Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:46476678-47506714

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141 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D4Mit38 4 46479238 to 46479441 203 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 38
Cpgi14258 4 46489055 to 46489823 768 CpG island CpG island 14258
Tssr37136 4 46489274 to 46489356 82 + TSS region transcription start site region 37136
Nans 4 46489329 to 46503438 14109 + protein coding gene N-acetylneuraminic acid synthase (sialic acid synthase)
Tssr37137 4 46489375 to 46489382 7 + TSS region transcription start site region 37137
Gm22247 4 46495155 to 46495285 130 + snoRNA gene predicted gene, 22247
Tssr41583 4 46503458 to 46503462 4 - TSS region transcription start site region 41583
Trim14 4 46505072 to 46536154 31082 - protein coding gene tripartite motif-containing 14
Cpgi14259 4 46506622 to 46507662 1040 CpG island CpG island 14259
Tssr41584 4 46506829 to 46506843 14 - TSS region transcription start site region 41584
Tssr37138 4 46508395 to 46508397 2 + TSS region transcription start site region 37138
Tssr41585 4 46509304 to 46509324 20 - TSS region transcription start site region 41585
Tssr41586 4 46528371 to 46528384 13 - TSS region transcription start site region 41586
Cpgi14260 4 46534157 to 46534874 717 CpG island CpG island 14260
Tssr41587 4 46534582 to 46534615 33 - TSS region transcription start site region 41587
Cpgi14261 4 46535554 to 46536424 870 CpG island CpG island 14261
Tssr41588 4 46536096 to 46536130 34 - TSS region transcription start site region 41588
Tssr41589 4 46536134 to 46536143 9 - TSS region transcription start site region 41589
Coro2a 4 46536937 to 46601929 64992 - protein coding gene coronin, actin binding protein 2A
Tssr41590 4 46537590 to 46537593 3 - TSS region transcription start site region 41590
Tssr41591 4 46538389 to 46538408 19 - TSS region transcription start site region 41591
Tssr37139 4 46538866 to 46538867 1 + TSS region transcription start site region 37139
Gm16731 4 46539092 to 46539883 791 + lncRNA gene predicted gene, 16731
Tssr41592 4 46549253 to 46549266 13 - TSS region transcription start site region 41592
Tssr1166 4 46562958 to 46562968 10 - TSS region transcription start site region 1166
Tssr41593 4 46566432 to 46566471 39 - TSS region transcription start site region 41593
Tssr41594 4 46566484 to 46566489 5 - TSS region transcription start site region 41594
4930566K23Rik 4 46567136 to 46567914 778 unclassified gene RIKEN cDNA 4930566K23 gene
Tssr37140 4 46576800 to 46576803 3 + TSS region transcription start site region 37140
BC005685 4 46577209 to 46578785 1576 protein coding gene cDNA sequence BC005685
Tssr41595 4 46591863 to 46591867 4 - TSS region transcription start site region 41595
D4Mit162.1 4 46599181 to 46599300 119 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 162.1
D4Mit162 4 46599267 to 46599403 136 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 162
D4Mit162.2 4 46599359 to 46599470 111 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 162.2
Cpgi14262 4 46601086 to 46602357 1271 CpG island CpG island 14262
Tssr37141 4 46601341 to 46601374 33 + TSS region transcription start site region 37141
Tssr41596 4 46601871 to 46601911 40 - TSS region transcription start site region 41596
Tssr1167 4 46601925 to 46601944 19 - TSS region transcription start site region 1167
Tssr37142 4 46602026 to 46602035 9 + TSS region transcription start site region 37142
Tssr41597 4 46602193 to 46602224 31 - TSS region transcription start site region 41597
Tbc1d2 4 46604390 to 46650209 45819 - protein coding gene TBC1 domain family, member 2
Gm31850 4 46607149 to 46610128 2979 + lncRNA gene predicted gene, 31850
Cpgi14263 4 46614859 to 46615068 209 CpG island CpG island 14263
Cpgi14264 4 46620312 to 46620802 490 CpG island CpG island 14264
Gm42281 4 46621599 to 46628333 6734 + lncRNA gene predicted gene, 42281
Tssr41598 4 46630067 to 46630078 11 - TSS region transcription start site region 41598
D4Mit53 4 46642108 to 46642298 190 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 53
Tssr41599 4 46648780 to 46648792 12 - TSS region transcription start site region 41599
Cpgi14265 4 46649659 to 46650943 1284 CpG island CpG island 14265
Tssr41600 4 46650049 to 46650078 29 - TSS region transcription start site region 41600
Tssr41601 4 46650085 to 46650100 15 - TSS region transcription start site region 41601
Tssr41602 4 46650102 to 46650125 23 - TSS region transcription start site region 41602
Tssr41603 4 46650157 to 46650234 77 - TSS region transcription start site region 41603
Tssr37143 4 46650271 to 46650317 46 + TSS region transcription start site region 37143
Tssr41604 4 46662635 to 46662652 17 - TSS region transcription start site region 41604
Gabbr2 4 46663898 to 46991714 327816 - protein coding gene gamma-aminobutyric acid (GABA) B receptor, 2
Cpgi14266 4 46664547 to 46664974 427 CpG island CpG island 14266
Tssr37144 4 46668882 to 46668886 4 + TSS region transcription start site region 37144
Tssr41605 4 46677630 to 46677642 12 - TSS region transcription start site region 41605
Tssr41606 4 46749026 to 46749030 4 - TSS region transcription start site region 41606
Tssr1168 4 46752579 to 46752606 27 + TSS region transcription start site region 1168
Tssr37145 4 46787603 to 46787624 21 + TSS region transcription start site region 37145
Cpgi14267 4 46846136 to 46846439 303 CpG island CpG island 14267
Tssr37146 4 46854270 to 46854292 22 + TSS region transcription start site region 37146
Gm32208 4 46860170 to 46877704 17534 + lncRNA gene predicted gene, 32208
Gm32135 4 46884066 to 46897624 13558 + lncRNA gene predicted gene, 32135
Tssr41607 4 46941184 to 46941201 17 - TSS region transcription start site region 41607
Cpgi14268 4 46989984 to 46992460 2476 CpG island CpG island 14268
Tssr41608 4 46991516 to 46991527 11 - TSS region transcription start site region 41608
Tssr41609 4 46991536 to 46991650 114 - TSS region transcription start site region 41609
Tssr41610 4 46991678 to 46991714 36 - TSS region transcription start site region 41610
Tssr41611 4 46991761 to 46991782 21 - TSS region transcription start site region 41611
Tssr41612 4 46991822 to 46991831 9 - TSS region transcription start site region 41612
Tssr41613 4 46991842 to 46991916 74 - TSS region transcription start site region 41613
Tssr41614 4 46992038 to 46992042 4 - TSS region transcription start site region 41614
Gm568 4 47008316 to 47010781 2465 - lincRNA gene predicted gene 568
Tssr41615 4 47010797 to 47010807 10 - TSS region transcription start site region 41615
Tssr41616 4 47011126 to 47011139 13 - TSS region transcription start site region 41616
Tssr37147 4 47011238 to 47011268 30 + TSS region transcription start site region 37147
Anks6 4 47015669 to 47057427 41758 - protein coding gene ankyrin repeat and sterile alpha motif domain containing 6
Gm12425 4 47041598 to 47041960 362 + pseudogene predicted gene 12425
Cpgi14269 4 47056584 to 47057733 1149 CpG island CpG island 14269
Tssr41617 4 47057015 to 47057018 3 - TSS region transcription start site region 41617
Tssr41618 4 47057296 to 47057356 60 - TSS region transcription start site region 41618
Gm12422 4 47071646 to 47071947 301 - pseudogene predicted gene 12422
Cpgi14270 4 47091617 to 47092847 1230 CpG island CpG island 14270
Galnt12 4 47091909 to 47123042 31133 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 12
Tssr37148 4 47091913 to 47091969 56 + TSS region transcription start site region 37148
Gm12424 4 47101032 to 47101478 446 + pseudogene predicted gene 12424
Cpgi14271 4 47111396 to 47111726 330 CpG island CpG island 14271
Gm12423 4 47171669 to 47171803 134 + pseudogene predicted gene 12423
D4Mit229 4 47180913 to 47181039 126 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 229
Gm12426 4 47199114 to 47209308 10194 - antisense lncRNA gene predicted gene 12426
Cpgi14272 4 47207499 to 47209006 1507 CpG island CpG island 14272
Tssr37149 4 47207581 to 47207595 14 + TSS region transcription start site region 37149
Tssr37150 4 47208005 to 47208088 83 + TSS region transcription start site region 37150
Col15a1 4 47208161 to 47313167 105006 + protein coding gene collagen, type XV, alpha 1
Tssr37151 4 47208237 to 47208252 15 + TSS region transcription start site region 37151
Tssr37152 4 47208265 to 47208276 11 + TSS region transcription start site region 37152
Tssr37153 4 47208280 to 47208292 12 + TSS region transcription start site region 37153
Tssr37154 4 47208298 to 47208316 18 + TSS region transcription start site region 37154
Gm32317 4 47225158 to 47245344 20186 - lncRNA gene predicted gene, 32317
Tssr37155 4 47242395 to 47242404 9 + TSS region transcription start site region 37155
Cpgi14273 4 47245503 to 47245825 322 CpG island CpG island 14273
Tssr37156 4 47259701 to 47259717 16 + TSS region transcription start site region 37156
Tssr1169 4 47284270 to 47284316 46 + TSS region transcription start site region 1169
Tssr37157 4 47285960 to 47285966 6 + TSS region transcription start site region 37157
Tssr37158 4 47287828 to 47287835 7 + TSS region transcription start site region 37158
Tssr37159 4 47288062 to 47288076 14 + TSS region transcription start site region 37159
Tssr37160 4 47288434 to 47288455 21 + TSS region transcription start site region 37160
Tssr41619 4 47302511 to 47302520 9 - TSS region transcription start site region 41619
Tssr41620 4 47302550 to 47302563 13 - TSS region transcription start site region 41620
Tssr37161 4 47306053 to 47306081 28 + TSS region transcription start site region 37161
Tssr37162 4 47312195 to 47312226 31 + TSS region transcription start site region 37162
Gm42282 4 47334016 to 47346595 12579 - lncRNA gene predicted gene, 42282
Tssr41621 4 47346570 to 47346616 46 - TSS region transcription start site region 41621
Cpgi14274 4 47352300 to 47354003 1703 CpG island CpG island 14274
Tssr37163 4 47353219 to 47353224 5 + TSS region transcription start site region 37163
Tgfbr1 4 47353222 to 47414926 61704 + protein coding gene transforming growth factor, beta receptor I
Tssr37164 4 47353231 to 47353265 34 + TSS region transcription start site region 37164
Tssr37165 4 47353283 to 47353304 21 + TSS region transcription start site region 37165
Gm32435 4 47353863 to 47386136 32273 - lncRNA gene predicted gene, 32435
Tssr37166 4 47367247 to 47367273 26 + TSS region transcription start site region 37166
Tssr37167 4 47386234 to 47386265 31 + TSS region transcription start site region 37167
Tssr37168 4 47387154 to 47387158 4 + TSS region transcription start site region 37168
Tssr37169 4 47409822 to 47409826 4 + TSS region transcription start site region 37169
Tssr37170 4 47412764 to 47412800 36 + TSS region transcription start site region 37170
Tssr37171 4 47413790 to 47413803 13 + TSS region transcription start site region 37171
Cpgi14275 4 47437596 to 47438271 675 CpG island CpG island 14275
Gm12430 4 47453632 to 47454953 1321 + pseudogene predicted gene 12430
Alg2 4 47469833 to 47474370 4537 - protein coding gene asparagine-linked glycosylation 2 (alpha-1,3-mannosyltransferase)
Cpgi14276 4 47473931 to 47475150 1219 CpG island CpG island 14276
Tssr41622 4 47474187 to 47474194 7 - TSS region transcription start site region 41622
Tssr41623 4 47474283 to 47474349 66 - TSS region transcription start site region 41623
Tssr37172 4 47474652 to 47474707 55 + TSS region transcription start site region 37172
Sec61b 4 47474661 to 47483233 8572 + protein coding gene Sec61 beta subunit
Tssr37173 4 47474715 to 47474726 11 + TSS region transcription start site region 37173
Tssr37174 4 47480034 to 47480040 6 + TSS region transcription start site region 37174
D4Mit271 4 47488954 to 47489076 122 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 271
Gm42283 4 47489242 to 47494855 5613 - lncRNA gene predicted gene, 42283
Sluc43 4 123233418 to 46642108 -76591310 QTL susceptibility to lung cancer 43