Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:48083646-49093650

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nr4a3 4 48045153 to 48086447 41294 + protein coding gene nuclear receptor subfamily 4, group A, member 3
Tssr37219 4 48083679 to 48083683 4 + TSS region transcription start site region 37219
Tssr37220 4 48083806 to 48083821 15 + TSS region transcription start site region 37220
Tssr37221 4 48084222 to 48084242 20 + TSS region transcription start site region 37221
Tssr37222 4 48085458 to 48085468 10 + TSS region transcription start site region 37222
Tssr37223 4 48085522 to 48085533 11 + TSS region transcription start site region 37223
Tssr37224 4 48085551 to 48085556 5 + TSS region transcription start site region 37224
Cpgi14282 4 48124725 to 48125419 694 CpG island CpG island 14282
Tssr37225 4 48124903 to 48124938 35 + TSS region transcription start site region 37225
Stx17 4 48124915 to 48186507 61592 + protein coding gene syntaxin 17
Tssr37226 4 48124944 to 48124955 11 + TSS region transcription start site region 37226
Erp44 4 48193323 to 48279558 86235 - protein coding gene endoplasmic reticulum protein 44
Mir1958 4 48213119 to 48213215 96 - miRNA gene microRNA 1958
Cpgi14283 4 48279095 to 48280127 1032 CpG island CpG island 14283
Tssr41637 4 48279502 to 48279515 13 - TSS region transcription start site region 41637
Tssr41638 4 48279544 to 48279613 69 - TSS region transcription start site region 41638
Invs 4 48279760 to 48431954 152194 + protein coding gene inversin
Tssr37227 4 48279794 to 48279852 58 + TSS region transcription start site region 37227
Tssr1170 4 48279857 to 48279881 24 + TSS region transcription start site region 1170
Gm12435 4 48344215 to 48345230 1015 - pseudogene predicted gene 12435
C030004N09Rik 4 48427728 to 48429230 1502 unclassified gene RIKEN cDNA C030004N09 gene
Tex10 4 48430858 to 48473459 42601 - protein coding gene testis expressed gene 10
Tssr41639 4 48435004 to 48435017 13 - TSS region transcription start site region 41639
Tssr41640 4 48435099 to 48435108 9 - TSS region transcription start site region 41640
Tssr41641 4 48442128 to 48442131 3 - TSS region transcription start site region 41641
Tssr41642 4 48468791 to 48468819 28 - TSS region transcription start site region 41642
Cpgi14284 4 48472788 to 48473684 896 CpG island CpG island 14284
Tssr41643 4 48473339 to 48473356 17 - TSS region transcription start site region 41643
Tssr41644 4 48473382 to 48473401 19 - TSS region transcription start site region 41644
Tssr41645 4 48473403 to 48473457 54 - TSS region transcription start site region 41645
Cpgi14285 4 48539838 to 48541148 1310 CpG island CpG island 14285
Tssr37228 4 48539909 to 48539924 15 + TSS region transcription start site region 37228
Msantd3 4 48539935 to 48561919 21984 + protein coding gene Myb/SANT-like DNA-binding domain containing 3
Tssr37229 4 48540067 to 48540086 19 + TSS region transcription start site region 37229
Tssr37230 4 48540118 to 48540138 20 + TSS region transcription start site region 37230
Tssr37231 4 48540152 to 48540167 15 + TSS region transcription start site region 37231
Tssr37232 4 48540347 to 48540368 21 + TSS region transcription start site region 37232
Tssr37233 4 48540381 to 48540411 30 + TSS region transcription start site region 37233
Tssr37234 4 48540419 to 48540502 83 + TSS region transcription start site region 37234
Cpgi14286 4 48584497 to 48586266 1769 CpG island CpG island 14286
Tssr37235 4 48585081 to 48585134 53 + TSS region transcription start site region 37235
Tssr37236 4 48585135 to 48585187 52 + TSS region transcription start site region 37236
Tmeff1 4 48585174 to 48663131 77957 + protein coding gene transmembrane protein with EGF-like and two follistatin-like domains 1
Tssr37237 4 48585198 to 48585215 17 + TSS region transcription start site region 37237
Tssr37238 4 48585227 to 48585245 18 + TSS region transcription start site region 37238
Tssr37239 4 48585248 to 48585268 20 + TSS region transcription start site region 37239
Tssr37240 4 48585276 to 48585328 52 + TSS region transcription start site region 37240
Tssr37241 4 48586991 to 48587000 9 + TSS region transcription start site region 37241
Tssr37242 4 48588646 to 48588650 4 + TSS region transcription start site region 37242
Tssr37243 4 48610441 to 48610448 7 + TSS region transcription start site region 37243
Tssr37244 4 48610488 to 48610507 19 + TSS region transcription start site region 37244
Tssr37245 4 48615530 to 48615535 5 + TSS region transcription start site region 37245
Cpgi14287 4 48617186 to 48617452 266 CpG island CpG island 14287
Tssr37246 4 48618744 to 48618769 25 + TSS region transcription start site region 37246
Tssr37247 4 48618927 to 48618933 6 + TSS region transcription start site region 37247
Tssr37248 4 48636895 to 48636908 13 + TSS region transcription start site region 37248
Tssr37249 4 48662382 to 48662408 26 + TSS region transcription start site region 37249
Tssr37250 4 48663502 to 48663525 23 + TSS region transcription start site region 37250
Cavin4 4 48663514 to 48673492 9978 + protein coding gene caveolae associated 4
Tssr37251 4 48663546 to 48663563 17 + TSS region transcription start site region 37251
Gm12439 4 48675156 to 48675520 364 + pseudogene predicted gene 12439
Gm12438 4 48745515 to 48745850 335 - pseudogene predicted gene 12438
Gm24573 4 48762851 to 48762962 111 - rRNA gene predicted gene, 24573
D4Mit273 4 48782300 to 48782424 124 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 273
Gm23746 4 48896499 to 48896623 124 + snoRNA gene predicted gene, 23746
Tssr37252 4 48898558 to 48898565 7 + TSS region transcription start site region 37252
Gm12436 4 48898593 to 48963237 64644 + lincRNA gene predicted gene 12436
4933437F24Rik 4 48970694 to 48972164 1470 unclassified gene RIKEN cDNA 4933437F24 gene
Gm12442 4 48972978 to 48973315 337 + pseudogene predicted gene 12442
Cpgi14288 4 49058784 to 49060202 1418 CpG island CpG island 14288
Tssr37253 4 49059231 to 49059247 16 + TSS region transcription start site region 37253
Tssr37254 4 49059256 to 49059330 74 + TSS region transcription start site region 37254
Tssr37255 4 49059335 to 49059347 12 + TSS region transcription start site region 37255
Tssr37256 4 49059439 to 49059465 26 + TSS region transcription start site region 37256
Plppr1 4 49059462 to 49340261 280799 + protein coding gene phospholipid phosphatase related 1
Tssr37257 4 49059466 to 49059550 84 + TSS region transcription start site region 37257