Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:49530117-57150128

Filter by:
462 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
vsd 4 39452126 to 56769494 17317368 heritable phenotypic marker ventricular septal defect
Agnm1 4 46332646 to 55755867 9423221 QTL autoimmune glomerulonephritis in MRL 1
Zfp189 4 49521176 to 49531517 10341 + protein coding gene zinc finger protein 189
1110065F06Rik 4 49532183 to 49533792 1609 unclassified gene RIKEN cDNA 1110065F06 gene
Aldob 4 49535995 to 49549546 13551 - protein coding gene aldolase B, fructose-bisphosphate
Tssr37259 4 49536505 to 49536557 52 + TSS region transcription start site region 37259
Tssr41664 4 49536607 to 49536621 14 - TSS region transcription start site region 41664
Tssr41665 4 49536632 to 49536643 11 - TSS region transcription start site region 41665
Tssr41666 4 49536645 to 49536656 11 - TSS region transcription start site region 41666
Tssr37260 4 49536645 to 49536665 20 + TSS region transcription start site region 37260
Tssr41667 4 49536682 to 49536694 12 - TSS region transcription start site region 41667
Tssr41668 4 49536735 to 49536753 18 - TSS region transcription start site region 41668
Tssr41669 4 49536789 to 49536800 11 - TSS region transcription start site region 41669
Tssr1171 4 49536802 to 49536806 4 - TSS region transcription start site region 1171
Tssr1172 4 49536812 to 49536815 3 - TSS region transcription start site region 1172
Tssr41670 4 49536816 to 49536849 33 - TSS region transcription start site region 41670
Tssr41671 4 49536854 to 49536876 22 - TSS region transcription start site region 41671
Tssr41672 4 49536882 to 49536901 19 - TSS region transcription start site region 41672
Tssr41673 4 49538160 to 49538206 46 - TSS region transcription start site region 41673
Tssr41674 4 49538250 to 49538266 16 - TSS region transcription start site region 41674
Tssr41675 4 49538269 to 49538302 33 - TSS region transcription start site region 41675
Tssr41676 4 49538741 to 49538900 159 - TSS region transcription start site region 41676
Tssr41677 4 49539757 to 49539779 22 - TSS region transcription start site region 41677
Tssr41678 4 49540879 to 49540901 22 - TSS region transcription start site region 41678
Tssr41679 4 49541178 to 49541249 71 - TSS region transcription start site region 41679
Tssr41680 4 49541273 to 49541295 22 - TSS region transcription start site region 41680
Tssr41681 4 49542591 to 49542601 10 - TSS region transcription start site region 41681
Tssr41682 4 49542826 to 49542858 32 - TSS region transcription start site region 41682
Tssr41683 4 49544879 to 49544908 29 - TSS region transcription start site region 41683
Tssr41684 4 49544912 to 49544925 13 - TSS region transcription start site region 41684
Tssr41685 4 49546734 to 49546738 4 - TSS region transcription start site region 41685
Tssr41686 4 49547931 to 49547947 16 - TSS region transcription start site region 41686
Tssr41687 4 49549221 to 49549228 7 - TSS region transcription start site region 41687
Tssr41688 4 49549244 to 49549253 9 - TSS region transcription start site region 41688
Tssr41689 4 49549485 to 49549514 29 - TSS region transcription start site region 41689
Tssr41690 4 49549523 to 49549538 15 - TSS region transcription start site region 41690
Tssr37261 4 49549669 to 49549705 36 + TSS region transcription start site region 37261
D4Mit215 4 49552570 to 49552718 148 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 215
Tssr37262 4 49559979 to 49559983 4 + TSS region transcription start site region 37262
Tmem246 4 49584506 to 49597870 13364 - protein coding gene transmembrane protein 246
Tssr41691 4 49593875 to 49593915 40 - TSS region transcription start site region 41691
Cpgi14290 4 49596860 to 49597884 1024 CpG island CpG island 14290
Tssr41692 4 49597231 to 49597268 37 - TSS region transcription start site region 41692
Tssr41693 4 49597402 to 49597416 14 - TSS region transcription start site region 41693
Tssr41694 4 49597425 to 49597493 68 - TSS region transcription start site region 41694
Tssr41695 4 49597708 to 49597777 69 - TSS region transcription start site region 41695
Tssr41696 4 49597785 to 49597830 45 - TSS region transcription start site region 41696
Tssr41697 4 49597837 to 49597849 12 - TSS region transcription start site region 41697
Tssr41698 4 49597860 to 49597892 32 - TSS region transcription start site region 41698
Gm33106 4 49597989 to 49599772 1783 + lncRNA gene predicted gene, 33106
Gm33159 4 49608027 to 49617796 9769 - lncRNA gene predicted gene, 33159
Gm45952 4 49630658 to 49631946 1288 - lncRNA gene predicted gene, 45952
Cpgi14291 4 49631827 to 49632547 720 CpG island CpG island 14291
Tssr41699 4 49631940 to 49631963 23 - TSS region transcription start site region 41699
Tssr37263 4 49631999 to 49632010 11 + TSS region transcription start site region 37263
Rnf20 4 49632006 to 49656887 24881 + protein coding gene ring finger protein 20
Tssr37264 4 49632046 to 49632110 64 + TSS region transcription start site region 37264
Tssr37265 4 49632134 to 49632139 5 + TSS region transcription start site region 37265
Tssr37266 4 49650092 to 49650110 18 + TSS region transcription start site region 37266
Grin3a 4 49661611 to 49845744 184133 - protein coding gene glutamate receptor ionotropic, NMDA3A
Ppp3r2 4 49678747 to 49681983 3236 - protein coding gene protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II)
Cpgi14292 4 49681631 to 49682028 397 CpG island CpG island 14292
Tssr41700 4 49681956 to 49682038 82 - TSS region transcription start site region 41700
Gm42286 4 49682004 to 49692792 10788 + lncRNA gene predicted gene, 42286
Tssr41701 4 49682377 to 49682385 8 - TSS region transcription start site region 41701
Gm12459 4 49746731 to 49747246 515 - pseudogene predicted gene 12459
Tssr41702 4 49747259 to 49747271 12 - TSS region transcription start site region 41702
Cpgi14293 4 49844295 to 49846056 1761 CpG island CpG island 14293
Tssr41703 4 49844885 to 49844887 2 - TSS region transcription start site region 41703
Tssr41704 4 49845730 to 49845774 44 - TSS region transcription start site region 41704
Tssr41705 4 49845853 to 49845863 10 - TSS region transcription start site region 41705
Gm12458 4 50050909 to 50051403 494 - pseudogene predicted gene 12458
Tssr37267 4 50177582 to 50177587 5 + TSS region transcription start site region 37267
Gm25485 4 50286746 to 50286877 131 + snoRNA gene predicted gene, 25485
Tssr37268 4 50485292 to 50485294 2 + TSS region transcription start site region 37268
Spir2 4 50682795 to 88592400 37909605 QTL Streptococcus pneumoniae infection resistance 2
Gm42288 4 50788227 to 50827001 38774 - lncRNA gene predicted gene, 42288
Tssr37269 4 50789615 to 50789622 7 + TSS region transcription start site region 37269
Gm42287 4 50789624 to 50903726 114102 + lncRNA gene predicted gene, 42287
Tssr41706 4 50827118 to 50827126 8 - TSS region transcription start site region 41706
Gm12460 4 51190107 to 51190463 356 + pseudogene predicted gene 12460
Tssr37270 4 51216648 to 51216683 35 + TSS region transcription start site region 37270
Cylc2 4 51216678 to 51230272 13594 + protein coding gene cylicin, basic protein of sperm head cytoskeleton 2
Tssr37271 4 51229777 to 51229782 5 + TSS region transcription start site region 37271
Amd-ps4 4 51253025 to 51254027 1002 - pseudogene S-adenosylmethionine decarboxylase, pseudogene 4
Gm22563 4 51540747 to 51541015 268 + unclassified non-coding RNA gene predicted gene, 22563
Gm23043 4 51655767 to 51655875 108 + snoRNA gene predicted gene, 23043
Tssr37272 4 51659191 to 51659193 2 + TSS region transcription start site region 37272
Gm24943 4 51799920 to 51800352 432 + ribozyme gene predicted gene, 24943
Gm22042 4 51812483 to 51812647 164 - snRNA gene predicted gene, 22042
Tssr1173 4 51812643 to 51812647 4 - TSS region transcription start site region 1173
Gm46854 4 51876647 to 51877430 783 + lncRNA gene predicted gene, 46854
Gm12461 4 51892893 to 51894131 1238 + pseudogene predicted gene 12461
C630028M04Rik 4 51968094 to 52051110 83016 - lincRNA gene RIKEN cDNA C630028M04 gene
Gm12465 4 52077168 to 52077467 299 - pseudogene predicted gene 12465
D4Mit88 4 52154171 to 52154335 164 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 88
Tssr41707 4 52197211 to 52197217 6 - TSS region transcription start site region 41707
Tssr37273 4 52240860 to 52240872 12 + TSS region transcription start site region 37273
Gm12466 4 52240903 to 52241522 619 + pseudogene predicted gene 12466
Gm12467 4 52241712 to 52242456 744 + pseudogene predicted gene 12467
Gm12475 4 52360826 to 52362211 1385 - pseudogene predicted gene 12475
Smc2os 4 52430284 to 52438964 8680 - antisense lncRNA gene structural maintenance of chromosomes 2, opposite strand
Cpgi14294 4 52438884 to 52439658 774 CpG island CpG island 14294
Tssr37274 4 52439224 to 52439232 8 + TSS region transcription start site region 37274
Tssr37275 4 52439235 to 52439287 52 + TSS region transcription start site region 37275
Smc2 4 52439243 to 52488260 49017 + protein coding gene structural maintenance of chromosomes 2
Tssr37276 4 52440108 to 52440113 5 + TSS region transcription start site region 37276
Tmc4-ps 4 52443915 to 52444172 257 - pseudogene Tmc4 retrotransposed pseudogene
Tssr41708 4 52445415 to 52445440 25 - TSS region transcription start site region 41708
Tssr37277 4 52450856 to 52450866 10 + TSS region transcription start site region 37277
Tssr1174 4 52462964 to 52462977 13 + TSS region transcription start site region 1174
Tssr37278 4 52465928 to 52465941 13 + TSS region transcription start site region 37278
Vma21-ps 4 52496939 to 52497244 305 - pseudogene VMA21 vacuolar H+-ATPase homolog (S. cerevisiae), pseudogene
Tssr37279 4 52596270 to 52596276 6 + TSS region transcription start site region 37279
Toporsl 4 52596274 to 52612424 16150 + protein coding gene topoisomerase I binding, arginine/serine-rich like
Tssr37280 4 52596285 to 52596299 14 + TSS region transcription start site region 37280
Tssr37281 4 52607204 to 52607215 11 + TSS region transcription start site region 37281
Gm33435 4 52615448 to 52617881 2433 - lncRNA gene predicted gene, 33435
Tssr41709 4 52814517 to 52814567 50 - TSS region transcription start site region 41709
Tssr37282 4 52814594 to 52814629 35 + TSS region transcription start site region 37282
4930552N02Rik 4 52814604 to 52828269 13665 + lncRNA gene RIKEN cDNA 4930552N02 gene
Gm12482 4 52821488 to 52822117 629 + pseudogene predicted gene 12482
Olfr275 4 52825399 to 52826358 959 + protein coding gene olfactory receptor 275
D4Nds6 4 52838743 to 52838888 145 DNA segment DNA segment, Chr 4, Nuffield Department of Surgery 6
Olfr274-ps1 4 52842198 to 52843026 828 - pseudogene olfactory receptor 274, pseudogene 1
Olfr273 4 52855558 to 52856511 953 - protein coding gene olfactory receptor 273
Hdlq10 4 52859707 to 52859853 146 QTL HDL QTL 10
D4Mit110 4 52859707 to 52859853 146 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 110
Gm47786 4 52878008 to 52878702 694 + pseudogene predicted gene, 47786
Cpgi14295 4 52880954 to 52881131 177 CpG island CpG island 14295
Cct3-ps1 4 52900599 to 52902683 2084 + pseudogene chaperonin containing Tcp1, subunit 3 (gamma) pseudogene 1
Tssr37283 4 52900608 to 52900620 12 + TSS region transcription start site region 37283
Olfr272 4 52910833 to 52911792 959 - protein coding gene olfactory receptor 272
Olfr271-ps1 4 52935430 to 52936381 951 - polymorphic pseudogene olfactory receptor 271, pseudogene 1
Gm33479 4 52944344 to 52958773 14429 - lncRNA gene predicted gene, 33479
Olfr270 4 52970629 to 52971567 938 + protein coding gene olfactory receptor 270
Cpgi14296 4 52989216 to 52989475 259 CpG island CpG island 14296
Tssr37284 4 52989271 to 52989308 37 + TSS region transcription start site region 37284
Nipsnap3a 4 52989284 to 53000854 11570 + protein coding gene nipsnap homolog 3A
Cpgi14297 4 53011591 to 53012596 1005 CpG island CpG island 14297
Nipsnap3b 4 53011880 to 53022060 10180 + protein coding gene nipsnap homolog 3B
Tssr37285 4 53011894 to 53011907 13 + TSS region transcription start site region 37285
Tssr37286 4 53011916 to 53011978 62 + TSS region transcription start site region 37286
Tssr41710 4 53029119 to 53029126 7 - TSS region transcription start site region 41710
Abca1 4 53030787 to 53159895 129108 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 1
Tssr41711 4 53031542 to 53031553 11 - TSS region transcription start site region 41711
Tssr41712 4 53031559 to 53031570 11 - TSS region transcription start site region 41712
Tssr41713 4 53031650 to 53031662 12 - TSS region transcription start site region 41713
Tssr41714 4 53031716 to 53031723 7 - TSS region transcription start site region 41714
Tssr41715 4 53031777 to 53031791 14 - TSS region transcription start site region 41715
Tssr41716 4 53031796 to 53031806 10 - TSS region transcription start site region 41716
Tssr41717 4 53032105 to 53032139 34 - TSS region transcription start site region 41717
Tssr41718 4 53032180 to 53032198 18 - TSS region transcription start site region 41718
Tssr41719 4 53032205 to 53032217 12 - TSS region transcription start site region 41719
Tssr41720 4 53032223 to 53032265 42 - TSS region transcription start site region 41720
Tssr41721 4 53032268 to 53032280 12 - TSS region transcription start site region 41721
Tssr41722 4 53032294 to 53032305 11 - TSS region transcription start site region 41722
Tssr41723 4 53032309 to 53032340 31 - TSS region transcription start site region 41723
Tssr41724 4 53032344 to 53032395 51 - TSS region transcription start site region 41724
Tssr41725 4 53032401 to 53032426 25 - TSS region transcription start site region 41725
Tssr41726 4 53032446 to 53032464 18 - TSS region transcription start site region 41726
Tssr41727 4 53032478 to 53032497 19 - TSS region transcription start site region 41727
Tssr41728 4 53032611 to 53032624 13 - TSS region transcription start site region 41728
Tssr41729 4 53032813 to 53032830 17 - TSS region transcription start site region 41729
Tssr41730 4 53033047 to 53033070 23 - TSS region transcription start site region 41730
Tssr41731 4 53033118 to 53033130 12 - TSS region transcription start site region 41731
Tssr41732 4 53033749 to 53033767 18 - TSS region transcription start site region 41732
Tssr41733 4 53043282 to 53043302 20 - TSS region transcription start site region 41733
Tssr41734 4 53065789 to 53065791 2 - TSS region transcription start site region 41734
Tssr41735 4 53094910 to 53094917 7 - TSS region transcription start site region 41735
Tssr41736 4 53096399 to 53096420 21 - TSS region transcription start site region 41736
Tssr41737 4 53104518 to 53104565 47 - TSS region transcription start site region 41737
Tssr41738 4 53109319 to 53109323 4 - TSS region transcription start site region 41738
Tssr41739 4 53112525 to 53112559 34 - TSS region transcription start site region 41739
Tssr41740 4 53113336 to 53113411 75 - TSS region transcription start site region 41740
Tssr41741 4 53113414 to 53113439 25 - TSS region transcription start site region 41741
Tssr41742 4 53113467 to 53113491 24 - TSS region transcription start site region 41742
Tssr41743 4 53113497 to 53113509 12 - TSS region transcription start site region 41743
Tssr41744 4 53116219 to 53116262 43 - TSS region transcription start site region 41744
Tssr41745 4 53117966 to 53117983 17 - TSS region transcription start site region 41745
Tssr41746 4 53118823 to 53118867 44 - TSS region transcription start site region 41746
Tssr37287 4 53120670 to 53120700 30 + TSS region transcription start site region 37287
Tssr41747 4 53127924 to 53127953 29 - TSS region transcription start site region 41747
Tssr41748 4 53128114 to 53128134 20 - TSS region transcription start site region 41748
Tssr37288 4 53128818 to 53128835 17 + TSS region transcription start site region 37288
Tssr41749 4 53130852 to 53130869 17 - TSS region transcription start site region 41749
Tssr41750 4 53130878 to 53130911 33 - TSS region transcription start site region 41750
Tssr41751 4 53130963 to 53130974 11 - TSS region transcription start site region 41751
Tssr41752 4 53130991 to 53131004 13 - TSS region transcription start site region 41752
Tssr41753 4 53131091 to 53131103 12 - TSS region transcription start site region 41753
Tssr41754 4 53137048 to 53137050 2 - TSS region transcription start site region 41754
Tssr1175 4 53142629 to 53142639 10 - TSS region transcription start site region 1175
Tssr41755 4 53142739 to 53142755 16 - TSS region transcription start site region 41755
Tssr41756 4 53142756 to 53142769 13 - TSS region transcription start site region 41756
Tssr41757 4 53142778 to 53142789 11 - TSS region transcription start site region 41757
Tssr41758 4 53144024 to 53144037 13 - TSS region transcription start site region 41758
Tssr41759 4 53144060 to 53144088 28 - TSS region transcription start site region 41759
Tssr41760 4 53144091 to 53144111 20 - TSS region transcription start site region 41760
Tssr41761 4 53144225 to 53144241 16 - TSS region transcription start site region 41761
Tssr41762 4 53144253 to 53144264 11 - TSS region transcription start site region 41762