Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:46180007-46465515

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aaom1 4 24322299 to 46332776 22010477 QTL autoimmune aoritis in MRL mice 1
Ssrq9 4 34395160 to 46332776 11937616 QTL stress response QTL 9
Xpa 4 46174735 to 46196353 21618 - protein coding gene xeroderma pigmentosum, complementation group A
Tssr41560 4 46184312 to 46184318 6 - TSS region transcription start site region 41560
Tssr41561 4 46194325 to 46194328 3 - TSS region transcription start site region 41561
Cpgi14247 4 46195773 to 46196693 920 CpG island CpG island 14247
Tssr41562 4 46196273 to 46196284 11 - TSS region transcription start site region 41562
Tssr41563 4 46196298 to 46196332 34 - TSS region transcription start site region 41563
Gm31617 4 46202444 to 46207252 4808 + lncRNA gene predicted gene, 31617
Cpgi14248 4 46202649 to 46203074 425 CpG island CpG island 14248
Gm12444 4 46243014 to 46243890 876 - pseudogene predicted gene 12444
Gm12445 4 46273819 to 46274840 1021 - pseudogene predicted gene 12445
Gm12446 4 46300007 to 46345515 45508 - antisense lncRNA gene predicted gene 12446
Cpgi14249 4 46304197 to 46304377 180 CpG island CpG island 14249
Cpgi14250 4 46304798 to 46305785 987 CpG island CpG island 14250
Gm12447 4 46327296 to 46327765 469 + pseudogene predicted gene 12447
Gm42280 4 46327900 to 46330655 2755 + lncRNA gene predicted gene, 42280
D4Mit89 4 46332646 to 46332776 130 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 89
Agnm1 4 46332646 to 55755867 9423221 QTL autoimmune glomerulonephritis in MRL 1
Arvm1 4 46332646 to 46332776 130 QTL autoimmune renal vasculitis 1
Cpgi14251 4 46339571 to 46339964 393 CpG island CpG island 14251
Cpgi14252 4 46342454 to 46345747 3293 CpG island CpG island 14252
Tssr37116 4 46343637 to 46343655 18 + TSS region transcription start site region 37116
Foxe1 4 46344194 to 46345309 1115 + protein coding gene forkhead box E1
Cpgi14253 4 46348051 to 46348446 395 CpG island CpG island 14253
Cpgi14254 4 46371127 to 46371396 269 CpG island CpG island 14254
Tssr37117 4 46371151 to 46371161 10 + TSS region transcription start site region 37117
Cpgi14255 4 46374924 to 46375200 276 CpG island CpG island 14255
Trmo 4 46376505 to 46389437 12932 - protein coding gene tRNA methyltransferase O
Cpgi14256 4 46388995 to 46389871 876 CpG island CpG island 14256
Tssr41564 4 46389103 to 46389123 20 - TSS region transcription start site region 41564
Tssr41565 4 46389391 to 46389456 65 - TSS region transcription start site region 41565
Tssr37118 4 46389461 to 46389501 40 + TSS region transcription start site region 37118
Hemgn 4 46393989 to 46404183 10194 - protein coding gene hemogen
Tssr41566 4 46396861 to 46396873 12 - TSS region transcription start site region 41566
Tssr1165 4 46403950 to 46403955 5 - TSS region transcription start site region 1165
Tssr41567 4 46404012 to 46404023 11 - TSS region transcription start site region 41567
Tssr41568 4 46404027 to 46404036 9 - TSS region transcription start site region 41568
Tssr41569 4 46404041 to 46404058 17 - TSS region transcription start site region 41569
Tssr41570 4 46404068 to 46404094 26 - TSS region transcription start site region 41570
Tssr41571 4 46404125 to 46404140 15 - TSS region transcription start site region 41571
Tssr41572 4 46404149 to 46404160 11 - TSS region transcription start site region 41572
Tssr41573 4 46404224 to 46404240 16 - TSS region transcription start site region 41573
Tssr41574 4 46404330 to 46404339 9 - TSS region transcription start site region 41574
Tssr41575 4 46413469 to 46413483 14 - TSS region transcription start site region 41575
Tssr41576 4 46413486 to 46413489 3 - TSS region transcription start site region 41576
Gm12443 4 46419980 to 46420302 322 - pseudogene predicted gene 12443
Cpgi14257 4 46450454 to 46452848 2394 CpG island CpG island 14257
Tssr37119 4 46450871 to 46450887 16 + TSS region transcription start site region 37119
Tssr37120 4 46450892 to 46450903 11 + TSS region transcription start site region 37120
Tssr37121 4 46450912 to 46450994 82 + TSS region transcription start site region 37121
Tssr37122 4 46451044 to 46451051 7 + TSS region transcription start site region 37122
Tssr37123 4 46451080 to 46451111 31 + TSS region transcription start site region 37123
Anp32b 4 46451117 to 46472532 21415 + protein coding gene acidic (leucine-rich) nuclear phosphoprotein 32 family, member B
Tssr37124 4 46451118 to 46451126 8 + TSS region transcription start site region 37124
Tssr37125 4 46451146 to 46451157 11 + TSS region transcription start site region 37125
Tssr41577 4 46451465 to 46451486 21 - TSS region transcription start site region 41577
Tssr37126 4 46452160 to 46452224 64 + TSS region transcription start site region 37126
Tssr41578 4 46452572 to 46452615 43 - TSS region transcription start site region 41578
Tssr37127 4 46454795 to 46454802 7 + TSS region transcription start site region 37127
Tssr37128 4 46463852 to 46463893 41 + TSS region transcription start site region 37128
Pabr2 4 105944663 to 46332646 -59612017 QTL plasma apolipoprotein B (human) regulator 2