Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:44701758-45321771

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95 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pax5 4 44526269 to 44710440 184171 - protein coding gene paired box 5
Cpgi14217 4 44701913 to 44702495 582 CpG island CpG island 14217
5730488B01Rik 4 44702800 to 44705110 2310 + lncRNA gene RIKEN cDNA 5730488B01 gene
Cpgi14218 4 44703077 to 44704841 1764 CpG island CpG island 14218
Tssr41517 4 44704436 to 44704449 13 - TSS region transcription start site region 41517
Tssr41518 4 44704462 to 44704495 33 - TSS region transcription start site region 41518
Tssr37031 4 44705443 to 44705447 4 + TSS region transcription start site region 37031
D4Mit257 4 44709353 to 44709486 133 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 257
Tssr41519 4 44710648 to 44710672 24 - TSS region transcription start site region 41519
Tssr41520 4 44710687 to 44710721 34 - TSS region transcription start site region 41520
Cpgi14219 4 44710711 to 44711163 452 CpG island CpG island 14219
Tssr41521 4 44710761 to 44710774 13 - TSS region transcription start site region 41521
Tssr37032 4 44710914 to 44710918 4 + TSS region transcription start site region 37032
Tssr41522 4 44710963 to 44710977 14 - TSS region transcription start site region 41522
Cpgi14220 4 44711729 to 44712339 610 CpG island CpG island 14220
Cpgi14221 4 44712820 to 44713700 880 CpG island CpG island 14221
Cpgi14222 4 44714031 to 44714567 536 CpG island CpG island 14222
Tssr41523 4 44714321 to 44714352 31 - TSS region transcription start site region 41523
Gm12463 4 44752277 to 44753125 848 - pseudogene predicted gene 12463
Cpgi14223 4 44756126 to 44757155 1029 CpG island CpG island 14223
Tssr37033 4 44756553 to 44756601 48 + TSS region transcription start site region 37033
Zcchc7 4 44756557 to 44932215 175658 + protein coding gene zinc finger, CCHC domain containing 7
Tssr37034 4 44756609 to 44756682 73 + TSS region transcription start site region 37034
Tssr37035 4 44756686 to 44756697 11 + TSS region transcription start site region 37035
Tssr1161 4 44771436 to 44771446 10 + TSS region transcription start site region 1161
Tssr37036 4 44807513 to 44807530 17 + TSS region transcription start site region 37036
Tssr37037 4 44824085 to 44824089 4 + TSS region transcription start site region 37037
Gm22639 4 44865307 to 44865431 124 + miRNA gene predicted gene, 22639
Tssr37038 4 44880007 to 44880012 5 + TSS region transcription start site region 37038
Tssr37039 4 44884939 to 44884943 4 + TSS region transcription start site region 37039
A630057N01Rik 4 44915314 to 44919795 4481 unclassified gene RIKEN cDNA A630057N01 gene
Tssr37040 4 44924168 to 44924171 3 + TSS region transcription start site region 37040
Tssr37041 4 44943727 to 44943791 64 + TSS region transcription start site region 37041
Gm12678 4 44943753 to 44948330 4577 + lincRNA gene predicted gene 12678
Tssr37042 4 44953269 to 44953309 40 + TSS region transcription start site region 37042
Gm30763 4 44956562 to 44959784 3222 - lncRNA gene predicted gene, 30763
Tssr37043 4 44967765 to 44967772 7 + TSS region transcription start site region 37043
Gm12493 4 44967769 to 44971096 3327 + antisense lncRNA gene predicted gene 12493
Gm12679 4 44970576 to 44978319 7743 - antisense lncRNA gene predicted gene 12679
Cpgi14224 4 44973676 to 44973884 208 CpG island CpG island 14224
Cpgi14225 4 44981244 to 44981768 524 CpG island CpG island 14225
Tssr37044 4 44981389 to 44981461 72 + TSS region transcription start site region 37044
Grhpr 4 44981395 to 44990734 9339 + protein coding gene glyoxylate reductase/hydroxypyruvate reductase
Tssr37045 4 44981478 to 44981485 7 + TSS region transcription start site region 37045
Zbtb5 4 44991242 to 45012412 21170 - protein coding gene zinc finger and BTB domain containing 5
Cpgi14226 4 45011596 to 45013212 1616 CpG island CpG island 14226
Tssr41524 4 45011654 to 45011698 44 - TSS region transcription start site region 41524
Tssr37046 4 45011728 to 45011748 20 + TSS region transcription start site region 37046
Tssr37047 4 45011758 to 45011771 13 + TSS region transcription start site region 37047
Tssr41525 4 45011946 to 45011974 28 - TSS region transcription start site region 41525
Tssr41526 4 45012059 to 45012078 19 - TSS region transcription start site region 41526
Tssr41527 4 45012093 to 45012159 66 - TSS region transcription start site region 41527
Tssr37048 4 45012168 to 45012204 36 + TSS region transcription start site region 37048
Tssr41528 4 45012287 to 45012325 38 - TSS region transcription start site region 41528
1700055D18Rik 4 45012408 to 45014356 1948 + antisense lncRNA gene RIKEN cDNA 1700055D18 gene
Tssr37049 4 45012795 to 45012844 49 + TSS region transcription start site region 37049
Tssr37050 4 45013531 to 45013536 5 + TSS region transcription start site region 37050
Cpgi14227 4 45018493 to 45019317 824 CpG island CpG island 14227
Polr1e 4 45018609 to 45034279 15670 + protein coding gene polymerase (RNA) I polypeptide E
Tssr37051 4 45018619 to 45018675 56 + TSS region transcription start site region 37051
Fbxo10 4 45034247 to 45084604 50357 - protein coding gene F-box protein 10
Gm30939 4 45044936 to 45061986 17050 + lncRNA gene predicted gene, 30939
Im2 4 45077682 to 45077816 134 QTL immunoregulatory 2
D4Mit5 4 45077682 to 45077816 134 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 5
Cpgi14228 4 45084059 to 45085000 941 CpG island CpG island 14228
Tssr41529 4 45084538 to 45084603 65 - TSS region transcription start site region 41529
Tomm5 4 45105209 to 45108113 2904 - protein coding gene translocase of outer mitochondrial membrane 5
Cpgi14229 4 45107562 to 45108170 608 CpG island CpG island 14229
Tssr41530 4 45108069 to 45108128 59 - TSS region transcription start site region 41530
Tssr37052 4 45121573 to 45121590 17 + TSS region transcription start site region 37052
D4Mit1006 4 45127937 to 45128086 149 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 1006
Tssr37053 4 45130447 to 45130450 3 + TSS region transcription start site region 37053
Gm12566 4 45136250 to 45136608 358 - pseudogene predicted gene 12566
Cpgi14230 4 45142646 to 45142826 180 CpG island CpG island 14230
Cpgi14231 4 45184269 to 45185616 1347 CpG island CpG island 14231
Tssr37054 4 45184722 to 45184760 38 + TSS region transcription start site region 37054
Tssr37055 4 45184815 to 45184851 36 + TSS region transcription start site region 37055
Frmpd1 4 45184875 to 45285936 101061 + protein coding gene FERM and PDZ domain containing 1
Tssr37056 4 45203884 to 45203889 5 + TSS region transcription start site region 37056
Tssr37057 4 45203915 to 45203920 5 + TSS region transcription start site region 37057
Tssr37058 4 45203921 to 45203931 10 + TSS region transcription start site region 37058
D4Mit238 4 45230131 to 45230241 110 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 238
Frmpd1os 4 45234723 to 45243990 9267 - antisense lncRNA gene FERM and PDZ domain containing 1, opposite strand
Trmt10b 4 45297127 to 45316131 19004 + protein coding gene tRNA methyltransferase 10B
Tssr37059 4 45297150 to 45297175 25 + TSS region transcription start site region 37059
Cpgi14232 4 45297246 to 45297499 253 CpG island CpG island 14232
Exosc3 4 45316629 to 45320603 3974 - protein coding gene exosome component 3
Cpgi14233 4 45320032 to 45320865 833 CpG island CpG island 14233
Tssr41531 4 45320270 to 45320283 13 - TSS region transcription start site region 41531
Tssr37060 4 45320373 to 45320383 10 + TSS region transcription start site region 37060
Tssr41532 4 45320376 to 45320438 62 - TSS region transcription start site region 41532
Tssr37061 4 45320385 to 45320397 12 + TSS region transcription start site region 37061
Tssr37062 4 45320418 to 45320429 11 + TSS region transcription start site region 37062
Tssr41533 4 45320462 to 45320473 11 - TSS region transcription start site region 41533
Tssr41534 4 45320580 to 45320634 54 - TSS region transcription start site region 41534