Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:47165257-48036049

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm12423 4 47171669 to 47171803 134 + pseudogene predicted gene 12423
D4Mit229 4 47180913 to 47181039 126 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 229
Gm12426 4 47199114 to 47209308 10194 - antisense lncRNA gene predicted gene 12426
Cpgi14272 4 47207499 to 47209006 1507 CpG island CpG island 14272
Tssr37149 4 47207581 to 47207595 14 + TSS region transcription start site region 37149
Tssr37150 4 47208005 to 47208088 83 + TSS region transcription start site region 37150
Col15a1 4 47208161 to 47313167 105006 + protein coding gene collagen, type XV, alpha 1
Tssr37151 4 47208237 to 47208252 15 + TSS region transcription start site region 37151
Tssr37152 4 47208265 to 47208276 11 + TSS region transcription start site region 37152
Tssr37153 4 47208280 to 47208292 12 + TSS region transcription start site region 37153
Tssr37154 4 47208298 to 47208316 18 + TSS region transcription start site region 37154
Gm32317 4 47225158 to 47245344 20186 - lncRNA gene predicted gene, 32317
Tssr37155 4 47242395 to 47242404 9 + TSS region transcription start site region 37155
Cpgi14273 4 47245503 to 47245825 322 CpG island CpG island 14273
Tssr37156 4 47259701 to 47259717 16 + TSS region transcription start site region 37156
Tssr1169 4 47284270 to 47284316 46 + TSS region transcription start site region 1169
Tssr37157 4 47285960 to 47285966 6 + TSS region transcription start site region 37157
Tssr37158 4 47287828 to 47287835 7 + TSS region transcription start site region 37158
Tssr37159 4 47288062 to 47288076 14 + TSS region transcription start site region 37159
Tssr37160 4 47288434 to 47288455 21 + TSS region transcription start site region 37160
Tssr41619 4 47302511 to 47302520 9 - TSS region transcription start site region 41619
Tssr41620 4 47302550 to 47302563 13 - TSS region transcription start site region 41620
Tssr37161 4 47306053 to 47306081 28 + TSS region transcription start site region 37161
Tssr37162 4 47312195 to 47312226 31 + TSS region transcription start site region 37162
Gm42282 4 47334016 to 47346595 12579 - lncRNA gene predicted gene, 42282
Tssr41621 4 47346570 to 47346616 46 - TSS region transcription start site region 41621
Cpgi14274 4 47352300 to 47354003 1703 CpG island CpG island 14274
Tssr37163 4 47353219 to 47353224 5 + TSS region transcription start site region 37163
Tgfbr1 4 47353222 to 47414926 61704 + protein coding gene transforming growth factor, beta receptor I
Tssr37164 4 47353231 to 47353265 34 + TSS region transcription start site region 37164
Tssr37165 4 47353283 to 47353304 21 + TSS region transcription start site region 37165
Gm32435 4 47353863 to 47386136 32273 - lncRNA gene predicted gene, 32435
Tssr37166 4 47367247 to 47367273 26 + TSS region transcription start site region 37166
Tssr37167 4 47386234 to 47386265 31 + TSS region transcription start site region 37167
Tssr37168 4 47387154 to 47387158 4 + TSS region transcription start site region 37168
Tssr37169 4 47409822 to 47409826 4 + TSS region transcription start site region 37169
Tssr37170 4 47412764 to 47412800 36 + TSS region transcription start site region 37170
Tssr37171 4 47413790 to 47413803 13 + TSS region transcription start site region 37171
Cpgi14275 4 47437596 to 47438271 675 CpG island CpG island 14275
Gm12430 4 47453632 to 47454953 1321 + pseudogene predicted gene 12430
Alg2 4 47469833 to 47474370 4537 - protein coding gene asparagine-linked glycosylation 2 (alpha-1,3-mannosyltransferase)
Cpgi14276 4 47473931 to 47475150 1219 CpG island CpG island 14276
Tssr41622 4 47474187 to 47474194 7 - TSS region transcription start site region 41622
Tssr41623 4 47474283 to 47474349 66 - TSS region transcription start site region 41623
Tssr37172 4 47474652 to 47474707 55 + TSS region transcription start site region 37172
Sec61b 4 47474661 to 47483233 8572 + protein coding gene Sec61 beta subunit
Tssr37173 4 47474715 to 47474726 11 + TSS region transcription start site region 37173
Tssr37174 4 47480034 to 47480040 6 + TSS region transcription start site region 37174
D4Mit271 4 47488954 to 47489076 122 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 271
Gm42283 4 47489242 to 47494855 5613 - lncRNA gene predicted gene, 42283
Gm27601 4 47593337 to 47593463 126 + unclassified non-coding RNA gene predicted gene, 27601
Gm42284 4 47595257 to 47606049 10792 - lncRNA gene predicted gene, 42284
Gm32487 4 47603417 to 47608287 4870 + lncRNA gene predicted gene, 32487
Gm27668 4 47603889 to 47604008 119 + unclassified non-coding RNA gene predicted gene, 27668
Gm32544 4 47626015 to 47638877 12862 - lncRNA gene predicted gene, 32544
Gm38343 4 47827224 to 47927365 100141 - unclassified gene predicted gene, 38343
Gm46883 4 47899768 to 47913133 13365 + lncRNA gene predicted gene, 46883
Gm22670 4 47920755 to 47920897 142 + snoRNA gene predicted gene, 22670
Tssr37175 4 47943750 to 47943756 6 + TSS region transcription start site region 37175
Gm46853 4 47946179 to 47951577 5398 - lncRNA gene predicted gene, 46853
Tssr37176 4 47996411 to 47996441 30 + TSS region transcription start site region 37176
Tssr37177 4 47996448 to 47996461 13 + TSS region transcription start site region 37177
Gm12434 4 47996456 to 47998261 1805 + lincRNA gene predicted gene 12434
Tssr37178 4 47996463 to 47996470 7 + TSS region transcription start site region 37178
Tssr41624 4 48034455 to 48034498 43 - TSS region transcription start site region 41624