Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:46487635-46837652

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi14258 4 46489055 to 46489823 768 CpG island CpG island 14258
Tssr37136 4 46489274 to 46489356 82 + TSS region transcription start site region 37136
Nans 4 46489329 to 46503438 14109 + protein coding gene N-acetylneuraminic acid synthase (sialic acid synthase)
Tssr37137 4 46489375 to 46489382 7 + TSS region transcription start site region 37137
Gm22247 4 46495155 to 46495285 130 + snoRNA gene predicted gene, 22247
Tssr41583 4 46503458 to 46503462 4 - TSS region transcription start site region 41583
Trim14 4 46505072 to 46536154 31082 - protein coding gene tripartite motif-containing 14
Cpgi14259 4 46506622 to 46507662 1040 CpG island CpG island 14259
Tssr41584 4 46506829 to 46506843 14 - TSS region transcription start site region 41584
Tssr37138 4 46508395 to 46508397 2 + TSS region transcription start site region 37138
Tssr41585 4 46509304 to 46509324 20 - TSS region transcription start site region 41585
Tssr41586 4 46528371 to 46528384 13 - TSS region transcription start site region 41586
Cpgi14260 4 46534157 to 46534874 717 CpG island CpG island 14260
Tssr41587 4 46534582 to 46534615 33 - TSS region transcription start site region 41587
Cpgi14261 4 46535554 to 46536424 870 CpG island CpG island 14261
Tssr41588 4 46536096 to 46536130 34 - TSS region transcription start site region 41588
Tssr41589 4 46536134 to 46536143 9 - TSS region transcription start site region 41589
Coro2a 4 46536937 to 46601929 64992 - protein coding gene coronin, actin binding protein 2A
Tssr41590 4 46537590 to 46537593 3 - TSS region transcription start site region 41590
Tssr41591 4 46538389 to 46538408 19 - TSS region transcription start site region 41591
Tssr37139 4 46538866 to 46538867 1 + TSS region transcription start site region 37139
Gm16731 4 46539092 to 46539883 791 + lncRNA gene predicted gene, 16731
Tssr41592 4 46549253 to 46549266 13 - TSS region transcription start site region 41592
Tssr1166 4 46562958 to 46562968 10 - TSS region transcription start site region 1166
Tssr41593 4 46566432 to 46566471 39 - TSS region transcription start site region 41593
Tssr41594 4 46566484 to 46566489 5 - TSS region transcription start site region 41594
4930566K23Rik 4 46567136 to 46567914 778 unclassified gene RIKEN cDNA 4930566K23 gene
Tssr37140 4 46576800 to 46576803 3 + TSS region transcription start site region 37140
BC005685 4 46577209 to 46578785 1576 protein coding gene cDNA sequence BC005685
Tssr41595 4 46591863 to 46591867 4 - TSS region transcription start site region 41595
D4Mit162.1 4 46599181 to 46599300 119 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 162.1
D4Mit162 4 46599267 to 46599403 136 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 162
D4Mit162.2 4 46599359 to 46599470 111 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 162.2
Cpgi14262 4 46601086 to 46602357 1271 CpG island CpG island 14262
Tssr37141 4 46601341 to 46601374 33 + TSS region transcription start site region 37141
Tssr41596 4 46601871 to 46601911 40 - TSS region transcription start site region 41596
Tssr1167 4 46601925 to 46601944 19 - TSS region transcription start site region 1167
Tssr37142 4 46602026 to 46602035 9 + TSS region transcription start site region 37142
Tssr41597 4 46602193 to 46602224 31 - TSS region transcription start site region 41597
Tbc1d2 4 46604390 to 46650209 45819 - protein coding gene TBC1 domain family, member 2
Gm31850 4 46607149 to 46610128 2979 + lncRNA gene predicted gene, 31850
Cpgi14263 4 46614859 to 46615068 209 CpG island CpG island 14263
Cpgi14264 4 46620312 to 46620802 490 CpG island CpG island 14264
Gm42281 4 46621599 to 46628333 6734 + lncRNA gene predicted gene, 42281
Tssr41598 4 46630067 to 46630078 11 - TSS region transcription start site region 41598
D4Mit53 4 46642108 to 46642298 190 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 53
Tssr41599 4 46648780 to 46648792 12 - TSS region transcription start site region 41599
Cpgi14265 4 46649659 to 46650943 1284 CpG island CpG island 14265
Tssr41600 4 46650049 to 46650078 29 - TSS region transcription start site region 41600
Tssr41601 4 46650085 to 46650100 15 - TSS region transcription start site region 41601
Tssr41602 4 46650102 to 46650125 23 - TSS region transcription start site region 41602
Tssr41603 4 46650157 to 46650234 77 - TSS region transcription start site region 41603
Tssr37143 4 46650271 to 46650317 46 + TSS region transcription start site region 37143
Tssr41604 4 46662635 to 46662652 17 - TSS region transcription start site region 41604
Gabbr2 4 46663898 to 46991714 327816 - protein coding gene gamma-aminobutyric acid (GABA) B receptor, 2
Cpgi14266 4 46664547 to 46664974 427 CpG island CpG island 14266
Tssr37144 4 46668882 to 46668886 4 + TSS region transcription start site region 37144
Tssr41605 4 46677630 to 46677642 12 - TSS region transcription start site region 41605
Tssr41606 4 46749026 to 46749030 4 - TSS region transcription start site region 41606
Tssr1168 4 46752579 to 46752606 27 + TSS region transcription start site region 1168
Tssr37145 4 46787603 to 46787624 21 + TSS region transcription start site region 37145
Sluc43 4 123233418 to 46642108 -76591310 QTL susceptibility to lung cancer 43