Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:45648989-46348998

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124 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aaom1 4 24322299 to 46332776 22010477 QTL autoimmune aoritis in MRL mice 1
Ssrq9 4 34395160 to 46332776 11937616 QTL stress response QTL 9
Mmtg1 4 45658442 to 83180920 37522478 QTL modifier of mammary tumor growth 1
Lch2 4 45658442 to 67182171 21523729 heritable phenotypic marker low cholesterol 2
Lch 4 45658442 to 67182171 21523729 heritable phenotypic marker low cholesterol
D4Mit214 4 45658442 to 45658566 124 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 214
Stheal3 4 45658442 to 45658566 124 QTL soft tissue heal 3
Gm829 4 45683589 to 45723338 39749 + lincRNA gene predicted gene 829
D4Mit55 4 45709925 to 45710107 182 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 55
Synch1 4 45709925 to 45710107 182 QTL synechia 1
Gm12410 4 45715169 to 45716421 1252 + lincRNA gene predicted gene 12410
Gm31563 4 45723773 to 45740301 16528 - lncRNA gene predicted gene, 31563
Cpgi14237 4 45741103 to 45741284 181 CpG island CpG island 14237
Tssr1163 4 45741950 to 45741952 2 + TSS region transcription start site region 1163
Cpgi14238 4 45755926 to 45756096 170 CpG island CpG island 14238
Gm12409 4 45762377 to 45764223 1846 - lncRNA gene predicted gene 12409
Cpgi14239 4 45763896 to 45764236 340 CpG island CpG island 14239
Tssr41546 4 45770738 to 45770743 5 - TSS region transcription start site region 41546
Gm12412 4 45776882 to 45777209 327 - pseudogene predicted gene 12412
Tssr37069 4 45798885 to 45798925 40 + TSS region transcription start site region 37069
Cpgi14240 4 45798911 to 45799324 413 CpG island CpG island 14240
Tssr37070 4 45799016 to 45799056 40 + TSS region transcription start site region 37070
Aldh1b1 4 45799022 to 45804604 5582 + protein coding gene aldehyde dehydrogenase 1 family, member B1
Tssr37071 4 45799059 to 45799149 90 + TSS region transcription start site region 37071
Tssr37072 4 45804867 to 45804890 23 + TSS region transcription start site region 37072
Igfbpl1 4 45809507 to 45826827 17320 - protein coding gene insulin-like growth factor binding protein-like 1
Tssr41547 4 45811172 to 45811200 28 - TSS region transcription start site region 41547
Tssr41548 4 45811306 to 45811310 4 - TSS region transcription start site region 41548
Tssr41549 4 45815549 to 45815561 12 - TSS region transcription start site region 41549
Tssr41550 4 45816312 to 45816318 6 - TSS region transcription start site region 41550
Tssr37073 4 45824268 to 45824312 44 + TSS region transcription start site region 37073
Cpgi14241 4 45825893 to 45827201 1308 CpG island CpG island 14241
Tssr41551 4 45826802 to 45826813 11 - TSS region transcription start site region 41551
Tssr41552 4 45826819 to 45826834 15 - TSS region transcription start site region 41552
Tssr41553 4 45826852 to 45826863 11 - TSS region transcription start site region 41553
Tssr41554 4 45826946 to 45826962 16 - TSS region transcription start site region 41554
Tssr41555 4 45826963 to 45826974 11 - TSS region transcription start site region 41555
D4Mit269 4 45834494 to 45834715 221 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 269
Tssr37074 4 45848326 to 45848374 48 + TSS region transcription start site region 37074
Stra6l 4 45848664 to 45887008 38344 + protein coding gene STRA6-like
Tssr37075 4 45848675 to 45848696 21 + TSS region transcription start site region 37075
Tssr37076 4 45848883 to 45848910 27 + TSS region transcription start site region 37076
Tssr37077 4 45848920 to 45848950 30 + TSS region transcription start site region 37077
Tssr37078 4 45848958 to 45849016 58 + TSS region transcription start site region 37078
Tssr37079 4 45849021 to 45849037 16 + TSS region transcription start site region 37079
Cpgi14242 4 45869194 to 45869476 282 CpG island CpG island 14242
Ccdc180 4 45890303 to 45950774 60471 + protein coding gene coiled-coil domain containing 180
Tssr37080 4 45890307 to 45890340 33 + TSS region transcription start site region 37080
Tssr37081 4 45890358 to 45890364 6 + TSS region transcription start site region 37081
Tssr37082 4 45932635 to 45932668 33 + TSS region transcription start site region 37082
Tssr37083 4 45949389 to 45949440 51 + TSS region transcription start site region 37083
Cpgi14243 4 45953419 to 45953766 347 CpG island CpG island 14243
Tssr37084 4 45965327 to 45965342 15 + TSS region transcription start site region 37084
Tdrd7 4 45965334 to 46034761 69427 + protein coding gene tudor domain containing 7
Cpgi14244 4 45971984 to 45973003 1019 CpG island CpG island 14244
Tssr1164 4 45972144 to 45972174 30 + TSS region transcription start site region 1164
Tssr37085 4 45972235 to 45972245 10 + TSS region transcription start site region 37085
Tssr37086 4 45972288 to 45972325 37 + TSS region transcription start site region 37086
Tssr37087 4 45972337 to 45972365 28 + TSS region transcription start site region 37087
Tssr37088 4 45972375 to 45972386 11 + TSS region transcription start site region 37088
Tssr37089 4 45972394 to 45972405 11 + TSS region transcription start site region 37089
Tssr37090 4 45972673 to 45972697 24 + TSS region transcription start site region 37090
Tssr37091 4 45972766 to 45972787 21 + TSS region transcription start site region 37091
Tssr37092 4 45972792 to 45972810 18 + TSS region transcription start site region 37092
Tssr37093 4 45998955 to 45998966 11 + TSS region transcription start site region 37093
Tssr37094 4 45998989 to 45998998 9 + TSS region transcription start site region 37094
Tssr37095 4 46000448 to 46000474 26 + TSS region transcription start site region 37095
Tssr37096 4 46031378 to 46031381 3 + TSS region transcription start site region 37096
Cpgi14245 4 46038769 to 46039951 1182 CpG island CpG island 14245
Tmod1 4 46038940 to 46116032 77092 + protein coding gene tropomodulin 1
Tssr37097 4 46039202 to 46039213 11 + TSS region transcription start site region 37097
Tssr37098 4 46039217 to 46039280 63 + TSS region transcription start site region 37098
Tssr37099 4 46040977 to 46040981 4 + TSS region transcription start site region 37099
D4Mit270 4 46055896 to 46056006 110 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 270
Tssr37100 4 46077152 to 46077168 16 + TSS region transcription start site region 37100
Tssr37101 4 46077172 to 46077177 5 + TSS region transcription start site region 37101
Tssr37102 4 46077183 to 46077191 8 + TSS region transcription start site region 37102
Tssr37103 4 46078947 to 46078952 5 + TSS region transcription start site region 37103
Tssr37104 4 46082176 to 46082188 12 + TSS region transcription start site region 37104
Tssr37105 4 46082870 to 46082891 21 + TSS region transcription start site region 37105
Tssr37106 4 46097031 to 46097036 5 + TSS region transcription start site region 37106
Tssr37107 4 46106352 to 46106356 4 + TSS region transcription start site region 37107
Tssr37108 4 46114685 to 46114697 12 + TSS region transcription start site region 37108
Tstd2 4 46114746 to 46138682 23936 - protein coding gene thiosulfate sulfurtransferase (rhodanese)-like domain containing 2
Gm23250 4 46118180 to 46118446 266 + unclassified non-coding RNA gene predicted gene, 23250
Tssr41556 4 46129346 to 46129368 22 - TSS region transcription start site region 41556
Cpgi14246 4 46138163 to 46139181 1018 CpG island CpG island 14246
Tssr41557 4 46138356 to 46138375 19 - TSS region transcription start site region 41557
Tssr41558 4 46138398 to 46138464 66 - TSS region transcription start site region 41558
Tssr37109 4 46138484 to 46138521 37 + TSS region transcription start site region 37109
Tssr37110 4 46138529 to 46138558 29 + TSS region transcription start site region 37110
Tssr37111 4 46138577 to 46138594 17 + TSS region transcription start site region 37111
Ncbp1 4 46138613 to 46172403 33790 + protein coding gene nuclear cap binding protein subunit 1
Tssr41559 4 46138667 to 46138730 63 - TSS region transcription start site region 41559
Tssr37112 4 46138712 to 46138794 82 + TSS region transcription start site region 37112
Tssr37113 4 46138821 to 46138832 11 + TSS region transcription start site region 37113
Tssr37114 4 46166053 to 46166064 11 + TSS region transcription start site region 37114
Tssr37115 4 46166068 to 46166076 8 + TSS region transcription start site region 37115
Xpa 4 46174735 to 46196353 21618 - protein coding gene xeroderma pigmentosum, complementation group A
Tssr41560 4 46184312 to 46184318 6 - TSS region transcription start site region 41560
Tssr41561 4 46194325 to 46194328 3 - TSS region transcription start site region 41561
Cpgi14247 4 46195773 to 46196693 920 CpG island CpG island 14247
Tssr41562 4 46196273 to 46196284 11 - TSS region transcription start site region 41562
Tssr41563 4 46196298 to 46196332 34 - TSS region transcription start site region 41563
Gm31617 4 46202444 to 46207252 4808 + lncRNA gene predicted gene, 31617
Cpgi14248 4 46202649 to 46203074 425 CpG island CpG island 14248
Gm12444 4 46243014 to 46243890 876 - pseudogene predicted gene 12444
Gm12445 4 46273819 to 46274840 1021 - pseudogene predicted gene 12445
Gm12446 4 46300007 to 46345515 45508 - antisense lncRNA gene predicted gene 12446
Cpgi14249 4 46304197 to 46304377 180 CpG island CpG island 14249
Cpgi14250 4 46304798 to 46305785 987 CpG island CpG island 14250
Gm12447 4 46327296 to 46327765 469 + pseudogene predicted gene 12447
Gm42280 4 46327900 to 46330655 2755 + lncRNA gene predicted gene, 42280
D4Mit89 4 46332646 to 46332776 130 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 89
Arvm1 4 46332646 to 46332776 130 QTL autoimmune renal vasculitis 1
Agnm1 4 46332646 to 55755867 9423221 QTL autoimmune glomerulonephritis in MRL 1
Cpgi14251 4 46339571 to 46339964 393 CpG island CpG island 14251
Cpgi14252 4 46342454 to 46345747 3293 CpG island CpG island 14252
Tssr37116 4 46343637 to 46343655 18 + TSS region transcription start site region 37116
Foxe1 4 46344194 to 46345309 1115 + protein coding gene forkhead box E1
Cpgi14253 4 46348051 to 46348446 395 CpG island CpG island 14253
Ath8 4 105299798 to 45658442 -59641356 QTL atherosclerosis 8
Pabr2 4 105944663 to 46332646 -59612017 QTL plasma apolipoprotein B (human) regulator 2
Ctrcts 4 138615442 to 45709925 -92905517 QTL cataract severity