Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:45872550-48732563

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400 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aaom1 4 24322299 to 46332776 22010477 QTL autoimmune aoritis in MRL mice 1
Ssrq9 4 34395160 to 46332776 11937616 QTL stress response QTL 9
Stra6l 4 45848664 to 45887008 38344 + protein coding gene STRA6-like
Ccdc180 4 45890303 to 45950774 60471 + protein coding gene coiled-coil domain containing 180
Tssr37080 4 45890307 to 45890340 33 + TSS region transcription start site region 37080
Tssr37081 4 45890358 to 45890364 6 + TSS region transcription start site region 37081
Tssr37082 4 45932635 to 45932668 33 + TSS region transcription start site region 37082
Tssr37083 4 45949389 to 45949440 51 + TSS region transcription start site region 37083
Cpgi14243 4 45953419 to 45953766 347 CpG island CpG island 14243
Tssr37084 4 45965327 to 45965342 15 + TSS region transcription start site region 37084
Tdrd7 4 45965334 to 46034761 69427 + protein coding gene tudor domain containing 7
Cpgi14244 4 45971984 to 45973003 1019 CpG island CpG island 14244
Tssr1164 4 45972144 to 45972174 30 + TSS region transcription start site region 1164
Tssr37085 4 45972235 to 45972245 10 + TSS region transcription start site region 37085
Tssr37086 4 45972288 to 45972325 37 + TSS region transcription start site region 37086
Tssr37087 4 45972337 to 45972365 28 + TSS region transcription start site region 37087
Tssr37088 4 45972375 to 45972386 11 + TSS region transcription start site region 37088
Tssr37089 4 45972394 to 45972405 11 + TSS region transcription start site region 37089
Tssr37090 4 45972673 to 45972697 24 + TSS region transcription start site region 37090
Tssr37091 4 45972766 to 45972787 21 + TSS region transcription start site region 37091
Tssr37092 4 45972792 to 45972810 18 + TSS region transcription start site region 37092
Tssr37093 4 45998955 to 45998966 11 + TSS region transcription start site region 37093
Tssr37094 4 45998989 to 45998998 9 + TSS region transcription start site region 37094
Tssr37095 4 46000448 to 46000474 26 + TSS region transcription start site region 37095
Tssr37096 4 46031378 to 46031381 3 + TSS region transcription start site region 37096
Cpgi14245 4 46038769 to 46039951 1182 CpG island CpG island 14245
Tmod1 4 46038940 to 46116032 77092 + protein coding gene tropomodulin 1
Tssr37097 4 46039202 to 46039213 11 + TSS region transcription start site region 37097
Tssr37098 4 46039217 to 46039280 63 + TSS region transcription start site region 37098
Tssr37099 4 46040977 to 46040981 4 + TSS region transcription start site region 37099
D4Mit270 4 46055896 to 46056006 110 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 270
Tssr37100 4 46077152 to 46077168 16 + TSS region transcription start site region 37100
Tssr37101 4 46077172 to 46077177 5 + TSS region transcription start site region 37101
Tssr37102 4 46077183 to 46077191 8 + TSS region transcription start site region 37102
Tssr37103 4 46078947 to 46078952 5 + TSS region transcription start site region 37103
Tssr37104 4 46082176 to 46082188 12 + TSS region transcription start site region 37104
Tssr37105 4 46082870 to 46082891 21 + TSS region transcription start site region 37105
Tssr37106 4 46097031 to 46097036 5 + TSS region transcription start site region 37106
Tssr37107 4 46106352 to 46106356 4 + TSS region transcription start site region 37107
Tssr37108 4 46114685 to 46114697 12 + TSS region transcription start site region 37108
Tstd2 4 46114746 to 46138682 23936 - protein coding gene thiosulfate sulfurtransferase (rhodanese)-like domain containing 2
Gm23250 4 46118180 to 46118446 266 + unclassified non-coding RNA gene predicted gene, 23250
Tssr41556 4 46129346 to 46129368 22 - TSS region transcription start site region 41556
Cpgi14246 4 46138163 to 46139181 1018 CpG island CpG island 14246
Tssr41557 4 46138356 to 46138375 19 - TSS region transcription start site region 41557
Tssr41558 4 46138398 to 46138464 66 - TSS region transcription start site region 41558
Tssr37109 4 46138484 to 46138521 37 + TSS region transcription start site region 37109
Tssr37110 4 46138529 to 46138558 29 + TSS region transcription start site region 37110
Tssr37111 4 46138577 to 46138594 17 + TSS region transcription start site region 37111
Ncbp1 4 46138613 to 46172403 33790 + protein coding gene nuclear cap binding protein subunit 1
Tssr41559 4 46138667 to 46138730 63 - TSS region transcription start site region 41559
Tssr37112 4 46138712 to 46138794 82 + TSS region transcription start site region 37112
Tssr37113 4 46138821 to 46138832 11 + TSS region transcription start site region 37113
Tssr37114 4 46166053 to 46166064 11 + TSS region transcription start site region 37114
Tssr37115 4 46166068 to 46166076 8 + TSS region transcription start site region 37115
Xpa 4 46174735 to 46196353 21618 - protein coding gene xeroderma pigmentosum, complementation group A
Tssr41560 4 46184312 to 46184318 6 - TSS region transcription start site region 41560
Tssr41561 4 46194325 to 46194328 3 - TSS region transcription start site region 41561
Cpgi14247 4 46195773 to 46196693 920 CpG island CpG island 14247
Tssr41562 4 46196273 to 46196284 11 - TSS region transcription start site region 41562
Tssr41563 4 46196298 to 46196332 34 - TSS region transcription start site region 41563
Gm31617 4 46202444 to 46207252 4808 + lncRNA gene predicted gene, 31617
Cpgi14248 4 46202649 to 46203074 425 CpG island CpG island 14248
Gm12444 4 46243014 to 46243890 876 - pseudogene predicted gene 12444
Gm12445 4 46273819 to 46274840 1021 - pseudogene predicted gene 12445
Gm12446 4 46300007 to 46345515 45508 - antisense lncRNA gene predicted gene 12446
Cpgi14249 4 46304197 to 46304377 180 CpG island CpG island 14249
Cpgi14250 4 46304798 to 46305785 987 CpG island CpG island 14250
Gm12447 4 46327296 to 46327765 469 + pseudogene predicted gene 12447
Gm42280 4 46327900 to 46330655 2755 + lncRNA gene predicted gene, 42280
D4Mit89 4 46332646 to 46332776 130 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 89
Arvm1 4 46332646 to 46332776 130 QTL autoimmune renal vasculitis 1
Agnm1 4 46332646 to 55755867 9423221 QTL autoimmune glomerulonephritis in MRL 1
Cpgi14251 4 46339571 to 46339964 393 CpG island CpG island 14251
Cpgi14252 4 46342454 to 46345747 3293 CpG island CpG island 14252
Tssr37116 4 46343637 to 46343655 18 + TSS region transcription start site region 37116
Foxe1 4 46344194 to 46345309 1115 + protein coding gene forkhead box E1
Cpgi14253 4 46348051 to 46348446 395 CpG island CpG island 14253
Cpgi14254 4 46371127 to 46371396 269 CpG island CpG island 14254
Tssr37117 4 46371151 to 46371161 10 + TSS region transcription start site region 37117
Cpgi14255 4 46374924 to 46375200 276 CpG island CpG island 14255
Trmo 4 46376505 to 46389437 12932 - protein coding gene tRNA methyltransferase O
Cpgi14256 4 46388995 to 46389871 876 CpG island CpG island 14256
Tssr41564 4 46389103 to 46389123 20 - TSS region transcription start site region 41564
Tssr41565 4 46389391 to 46389456 65 - TSS region transcription start site region 41565
Tssr37118 4 46389461 to 46389501 40 + TSS region transcription start site region 37118
Hemgn 4 46393989 to 46404183 10194 - protein coding gene hemogen
Tssr41566 4 46396861 to 46396873 12 - TSS region transcription start site region 41566
Tssr1165 4 46403950 to 46403955 5 - TSS region transcription start site region 1165
Tssr41567 4 46404012 to 46404023 11 - TSS region transcription start site region 41567
Tssr41568 4 46404027 to 46404036 9 - TSS region transcription start site region 41568
Tssr41569 4 46404041 to 46404058 17 - TSS region transcription start site region 41569
Tssr41570 4 46404068 to 46404094 26 - TSS region transcription start site region 41570
Tssr41571 4 46404125 to 46404140 15 - TSS region transcription start site region 41571
Tssr41572 4 46404149 to 46404160 11 - TSS region transcription start site region 41572
Tssr41573 4 46404224 to 46404240 16 - TSS region transcription start site region 41573
Tssr41574 4 46404330 to 46404339 9 - TSS region transcription start site region 41574
Tssr41575 4 46413469 to 46413483 14 - TSS region transcription start site region 41575
Tssr41576 4 46413486 to 46413489 3 - TSS region transcription start site region 41576
Gm12443 4 46419980 to 46420302 322 - pseudogene predicted gene 12443
Cpgi14257 4 46450454 to 46452848 2394 CpG island CpG island 14257
Tssr37119 4 46450871 to 46450887 16 + TSS region transcription start site region 37119
Tssr37120 4 46450892 to 46450903 11 + TSS region transcription start site region 37120
Tssr37121 4 46450912 to 46450994 82 + TSS region transcription start site region 37121
Tssr37122 4 46451044 to 46451051 7 + TSS region transcription start site region 37122
Tssr37123 4 46451080 to 46451111 31 + TSS region transcription start site region 37123
Anp32b 4 46451117 to 46472532 21415 + protein coding gene acidic (leucine-rich) nuclear phosphoprotein 32 family, member B
Tssr37124 4 46451118 to 46451126 8 + TSS region transcription start site region 37124
Tssr37125 4 46451146 to 46451157 11 + TSS region transcription start site region 37125
Tssr41577 4 46451465 to 46451486 21 - TSS region transcription start site region 41577
Tssr37126 4 46452160 to 46452224 64 + TSS region transcription start site region 37126
Tssr41578 4 46452572 to 46452615 43 - TSS region transcription start site region 41578
Tssr37127 4 46454795 to 46454802 7 + TSS region transcription start site region 37127
Tssr37128 4 46463852 to 46463893 41 + TSS region transcription start site region 37128
Tssr37129 4 46468665 to 46468677 12 + TSS region transcription start site region 37129
Tssr37130 4 46468679 to 46468702 23 + TSS region transcription start site region 37130
Tssr37131 4 46468708 to 46468736 28 + TSS region transcription start site region 37131
Tssr41579 4 46468759 to 46468790 31 - TSS region transcription start site region 41579
Tssr37132 4 46469912 to 46469944 32 + TSS region transcription start site region 37132
Tssr41580 4 46469946 to 46469992 46 - TSS region transcription start site region 41580
Tssr37133 4 46469960 to 46469985 25 + TSS region transcription start site region 37133
Tssr41581 4 46469993 to 46470015 22 - TSS region transcription start site region 41581
Tssr37134 4 46471394 to 46471400 6 + TSS region transcription start site region 37134
Tssr41582 4 46472122 to 46472168 46 - TSS region transcription start site region 41582
Tssr37135 4 46472570 to 46472575 5 + TSS region transcription start site region 37135
D4Mit38 4 46479238 to 46479441 203 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 38
Cpgi14258 4 46489055 to 46489823 768 CpG island CpG island 14258
Tssr37136 4 46489274 to 46489356 82 + TSS region transcription start site region 37136
Nans 4 46489329 to 46503438 14109 + protein coding gene N-acetylneuraminic acid synthase (sialic acid synthase)
Tssr37137 4 46489375 to 46489382 7 + TSS region transcription start site region 37137
Gm22247 4 46495155 to 46495285 130 + snoRNA gene predicted gene, 22247
Tssr41583 4 46503458 to 46503462 4 - TSS region transcription start site region 41583
Trim14 4 46505072 to 46536154 31082 - protein coding gene tripartite motif-containing 14
Cpgi14259 4 46506622 to 46507662 1040 CpG island CpG island 14259
Tssr41584 4 46506829 to 46506843 14 - TSS region transcription start site region 41584
Tssr37138 4 46508395 to 46508397 2 + TSS region transcription start site region 37138
Tssr41585 4 46509304 to 46509324 20 - TSS region transcription start site region 41585
Tssr41586 4 46528371 to 46528384 13 - TSS region transcription start site region 41586
Cpgi14260 4 46534157 to 46534874 717 CpG island CpG island 14260
Tssr41587 4 46534582 to 46534615 33 - TSS region transcription start site region 41587
Cpgi14261 4 46535554 to 46536424 870 CpG island CpG island 14261
Tssr41588 4 46536096 to 46536130 34 - TSS region transcription start site region 41588
Tssr41589 4 46536134 to 46536143 9 - TSS region transcription start site region 41589
Coro2a 4 46536937 to 46601929 64992 - protein coding gene coronin, actin binding protein 2A
Tssr41590 4 46537590 to 46537593 3 - TSS region transcription start site region 41590
Tssr41591 4 46538389 to 46538408 19 - TSS region transcription start site region 41591
Tssr37139 4 46538866 to 46538867 1 + TSS region transcription start site region 37139
Gm16731 4 46539092 to 46539883 791 + lncRNA gene predicted gene, 16731
Tssr41592 4 46549253 to 46549266 13 - TSS region transcription start site region 41592
Tssr1166 4 46562958 to 46562968 10 - TSS region transcription start site region 1166
Tssr41593 4 46566432 to 46566471 39 - TSS region transcription start site region 41593
Tssr41594 4 46566484 to 46566489 5 - TSS region transcription start site region 41594
4930566K23Rik 4 46567136 to 46567914 778 unclassified gene RIKEN cDNA 4930566K23 gene
Tssr37140 4 46576800 to 46576803 3 + TSS region transcription start site region 37140
BC005685 4 46577209 to 46578785 1576 protein coding gene cDNA sequence BC005685
Tssr41595 4 46591863 to 46591867 4 - TSS region transcription start site region 41595
D4Mit162.1 4 46599181 to 46599300 119 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 162.1
D4Mit162 4 46599267 to 46599403 136 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 162
D4Mit162.2 4 46599359 to 46599470 111 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 162.2
Cpgi14262 4 46601086 to 46602357 1271 CpG island CpG island 14262
Tssr37141 4 46601341 to 46601374 33 + TSS region transcription start site region 37141
Tssr41596 4 46601871 to 46601911 40 - TSS region transcription start site region 41596
Tssr1167 4 46601925 to 46601944 19 - TSS region transcription start site region 1167
Tssr37142 4 46602026 to 46602035 9 + TSS region transcription start site region 37142
Tssr41597 4 46602193 to 46602224 31 - TSS region transcription start site region 41597
Tbc1d2 4 46604390 to 46650209 45819 - protein coding gene TBC1 domain family, member 2
Gm31850 4 46607149 to 46610128 2979 + lncRNA gene predicted gene, 31850
Cpgi14263 4 46614859 to 46615068 209 CpG island CpG island 14263
Cpgi14264 4 46620312 to 46620802 490 CpG island CpG island 14264
Gm42281 4 46621599 to 46628333 6734 + lncRNA gene predicted gene, 42281
Tssr41598 4 46630067 to 46630078 11 - TSS region transcription start site region 41598
D4Mit53 4 46642108 to 46642298 190 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 53
Tssr41599 4 46648780 to 46648792 12 - TSS region transcription start site region 41599
Cpgi14265 4 46649659 to 46650943 1284 CpG island CpG island 14265
Tssr41600 4 46650049 to 46650078 29 - TSS region transcription start site region 41600
Tssr41601 4 46650085 to 46650100 15 - TSS region transcription start site region 41601
Tssr41602 4 46650102 to 46650125 23 - TSS region transcription start site region 41602
Tssr41603 4 46650157 to 46650234 77 - TSS region transcription start site region 41603
Tssr37143 4 46650271 to 46650317 46 + TSS region transcription start site region 37143
Tssr41604 4 46662635 to 46662652 17 - TSS region transcription start site region 41604
Gabbr2 4 46663898 to 46991714 327816 - protein coding gene gamma-aminobutyric acid (GABA) B receptor, 2
Cpgi14266 4 46664547 to 46664974 427 CpG island CpG island 14266
Tssr37144 4 46668882 to 46668886 4 + TSS region transcription start site region 37144
Tssr41605 4 46677630 to 46677642 12 - TSS region transcription start site region 41605
Tssr41606 4 46749026 to 46749030 4 - TSS region transcription start site region 41606
Tssr1168 4 46752579 to 46752606 27 + TSS region transcription start site region 1168
Tssr37145 4 46787603 to 46787624 21 + TSS region transcription start site region 37145
Cpgi14267 4 46846136 to 46846439 303 CpG island CpG island 14267
Tssr37146 4 46854270 to 46854292 22 + TSS region transcription start site region 37146
Gm32208 4 46860170 to 46877704 17534 + lncRNA gene predicted gene, 32208
Gm32135 4 46884066 to 46897624 13558 + lncRNA gene predicted gene, 32135
Tssr41607 4 46941184 to 46941201 17 - TSS region transcription start site region 41607
Cpgi14268 4 46989984 to 46992460 2476 CpG island CpG island 14268
Tssr41608 4 46991516 to 46991527 11 - TSS region transcription start site region 41608
Tssr41609 4 46991536 to 46991650 114 - TSS region transcription start site region 41609
Tssr41610 4 46991678 to 46991714 36 - TSS region transcription start site region 41610
Tssr41611 4 46991761 to 46991782 21 - TSS region transcription start site region 41611
Tssr41612 4 46991822 to 46991831 9 - TSS region transcription start site region 41612
Tssr41613 4 46991842 to 46991916 74 - TSS region transcription start site region 41613
Tssr41614 4 46992038 to 46992042 4 - TSS region transcription start site region 41614