Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:52086274-53122424

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D4Mit88 4 52154171 to 52154335 164 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 88
Tssr41707 4 52197211 to 52197217 6 - TSS region transcription start site region 41707
Tssr37273 4 52240860 to 52240872 12 + TSS region transcription start site region 37273
Gm12466 4 52240903 to 52241522 619 + pseudogene predicted gene 12466
Gm12467 4 52241712 to 52242456 744 + pseudogene predicted gene 12467
Gm12475 4 52360826 to 52362211 1385 - pseudogene predicted gene 12475
Smc2os 4 52430284 to 52438964 8680 - antisense lncRNA gene structural maintenance of chromosomes 2, opposite strand
Cpgi14294 4 52438884 to 52439658 774 CpG island CpG island 14294
Tssr37274 4 52439224 to 52439232 8 + TSS region transcription start site region 37274
Tssr37275 4 52439235 to 52439287 52 + TSS region transcription start site region 37275
Smc2 4 52439243 to 52488260 49017 + protein coding gene structural maintenance of chromosomes 2
Tssr37276 4 52440108 to 52440113 5 + TSS region transcription start site region 37276
Tmc4-ps 4 52443915 to 52444172 257 - pseudogene Tmc4 retrotransposed pseudogene
Tssr41708 4 52445415 to 52445440 25 - TSS region transcription start site region 41708
Tssr37277 4 52450856 to 52450866 10 + TSS region transcription start site region 37277
Tssr1174 4 52462964 to 52462977 13 + TSS region transcription start site region 1174
Tssr37278 4 52465928 to 52465941 13 + TSS region transcription start site region 37278
Vma21-ps 4 52496939 to 52497244 305 - pseudogene VMA21 vacuolar H+-ATPase homolog (S. cerevisiae), pseudogene
Tssr37279 4 52596270 to 52596276 6 + TSS region transcription start site region 37279
Toporsl 4 52596274 to 52612424 16150 + protein coding gene topoisomerase I binding, arginine/serine-rich like
Tssr37280 4 52596285 to 52596299 14 + TSS region transcription start site region 37280
Tssr37281 4 52607204 to 52607215 11 + TSS region transcription start site region 37281
Gm33435 4 52615448 to 52617881 2433 - lncRNA gene predicted gene, 33435
Tssr41709 4 52814517 to 52814567 50 - TSS region transcription start site region 41709
Tssr37282 4 52814594 to 52814629 35 + TSS region transcription start site region 37282
4930552N02Rik 4 52814604 to 52828269 13665 + lncRNA gene RIKEN cDNA 4930552N02 gene
Gm12482 4 52821488 to 52822117 629 + pseudogene predicted gene 12482
Olfr275 4 52825399 to 52826358 959 + protein coding gene olfactory receptor 275
D4Nds6 4 52838743 to 52838888 145 DNA segment DNA segment, Chr 4, Nuffield Department of Surgery 6
Olfr274-ps1 4 52842198 to 52843026 828 - pseudogene olfactory receptor 274, pseudogene 1
Olfr273 4 52855558 to 52856511 953 - protein coding gene olfactory receptor 273
D4Mit110 4 52859707 to 52859853 146 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 110
Hdlq10 4 52859707 to 52859853 146 QTL HDL QTL 10
Gm47786 4 52878008 to 52878702 694 + pseudogene predicted gene, 47786
Cpgi14295 4 52880954 to 52881131 177 CpG island CpG island 14295
Cct3-ps1 4 52900599 to 52902683 2084 + pseudogene chaperonin containing Tcp1, subunit 3 (gamma) pseudogene 1
Tssr37283 4 52900608 to 52900620 12 + TSS region transcription start site region 37283
Olfr272 4 52910833 to 52911792 959 - protein coding gene olfactory receptor 272
Olfr271-ps1 4 52935430 to 52936381 951 - polymorphic pseudogene olfactory receptor 271, pseudogene 1
Gm33479 4 52944344 to 52958773 14429 - lncRNA gene predicted gene, 33479
Olfr270 4 52970629 to 52971567 938 + protein coding gene olfactory receptor 270
Cpgi14296 4 52989216 to 52989475 259 CpG island CpG island 14296
Tssr37284 4 52989271 to 52989308 37 + TSS region transcription start site region 37284
Nipsnap3a 4 52989284 to 53000854 11570 + protein coding gene nipsnap homolog 3A
Cpgi14297 4 53011591 to 53012596 1005 CpG island CpG island 14297
Nipsnap3b 4 53011880 to 53022060 10180 + protein coding gene nipsnap homolog 3B
Tssr37285 4 53011894 to 53011907 13 + TSS region transcription start site region 37285
Tssr37286 4 53011916 to 53011978 62 + TSS region transcription start site region 37286
Tssr41710 4 53029119 to 53029126 7 - TSS region transcription start site region 41710
Abca1 4 53030787 to 53159895 129108 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 1
Tssr41711 4 53031542 to 53031553 11 - TSS region transcription start site region 41711
Tssr41712 4 53031559 to 53031570 11 - TSS region transcription start site region 41712
Tssr41713 4 53031650 to 53031662 12 - TSS region transcription start site region 41713
Tssr41714 4 53031716 to 53031723 7 - TSS region transcription start site region 41714
Tssr41715 4 53031777 to 53031791 14 - TSS region transcription start site region 41715
Tssr41716 4 53031796 to 53031806 10 - TSS region transcription start site region 41716
Tssr41717 4 53032105 to 53032139 34 - TSS region transcription start site region 41717
Tssr41718 4 53032180 to 53032198 18 - TSS region transcription start site region 41718
Tssr41719 4 53032205 to 53032217 12 - TSS region transcription start site region 41719
Tssr41720 4 53032223 to 53032265 42 - TSS region transcription start site region 41720
Tssr41721 4 53032268 to 53032280 12 - TSS region transcription start site region 41721
Tssr41722 4 53032294 to 53032305 11 - TSS region transcription start site region 41722
Tssr41723 4 53032309 to 53032340 31 - TSS region transcription start site region 41723
Tssr41724 4 53032344 to 53032395 51 - TSS region transcription start site region 41724
Tssr41725 4 53032401 to 53032426 25 - TSS region transcription start site region 41725
Tssr41726 4 53032446 to 53032464 18 - TSS region transcription start site region 41726
Tssr41727 4 53032478 to 53032497 19 - TSS region transcription start site region 41727
Tssr41728 4 53032611 to 53032624 13 - TSS region transcription start site region 41728
Tssr41729 4 53032813 to 53032830 17 - TSS region transcription start site region 41729
Tssr41730 4 53033047 to 53033070 23 - TSS region transcription start site region 41730
Tssr41731 4 53033118 to 53033130 12 - TSS region transcription start site region 41731
Tssr41732 4 53033749 to 53033767 18 - TSS region transcription start site region 41732
Tssr41733 4 53043282 to 53043302 20 - TSS region transcription start site region 41733
Tssr41734 4 53065789 to 53065791 2 - TSS region transcription start site region 41734
Tssr41735 4 53094910 to 53094917 7 - TSS region transcription start site region 41735
Tssr41736 4 53096399 to 53096420 21 - TSS region transcription start site region 41736
Tssr41737 4 53104518 to 53104565 47 - TSS region transcription start site region 41737
Tssr41738 4 53109319 to 53109323 4 - TSS region transcription start site region 41738
Tssr41739 4 53112525 to 53112559 34 - TSS region transcription start site region 41739
Tssr41740 4 53113336 to 53113411 75 - TSS region transcription start site region 41740
Tssr41741 4 53113414 to 53113439 25 - TSS region transcription start site region 41741
Tssr41742 4 53113467 to 53113491 24 - TSS region transcription start site region 41742
Tssr41743 4 53113497 to 53113509 12 - TSS region transcription start site region 41743
Tssr41744 4 53116219 to 53116262 43 - TSS region transcription start site region 41744
Tssr41745 4 53117966 to 53117983 17 - TSS region transcription start site region 41745
Tssr41746 4 53118823 to 53118867 44 - TSS region transcription start site region 41746
Tssr37287 4 53120670 to 53120700 30 + TSS region transcription start site region 37287