Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:48103558-49693565

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168 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi14282 4 48124725 to 48125419 694 CpG island CpG island 14282
Tssr37225 4 48124903 to 48124938 35 + TSS region transcription start site region 37225
Stx17 4 48124915 to 48186507 61592 + protein coding gene syntaxin 17
Tssr37226 4 48124944 to 48124955 11 + TSS region transcription start site region 37226
Erp44 4 48193323 to 48279558 86235 - protein coding gene endoplasmic reticulum protein 44
Mir1958 4 48213119 to 48213215 96 - miRNA gene microRNA 1958
Cpgi14283 4 48279095 to 48280127 1032 CpG island CpG island 14283
Tssr41637 4 48279502 to 48279515 13 - TSS region transcription start site region 41637
Tssr41638 4 48279544 to 48279613 69 - TSS region transcription start site region 41638
Invs 4 48279760 to 48431954 152194 + protein coding gene inversin
Tssr37227 4 48279794 to 48279852 58 + TSS region transcription start site region 37227
Tssr1170 4 48279857 to 48279881 24 + TSS region transcription start site region 1170
Gm12435 4 48344215 to 48345230 1015 - pseudogene predicted gene 12435
C030004N09Rik 4 48427728 to 48429230 1502 unclassified gene RIKEN cDNA C030004N09 gene
Tex10 4 48430858 to 48473459 42601 - protein coding gene testis expressed gene 10
Tssr41639 4 48435004 to 48435017 13 - TSS region transcription start site region 41639
Tssr41640 4 48435099 to 48435108 9 - TSS region transcription start site region 41640
Tssr41641 4 48442128 to 48442131 3 - TSS region transcription start site region 41641
Tssr41642 4 48468791 to 48468819 28 - TSS region transcription start site region 41642
Cpgi14284 4 48472788 to 48473684 896 CpG island CpG island 14284
Tssr41643 4 48473339 to 48473356 17 - TSS region transcription start site region 41643
Tssr41644 4 48473382 to 48473401 19 - TSS region transcription start site region 41644
Tssr41645 4 48473403 to 48473457 54 - TSS region transcription start site region 41645
Cpgi14285 4 48539838 to 48541148 1310 CpG island CpG island 14285
Tssr37228 4 48539909 to 48539924 15 + TSS region transcription start site region 37228
Msantd3 4 48539935 to 48561919 21984 + protein coding gene Myb/SANT-like DNA-binding domain containing 3
Tssr37229 4 48540067 to 48540086 19 + TSS region transcription start site region 37229
Tssr37230 4 48540118 to 48540138 20 + TSS region transcription start site region 37230
Tssr37231 4 48540152 to 48540167 15 + TSS region transcription start site region 37231
Tssr37232 4 48540347 to 48540368 21 + TSS region transcription start site region 37232
Tssr37233 4 48540381 to 48540411 30 + TSS region transcription start site region 37233
Tssr37234 4 48540419 to 48540502 83 + TSS region transcription start site region 37234
Cpgi14286 4 48584497 to 48586266 1769 CpG island CpG island 14286
Tssr37235 4 48585081 to 48585134 53 + TSS region transcription start site region 37235
Tssr37236 4 48585135 to 48585187 52 + TSS region transcription start site region 37236
Tmeff1 4 48585174 to 48663131 77957 + protein coding gene transmembrane protein with EGF-like and two follistatin-like domains 1
Tssr37237 4 48585198 to 48585215 17 + TSS region transcription start site region 37237
Tssr37238 4 48585227 to 48585245 18 + TSS region transcription start site region 37238
Tssr37239 4 48585248 to 48585268 20 + TSS region transcription start site region 37239
Tssr37240 4 48585276 to 48585328 52 + TSS region transcription start site region 37240
Tssr37241 4 48586991 to 48587000 9 + TSS region transcription start site region 37241
Tssr37242 4 48588646 to 48588650 4 + TSS region transcription start site region 37242
Tssr37243 4 48610441 to 48610448 7 + TSS region transcription start site region 37243
Tssr37244 4 48610488 to 48610507 19 + TSS region transcription start site region 37244
Tssr37245 4 48615530 to 48615535 5 + TSS region transcription start site region 37245
Cpgi14287 4 48617186 to 48617452 266 CpG island CpG island 14287
Tssr37246 4 48618744 to 48618769 25 + TSS region transcription start site region 37246
Tssr37247 4 48618927 to 48618933 6 + TSS region transcription start site region 37247
Tssr37248 4 48636895 to 48636908 13 + TSS region transcription start site region 37248
Tssr37249 4 48662382 to 48662408 26 + TSS region transcription start site region 37249
Tssr37250 4 48663502 to 48663525 23 + TSS region transcription start site region 37250
Cavin4 4 48663514 to 48673492 9978 + protein coding gene caveolae associated 4
Tssr37251 4 48663546 to 48663563 17 + TSS region transcription start site region 37251
Gm12439 4 48675156 to 48675520 364 + pseudogene predicted gene 12439
Gm12438 4 48745515 to 48745850 335 - pseudogene predicted gene 12438
Gm24573 4 48762851 to 48762962 111 - rRNA gene predicted gene, 24573
D4Mit273 4 48782300 to 48782424 124 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 273
Gm23746 4 48896499 to 48896623 124 + snoRNA gene predicted gene, 23746
Tssr37252 4 48898558 to 48898565 7 + TSS region transcription start site region 37252
Gm12436 4 48898593 to 48963237 64644 + lincRNA gene predicted gene 12436
4933437F24Rik 4 48970694 to 48972164 1470 unclassified gene RIKEN cDNA 4933437F24 gene
Gm12442 4 48972978 to 48973315 337 + pseudogene predicted gene 12442
Cpgi14288 4 49058784 to 49060202 1418 CpG island CpG island 14288
Tssr37253 4 49059231 to 49059247 16 + TSS region transcription start site region 37253
Tssr37254 4 49059256 to 49059330 74 + TSS region transcription start site region 37254
Tssr37255 4 49059335 to 49059347 12 + TSS region transcription start site region 37255
Tssr37256 4 49059439 to 49059465 26 + TSS region transcription start site region 37256
Plppr1 4 49059462 to 49340261 280799 + protein coding gene phospholipid phosphatase related 1
Tssr37257 4 49059466 to 49059550 84 + TSS region transcription start site region 37257
Gm32657 4 49227442 to 49244719 17277 - lncRNA gene predicted gene, 32657
Gm22685 4 49289298 to 49289403 105 + snRNA gene predicted gene, 22685
D4Mit112 4 49304001 to 49304124 123 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 112
Gm12453 4 49342248 to 49342578 330 + pseudogene predicted gene 12453
Rbpj-ps1 4 49350522 to 49351527 1005 + pseudogene recombination signal binding protein for immunoglobulin kappa J region, pseudogene 1
Acnat2 4 49379840 to 49408151 28311 - protein coding gene acyl-coenzyme A amino acid N-acyltransferase 2
Tssr41646 4 49383689 to 49383716 27 - TSS region transcription start site region 41646
Tssr41647 4 49383783 to 49383793 10 - TSS region transcription start site region 41647
Gm12451 4 49396112 to 49407732 11620 + pseudogene predicted gene 12451
Tssr41648 4 49408042 to 49408045 3 - TSS region transcription start site region 41648
Gm12452 4 49412307 to 49412637 330 + pseudogene predicted gene 12452
Rbpj-ps2 4 49430226 to 49444084 13858 + pseudogene recombination signal binding protein for immunoglobulin kappa J region, pseudogene 2
Tssr41649 4 49446293 to 49446312 19 - TSS region transcription start site region 41649
Acnat1 4 49447105 to 49473912 26807 - protein coding gene acyl-coenzyme A amino acid N-acyltransferase 1
Tssr41650 4 49447172 to 49447176 4 - TSS region transcription start site region 41650
Tssr41651 4 49451234 to 49451274 40 - TSS region transcription start site region 41651
Tssr41652 4 49473870 to 49473887 17 - TSS region transcription start site region 41652
Tssr41653 4 49473905 to 49473918 13 - TSS region transcription start site region 41653
Gm26424 4 49474307 to 49474410 103 + snRNA gene predicted gene, 26424
Gm33009 4 49474707 to 49487266 12559 + lncRNA gene predicted gene, 33009
9030417H13Rik 4 49478385 to 49481035 2650 unclassified gene RIKEN cDNA 9030417H13 gene
Tssr41654 4 49481034 to 49481044 10 - TSS region transcription start site region 41654
Tssr41655 4 49481098 to 49481108 10 - TSS region transcription start site region 41655
Tssr41656 4 49481117 to 49481128 11 - TSS region transcription start site region 41656
Tssr41657 4 49481168 to 49481182 14 - TSS region transcription start site region 41657
Tssr41658 4 49481197 to 49481208 11 - TSS region transcription start site region 41658
Tssr41659 4 49481273 to 49481309 36 - TSS region transcription start site region 41659
Gm32894 4 49488479 to 49504473 15994 + lncRNA gene predicted gene, 32894
Baat 4 49489422 to 49506557 17135 - protein coding gene bile acid-Coenzyme A: amino acid N-acyltransferase
Tssr41660 4 49506490 to 49506513 23 - TSS region transcription start site region 41660
Tssr41661 4 49506528 to 49506533 5 - TSS region transcription start site region 41661
Tssr41662 4 49506538 to 49506563 25 - TSS region transcription start site region 41662
Mrpl50 4 49512597 to 49521083 8486 - protein coding gene mitochondrial ribosomal protein L50
Cpgi14289 4 49520651 to 49521678 1027 CpG island CpG island 14289
Tssr41663 4 49521036 to 49521089 53 - TSS region transcription start site region 41663
Zfp189 4 49521176 to 49531517 10341 + protein coding gene zinc finger protein 189
Tssr37258 4 49521214 to 49521296 82 + TSS region transcription start site region 37258
1110065F06Rik 4 49532183 to 49533792 1609 unclassified gene RIKEN cDNA 1110065F06 gene
Aldob 4 49535995 to 49549546 13551 - protein coding gene aldolase B, fructose-bisphosphate
Tssr37259 4 49536505 to 49536557 52 + TSS region transcription start site region 37259
Tssr41664 4 49536607 to 49536621 14 - TSS region transcription start site region 41664
Tssr41665 4 49536632 to 49536643 11 - TSS region transcription start site region 41665
Tssr41666 4 49536645 to 49536656 11 - TSS region transcription start site region 41666
Tssr37260 4 49536645 to 49536665 20 + TSS region transcription start site region 37260
Tssr41667 4 49536682 to 49536694 12 - TSS region transcription start site region 41667
Tssr41668 4 49536735 to 49536753 18 - TSS region transcription start site region 41668
Tssr41669 4 49536789 to 49536800 11 - TSS region transcription start site region 41669
Tssr1171 4 49536802 to 49536806 4 - TSS region transcription start site region 1171
Tssr1172 4 49536812 to 49536815 3 - TSS region transcription start site region 1172
Tssr41670 4 49536816 to 49536849 33 - TSS region transcription start site region 41670
Tssr41671 4 49536854 to 49536876 22 - TSS region transcription start site region 41671
Tssr41672 4 49536882 to 49536901 19 - TSS region transcription start site region 41672
Tssr41673 4 49538160 to 49538206 46 - TSS region transcription start site region 41673
Tssr41674 4 49538250 to 49538266 16 - TSS region transcription start site region 41674
Tssr41675 4 49538269 to 49538302 33 - TSS region transcription start site region 41675
Tssr41676 4 49538741 to 49538900 159 - TSS region transcription start site region 41676
Tssr41677 4 49539757 to 49539779 22 - TSS region transcription start site region 41677
Tssr41678 4 49540879 to 49540901 22 - TSS region transcription start site region 41678
Tssr41679 4 49541178 to 49541249 71 - TSS region transcription start site region 41679
Tssr41680 4 49541273 to 49541295 22 - TSS region transcription start site region 41680
Tssr41681 4 49542591 to 49542601 10 - TSS region transcription start site region 41681
Tssr41682 4 49542826 to 49542858 32 - TSS region transcription start site region 41682
Tssr41683 4 49544879 to 49544908 29 - TSS region transcription start site region 41683
Tssr41684 4 49544912 to 49544925 13 - TSS region transcription start site region 41684
Tssr41685 4 49546734 to 49546738 4 - TSS region transcription start site region 41685
Tssr41686 4 49547931 to 49547947 16 - TSS region transcription start site region 41686
Tssr41687 4 49549221 to 49549228 7 - TSS region transcription start site region 41687
Tssr41688 4 49549244 to 49549253 9 - TSS region transcription start site region 41688
Tssr41689 4 49549485 to 49549514 29 - TSS region transcription start site region 41689
Tssr41690 4 49549523 to 49549538 15 - TSS region transcription start site region 41690
Tssr37261 4 49549669 to 49549705 36 + TSS region transcription start site region 37261
D4Mit215 4 49552570 to 49552718 148 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 215
Tssr37262 4 49559979 to 49559983 4 + TSS region transcription start site region 37262
Tmem246 4 49584506 to 49597870 13364 - protein coding gene transmembrane protein 246
Tssr41691 4 49593875 to 49593915 40 - TSS region transcription start site region 41691
Cpgi14290 4 49596860 to 49597884 1024 CpG island CpG island 14290
Tssr41692 4 49597231 to 49597268 37 - TSS region transcription start site region 41692
Tssr41693 4 49597402 to 49597416 14 - TSS region transcription start site region 41693
Tssr41694 4 49597425 to 49597493 68 - TSS region transcription start site region 41694
Tssr41695 4 49597708 to 49597777 69 - TSS region transcription start site region 41695
Tssr41696 4 49597785 to 49597830 45 - TSS region transcription start site region 41696
Tssr41697 4 49597837 to 49597849 12 - TSS region transcription start site region 41697
Tssr41698 4 49597860 to 49597892 32 - TSS region transcription start site region 41698
Gm33106 4 49597989 to 49599772 1783 + lncRNA gene predicted gene, 33106
Gm33159 4 49608027 to 49617796 9769 - lncRNA gene predicted gene, 33159
Gm45952 4 49630658 to 49631946 1288 - lncRNA gene predicted gene, 45952
Cpgi14291 4 49631827 to 49632547 720 CpG island CpG island 14291
Tssr41699 4 49631940 to 49631963 23 - TSS region transcription start site region 41699
Tssr37263 4 49631999 to 49632010 11 + TSS region transcription start site region 37263
Rnf20 4 49632006 to 49656887 24881 + protein coding gene ring finger protein 20
Tssr37264 4 49632046 to 49632110 64 + TSS region transcription start site region 37264
Tssr37265 4 49632134 to 49632139 5 + TSS region transcription start site region 37265
Tssr37266 4 49650092 to 49650110 18 + TSS region transcription start site region 37266
Grin3a 4 49661611 to 49845744 184133 - protein coding gene glutamate receptor ionotropic, NMDA3A
Ppp3r2 4 49678747 to 49681983 3236 - protein coding gene protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II)
Cpgi14292 4 49681631 to 49682028 397 CpG island CpG island 14292
Tssr41700 4 49681956 to 49682038 82 - TSS region transcription start site region 41700
Gm42286 4 49682004 to 49692792 10788 + lncRNA gene predicted gene, 42286
Tssr41701 4 49682377 to 49682385 8 - TSS region transcription start site region 41701