Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:49555730-50135774

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr37262 4 49559979 to 49559983 4 + TSS region transcription start site region 37262
Tmem246 4 49584506 to 49597870 13364 - protein coding gene transmembrane protein 246
Tssr41691 4 49593875 to 49593915 40 - TSS region transcription start site region 41691
Cpgi14290 4 49596860 to 49597884 1024 CpG island CpG island 14290
Tssr41692 4 49597231 to 49597268 37 - TSS region transcription start site region 41692
Tssr41693 4 49597402 to 49597416 14 - TSS region transcription start site region 41693
Tssr41694 4 49597425 to 49597493 68 - TSS region transcription start site region 41694
Tssr41695 4 49597708 to 49597777 69 - TSS region transcription start site region 41695
Tssr41696 4 49597785 to 49597830 45 - TSS region transcription start site region 41696
Tssr41697 4 49597837 to 49597849 12 - TSS region transcription start site region 41697
Tssr41698 4 49597860 to 49597892 32 - TSS region transcription start site region 41698
Gm33106 4 49597989 to 49599772 1783 + lncRNA gene predicted gene, 33106
Gm33159 4 49608027 to 49617796 9769 - lncRNA gene predicted gene, 33159
Gm45952 4 49630658 to 49631946 1288 - lncRNA gene predicted gene, 45952
Cpgi14291 4 49631827 to 49632547 720 CpG island CpG island 14291
Tssr41699 4 49631940 to 49631963 23 - TSS region transcription start site region 41699
Tssr37263 4 49631999 to 49632010 11 + TSS region transcription start site region 37263
Rnf20 4 49632006 to 49656887 24881 + protein coding gene ring finger protein 20
Tssr37264 4 49632046 to 49632110 64 + TSS region transcription start site region 37264
Tssr37265 4 49632134 to 49632139 5 + TSS region transcription start site region 37265
Tssr37266 4 49650092 to 49650110 18 + TSS region transcription start site region 37266
Grin3a 4 49661611 to 49845744 184133 - protein coding gene glutamate receptor ionotropic, NMDA3A
Ppp3r2 4 49678747 to 49681983 3236 - protein coding gene protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II)
Cpgi14292 4 49681631 to 49682028 397 CpG island CpG island 14292
Tssr41700 4 49681956 to 49682038 82 - TSS region transcription start site region 41700
Gm42286 4 49682004 to 49692792 10788 + lncRNA gene predicted gene, 42286
Tssr41701 4 49682377 to 49682385 8 - TSS region transcription start site region 41701
Gm12459 4 49746731 to 49747246 515 - pseudogene predicted gene 12459
Tssr41702 4 49747259 to 49747271 12 - TSS region transcription start site region 41702
Cpgi14293 4 49844295 to 49846056 1761 CpG island CpG island 14293
Tssr41703 4 49844885 to 49844887 2 - TSS region transcription start site region 41703
Tssr41704 4 49845730 to 49845774 44 - TSS region transcription start site region 41704
Tssr41705 4 49845853 to 49845863 10 - TSS region transcription start site region 41705
Gm12458 4 50050909 to 50051403 494 - pseudogene predicted gene 12458