site region 41760
Tssr41761 4 53144225 to 53144241 16 - TSS region transcription start site region 41761
Tssr41762 4 53144253 to 53144264 11 - TSS region transcription start site region 41762
Tssr41763 4 53149529 to 53149540 11 - TSS region transcription start site region 41763
Tssr41764 4 53153716 to 53153743 27 - TSS region transcription start site region 41764
Tssr41765 4 53157722 to 53157726 4 - TSS region transcription start site region 41765
Tssr41766 4 53158426 to 53158429 3 - TSS region transcription start site region 41766
Cpgi14298 4 53159290 to 53160220 930 CpG island CpG island 14298
Tssr41767 4 53159885 to 53159900 15 - TSS region transcription start site region 41767
Cpgi14299 4 53165394 to 53166209 815 CpG island CpG island 14299
4930412L05Rik 4 53205066 to 53217857 12791 - lncRNA gene RIKEN cDNA 4930412L05 gene
Cpgi14300 4 53217493 to 53218050 557 CpG island CpG island 14300
Tssr37289 4 53227338 to 53227378 40 + TSS region transcription start site region 37289
Tssr37290 4 53246174 to 53246182 8 + TSS region transcription start site region 37290
Tssr37291 4 53246184 to 53246202 18 + TSS region transcription start site region 37291
4930522O17Rik 4 53246196 to 53251115 4919 + antisense lncRNA gene RIKEN cDNA 4930522O17 gene
Tssr37292 4 53246206 to 53246213 7 + TSS region transcription start site region 37292
Tssr37293 4 53246216 to 53246227 11 + TSS region transcription start site region 37293
AI427809 4 53261356 to 53270232 8876 - lincRNA gene expressed sequence AI427809
Gm12495 4 53308226 to 53308672 446 + pseudogene predicted gene 12495
D4Mit163 4 53312081 to 53312216 135 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 163
Tssr41768 4 53339817 to 53339844 27 - TSS region transcription start site region 41768
Tssr37294 4 53340117 to 53340128 11 + TSS region transcription start site region 37294
Tssr37295 4 53341415 to 53341423 8 + TSS region transcription start site region 37295
Gm12496 4 53401948 to 53404030 2082 - lincRNA gene predicted gene 12496
D4Mit272 4 53402473 to 53402649 176 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 272
Tssr41769 4 53403563 to 53403574 11 - TSS region transcription start site region 41769
Tssr41770 4 53410887 to 53410900 13 - TSS region transcription start site region 41770
Gm46858 4 53438009 to 53440685 2676 - protein coding gene predicted gene, 46858
Cpgi14301 4 53439729 to 53441501 1772 CpG island CpG island 14301
Tssr37296 4 53440388 to 53440502 114 + TSS region transcription start site region 37296
Slc44a1 4 53440413 to 53622478 182065 + protein coding gene solute carrier family 44, member 1
Tssr37297 4 53440516 to 53440548 32 + TSS region transcription start site region 37297
Tssr37298 4 53456896 to 53456898 2 + TSS region transcription start site region 37298
Cpgi14302 4 53475311 to 53475498 187 CpG island CpG island 14302
Abbp2 4 53550839 to 93875068 40324229 QTL A/J and C57BL/6 blood pressure 2
Mopkd1 4 53550839 to 53550967 128 QTL modifier of polycystic kidney disease progression 1
D4Mit111 4 53550839 to 53550967 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 111
nmf111 4 53550839 to 79603773 26052934 heritable phenotypic marker neuroscience mutagenesis facility, 111
Nmf191 4 53550839 to 86450248 32899409 heritable phenotypic marker neuroscience mutagenesis facility, 191
1700060J05Rik 4 53562983 to 53564697 1714 - antisense lncRNA gene RIKEN cDNA 1700060J05 gene
Tssr41771 4 53564681 to 53564706 25 - TSS region transcription start site region 41771
Tssr37299 4 53566192 to 53566198 6 + TSS region transcription start site region 37299
Tssr37300 4 53566586 to 53566592 6 + TSS region transcription start site region 37300
9130223C08Rik 4 53572439 to 53573033 594 unclassified gene RIKEN cDNA 9130223C08 gene
Gm33729 4 53583196 to 53629872 46676 - lncRNA gene predicted gene, 33729
Cpgi14303 4 53630971 to 53632139 1168 CpG island CpG island 14303
Tssr37301 4 53631396 to 53631457 61 + TSS region transcription start site region 37301
Tssr37302 4 53631460 to 53631505 45 + TSS region transcription start site region 37302
Fsd1l 4 53631471 to 53707009 75538 + protein coding gene fibronectin type III and SPRY domain containing 1-like
Tssr37303 4 53631506 to 53631520 14 + TSS region transcription start site region 37303
Tssr41772 4 53632047 to 53632058 11 - TSS region transcription start site region 41772
Gm12470 4 53662305 to 53663341 1036 + pseudogene predicted gene 12470
Tssr37304 4 53712667 to 53712676 9 + TSS region transcription start site region 37304
Fktn 4 53712729 to 53765785 53056 + protein coding gene fukutin
Cpgi14304 4 53713943 to 53714774 831 CpG island CpG island 14304
Tssr37305 4 53714142 to 53714199 57 + TSS region transcription start site region 37305
Gm25445 4 53720902 to 53721200 298 - unclassified non-coding RNA gene predicted gene, 25445
Cpgi14305 4 53779437 to 53779920 483 CpG island CpG island 14305
Tssr37306 4 53779694 to 53779706 12 + TSS region transcription start site region 37306
Tal2 4 53779705 to 53786885 7180 + protein coding gene T cell acute lymphocytic leukemia 2
Rps15a-ps8 4 53791070 to 53791456 386 - pseudogene ribosomal protein S15A, pseudogene 8
D4Mit184 4 53796566 to 53796668 102 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 184
Tssr41773 4 53825883 to 53825893 10 - TSS region transcription start site region 41773
Cpgi14306 4 53825944 to 53826484 540 CpG island CpG island 14306
Tssr37307 4 53826014 to 53826107 93 + TSS region transcription start site region 37307
Tmem38b 4 53826045 to 53862019 35974 + protein coding gene transmembrane protein 38B
Tssr37308 4 53826162 to 53826186 24 + TSS region transcription start site region 37308
D4Mit240 4 53828853 to 53828978 125 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 240
Tssr37309 4 53832570 to 53832582 12 + TSS region transcription start site region 37309
Tssr37310 4 53835122 to 53835123 1 + TSS region transcription start site region 37310
Cpgi14307 4 53859998 to 53860159 161 CpG island CpG island 14307
n-R5s185 4 53860652 to 53860770 118 + rRNA gene nuclear encoded rRNA 5S 185
Gm12468 4 53877925 to 53878328 403 + pseudogene predicted gene 12468
Cpgi14308 4 53878656 to 53879062 406 CpG island CpG island 14308
Gm23745 4 53905696 to 53905820 124 + snoRNA gene predicted gene, 23745
Gm33840 4 53948265 to 53951306 3041 - lncRNA gene predicted gene, 33840
D4Mit320 4 53973679 to 53973791 112 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 320
Gm24177 4 54004057 to 54004187 130 + snoRNA gene predicted gene, 24177
Tssr41774 4 54028746 to 54028753 7 - TSS region transcription start site region 41774
Gm33893 4 54029718 to 54070691 40973 + lncRNA gene predicted gene, 33893
Skts-fp1 4 124161387 to 53550839 -70610548 QTL skin tumor susceptibility in FVB and PWK 1