Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:45415169-46016421

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm46852 4 45409390 to 45423213 13823 + lncRNA gene predicted gene, 46852
Shb 4 45423276 to 45530828 107552 - protein coding gene src homology 2 domain-containing transforming protein B
Tssr41541 4 45482763 to 45482777 14 - TSS region transcription start site region 41541
Tssr41542 4 45489247 to 45489258 11 - TSS region transcription start site region 41542
Tssr41543 4 45489268 to 45489279 11 - TSS region transcription start site region 41543
Gm22518 4 45500485 to 45500552 67 - miRNA gene predicted gene, 22518
Tssr41544 4 45514118 to 45514121 3 - TSS region transcription start site region 41544
Cpgi14236 4 45529248 to 45531331 2083 CpG island CpG island 14236
Tssr41545 4 45530752 to 45530816 64 - TSS region transcription start site region 41545
Gm22055 4 45548743 to 45548849 106 + snRNA gene predicted gene, 22055
Gm12411 4 45550017 to 45550499 482 + pseudogene predicted gene 12411
Gm12408 4 45639368 to 45645497 6129 + lincRNA gene predicted gene 12408
Tssr37068 4 45640777 to 45640790 13 + TSS region transcription start site region 37068
Mmtg1 4 45658442 to 83180920 37522478 QTL modifier of mammary tumor growth 1
Lch 4 45658442 to 67182171 21523729 heritable phenotypic marker low cholesterol
Stheal3 4 45658442 to 45658566 124 QTL soft tissue heal 3
Lch2 4 45658442 to 67182171 21523729 heritable phenotypic marker low cholesterol 2
D4Mit214 4 45658442 to 45658566 124 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 214
Gm829 4 45683589 to 45723338 39749 + lincRNA gene predicted gene 829
D4Mit55 4 45709925 to 45710107 182 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 55
Synch1 4 45709925 to 45710107 182 QTL synechia 1
Gm12410 4 45715169 to 45716421 1252 + lincRNA gene predicted gene 12410
Gm31563 4 45723773 to 45740301 16528 - lncRNA gene predicted gene, 31563
Cpgi14237 4 45741103 to 45741284 181 CpG island CpG island 14237
Tssr1163 4 45741950 to 45741952 2 + TSS region transcription start site region 1163
Cpgi14238 4 45755926 to 45756096 170 CpG island CpG island 14238
Gm12409 4 45762377 to 45764223 1846 - lncRNA gene predicted gene 12409
Cpgi14239 4 45763896 to 45764236 340 CpG island CpG island 14239
Tssr41546 4 45770738 to 45770743 5 - TSS region transcription start site region 41546
Gm12412 4 45776882 to 45777209 327 - pseudogene predicted gene 12412
Tssr37069 4 45798885 to 45798925 40 + TSS region transcription start site region 37069
Cpgi14240 4 45798911 to 45799324 413 CpG island CpG island 14240
Tssr37070 4 45799016 to 45799056 40 + TSS region transcription start site region 37070
Aldh1b1 4 45799022 to 45804604 5582 + protein coding gene aldehyde dehydrogenase 1 family, member B1
Tssr37071 4 45799059 to 45799149 90 + TSS region transcription start site region 37071
Tssr37072 4 45804867 to 45804890 23 + TSS region transcription start site region 37072
Igfbpl1 4 45809507 to 45826827 17320 - protein coding gene insulin-like growth factor binding protein-like 1
Tssr41547 4 45811172 to 45811200 28 - TSS region transcription start site region 41547
Tssr41548 4 45811306 to 45811310 4 - TSS region transcription start site region 41548
Tssr41549 4 45815549 to 45815561 12 - TSS region transcription start site region 41549
Tssr41550 4 45816312 to 45816318 6 - TSS region transcription start site region 41550
Tssr37073 4 45824268 to 45824312 44 + TSS region transcription start site region 37073
Cpgi14241 4 45825893 to 45827201 1308 CpG island CpG island 14241
Tssr41551 4 45826802 to 45826813 11 - TSS region transcription start site region 41551
Tssr41552 4 45826819 to 45826834 15 - TSS region transcription start site region 41552
Tssr41553 4 45826852 to 45826863 11 - TSS region transcription start site region 41553
Tssr41554 4 45826946 to 45826962 16 - TSS region transcription start site region 41554
Tssr41555 4 45826963 to 45826974 11 - TSS region transcription start site region 41555
D4Mit269 4 45834494 to 45834715 221 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 269
Tssr37074 4 45848326 to 45848374 48 + TSS region transcription start site region 37074
Stra6l 4 45848664 to 45887008 38344 + protein coding gene STRA6-like
Tssr37075 4 45848675 to 45848696 21 + TSS region transcription start site region 37075
Tssr37076 4 45848883 to 45848910 27 + TSS region transcription start site region 37076
Tssr37077 4 45848920 to 45848950 30 + TSS region transcription start site region 37077
Tssr37078 4 45848958 to 45849016 58 + TSS region transcription start site region 37078
Tssr37079 4 45849021 to 45849037 16 + TSS region transcription start site region 37079
Cpgi14242 4 45869194 to 45869476 282 CpG island CpG island 14242
Ccdc180 4 45890303 to 45950774 60471 + protein coding gene coiled-coil domain containing 180
Tssr37080 4 45890307 to 45890340 33 + TSS region transcription start site region 37080
Tssr37081 4 45890358 to 45890364 6 + TSS region transcription start site region 37081
Tssr37082 4 45932635 to 45932668 33 + TSS region transcription start site region 37082
Tssr37083 4 45949389 to 45949440 51 + TSS region transcription start site region 37083
Cpgi14243 4 45953419 to 45953766 347 CpG island CpG island 14243
Tssr37084 4 45965327 to 45965342 15 + TSS region transcription start site region 37084
Tdrd7 4 45965334 to 46034761 69427 + protein coding gene tudor domain containing 7
Cpgi14244 4 45971984 to 45973003 1019 CpG island CpG island 14244
Tssr1164 4 45972144 to 45972174 30 + TSS region transcription start site region 1164
Tssr37085 4 45972235 to 45972245 10 + TSS region transcription start site region 37085
Tssr37086 4 45972288 to 45972325 37 + TSS region transcription start site region 37086
Tssr37087 4 45972337 to 45972365 28 + TSS region transcription start site region 37087
Tssr37088 4 45972375 to 45972386 11 + TSS region transcription start site region 37088
Tssr37089 4 45972394 to 45972405 11 + TSS region transcription start site region 37089
Tssr37090 4 45972673 to 45972697 24 + TSS region transcription start site region 37090
Tssr37091 4 45972766 to 45972787 21 + TSS region transcription start site region 37091
Tssr37092 4 45972792 to 45972810 18 + TSS region transcription start site region 37092
Tssr37093 4 45998955 to 45998966 11 + TSS region transcription start site region 37093
Tssr37094 4 45998989 to 45998998 9 + TSS region transcription start site region 37094
Tssr37095 4 46000448 to 46000474 26 + TSS region transcription start site region 37095
Ath8 4 105299798 to 45658442 -59641356 QTL atherosclerosis 8
Ctrcts 4 138615442 to 45709925 -92905517 QTL cataract severity