Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:45225017-45875499

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Frmpd1 4 45184875 to 45285936 101061 + protein coding gene FERM and PDZ domain containing 1
D4Mit238 4 45230131 to 45230241 110 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 238
Frmpd1os 4 45234723 to 45243990 9267 - antisense lncRNA gene FERM and PDZ domain containing 1, opposite strand
Trmt10b 4 45297127 to 45316131 19004 + protein coding gene tRNA methyltransferase 10B
Tssr37059 4 45297150 to 45297175 25 + TSS region transcription start site region 37059
Cpgi14232 4 45297246 to 45297499 253 CpG island CpG island 14232
Exosc3 4 45316629 to 45320603 3974 - protein coding gene exosome component 3
Cpgi14233 4 45320032 to 45320865 833 CpG island CpG island 14233
Tssr41531 4 45320270 to 45320283 13 - TSS region transcription start site region 41531
Tssr37060 4 45320373 to 45320383 10 + TSS region transcription start site region 37060
Tssr41532 4 45320376 to 45320438 62 - TSS region transcription start site region 41532
Tssr37061 4 45320385 to 45320397 12 + TSS region transcription start site region 37061
Tssr37062 4 45320418 to 45320429 11 + TSS region transcription start site region 37062
Tssr41533 4 45320462 to 45320473 11 - TSS region transcription start site region 41533
Tssr41534 4 45320580 to 45320634 54 - TSS region transcription start site region 41534
Tssr37063 4 45331930 to 45331932 2 + TSS region transcription start site region 37063
Gm31017 4 45332386 to 45336787 4401 - lncRNA gene predicted gene, 31017
D4Mit138 4 45334483 to 45334611 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 138
Gm12585 4 45338745 to 45339034 289 - pseudogene predicted gene 12585
Cpgi14234 4 45341721 to 45342927 1206 CpG island CpG island 14234
Tssr37064 4 45342063 to 45342134 71 + TSS region transcription start site region 37064
Dcaf10 4 45342094 to 45379732 37638 + protein coding gene DDB1 and CUL4 associated factor 10
Tssr37065 4 45342192 to 45342242 50 + TSS region transcription start site region 37065
Tssr37066 4 45342251 to 45342281 30 + TSS region transcription start site region 37066
Tssr1162 4 45346553 to 45346581 28 - TSS region transcription start site region 1162
Tssr41535 4 45346622 to 45346657 35 - TSS region transcription start site region 41535
Slc25a51 4 45395923 to 45408766 12843 - protein coding gene solute carrier family 25, member 51
Gm25692 4 45396994 to 45397118 124 - miRNA gene predicted gene, 25692
Tssr41536 4 45397646 to 45397659 13 - TSS region transcription start site region 41536
Cpgi14235 4 45408172 to 45409363 1191 CpG island CpG island 14235
Tssr41537 4 45408721 to 45408768 47 - TSS region transcription start site region 41537
Tssr41538 4 45408878 to 45408907 29 - TSS region transcription start site region 41538
Tssr41539 4 45408908 to 45408937 29 - TSS region transcription start site region 41539
Tssr37067 4 45409108 to 45409111 3 + TSS region transcription start site region 37067
Gm46852 4 45409390 to 45423213 13823 + lncRNA gene predicted gene, 46852
Tssr41540 4 45409450 to 45409462 12 - TSS region transcription start site region 41540
Shb 4 45423276 to 45530828 107552 - protein coding gene src homology 2 domain-containing transforming protein B
Tssr41541 4 45482763 to 45482777 14 - TSS region transcription start site region 41541
Tssr41542 4 45489247 to 45489258 11 - TSS region transcription start site region 41542
Tssr41543 4 45489268 to 45489279 11 - TSS region transcription start site region 41543
Gm22518 4 45500485 to 45500552 67 - miRNA gene predicted gene, 22518
Tssr41544 4 45514118 to 45514121 3 - TSS region transcription start site region 41544
Cpgi14236 4 45529248 to 45531331 2083 CpG island CpG island 14236
Tssr41545 4 45530752 to 45530816 64 - TSS region transcription start site region 41545
Gm22055 4 45548743 to 45548849 106 + snRNA gene predicted gene, 22055
Gm12411 4 45550017 to 45550499 482 + pseudogene predicted gene 12411
Gm12408 4 45639368 to 45645497 6129 + lincRNA gene predicted gene 12408
Tssr37068 4 45640777 to 45640790 13 + TSS region transcription start site region 37068
Lch 4 45658442 to 67182171 21523729 heritable phenotypic marker low cholesterol
Stheal3 4 45658442 to 45658566 124 QTL soft tissue heal 3
D4Mit214 4 45658442 to 45658566 124 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 214
Lch2 4 45658442 to 67182171 21523729 heritable phenotypic marker low cholesterol 2
Mmtg1 4 45658442 to 83180920 37522478 QTL modifier of mammary tumor growth 1
Gm829 4 45683589 to 45723338 39749 + lincRNA gene predicted gene 829
D4Mit55 4 45709925 to 45710107 182 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 55
Synch1 4 45709925 to 45710107 182 QTL synechia 1
Gm12410 4 45715169 to 45716421 1252 + lincRNA gene predicted gene 12410
Gm31563 4 45723773 to 45740301 16528 - lncRNA gene predicted gene, 31563
Cpgi14237 4 45741103 to 45741284 181 CpG island CpG island 14237
Tssr1163 4 45741950 to 45741952 2 + TSS region transcription start site region 1163
Cpgi14238 4 45755926 to 45756096 170 CpG island CpG island 14238
Gm12409 4 45762377 to 45764223 1846 - lncRNA gene predicted gene 12409
Cpgi14239 4 45763896 to 45764236 340 CpG island CpG island 14239
Tssr41546 4 45770738 to 45770743 5 - TSS region transcription start site region 41546
Gm12412 4 45776882 to 45777209 327 - pseudogene predicted gene 12412
Tssr37069 4 45798885 to 45798925 40 + TSS region transcription start site region 37069
Cpgi14240 4 45798911 to 45799324 413 CpG island CpG island 14240
Tssr37070 4 45799016 to 45799056 40 + TSS region transcription start site region 37070
Aldh1b1 4 45799022 to 45804604 5582 + protein coding gene aldehyde dehydrogenase 1 family, member B1
Tssr37071 4 45799059 to 45799149 90 + TSS region transcription start site region 37071
Tssr37072 4 45804867 to 45804890 23 + TSS region transcription start site region 37072
Igfbpl1 4 45809507 to 45826827 17320 - protein coding gene insulin-like growth factor binding protein-like 1
Tssr41547 4 45811172 to 45811200 28 - TSS region transcription start site region 41547
Tssr41548 4 45811306 to 45811310 4 - TSS region transcription start site region 41548
Tssr41549 4 45815549 to 45815561 12 - TSS region transcription start site region 41549
Tssr41550 4 45816312 to 45816318 6 - TSS region transcription start site region 41550
Tssr37073 4 45824268 to 45824312 44 + TSS region transcription start site region 37073
Cpgi14241 4 45825893 to 45827201 1308 CpG island CpG island 14241
Tssr41551 4 45826802 to 45826813 11 - TSS region transcription start site region 41551
Tssr41552 4 45826819 to 45826834 15 - TSS region transcription start site region 41552
Tssr41553 4 45826852 to 45826863 11 - TSS region transcription start site region 41553
Tssr41554 4 45826946 to 45826962 16 - TSS region transcription start site region 41554
Tssr41555 4 45826963 to 45826974 11 - TSS region transcription start site region 41555
D4Mit269 4 45834494 to 45834715 221 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 269
Tssr37074 4 45848326 to 45848374 48 + TSS region transcription start site region 37074
Stra6l 4 45848664 to 45887008 38344 + protein coding gene STRA6-like
Tssr37075 4 45848675 to 45848696 21 + TSS region transcription start site region 37075
Tssr37076 4 45848883 to 45848910 27 + TSS region transcription start site region 37076
Tssr37077 4 45848920 to 45848950 30 + TSS region transcription start site region 37077
Tssr37078 4 45848958 to 45849016 58 + TSS region transcription start site region 37078
Tssr37079 4 45849021 to 45849037 16 + TSS region transcription start site region 37079
Cpgi14242 4 45869194 to 45869476 282 CpG island CpG island 14242
Ath8 4 105299798 to 45658442 -59641356 QTL atherosclerosis 8
Ctrcts 4 138615442 to 45709925 -92905517 QTL cataract severity